mRNA_H-elongata_contig108032.657.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108032.657.1
Unique NamemRNA_H-elongata_contig108032.657.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108032.657.1 vs. uniprot
Match: D7FRI0_ECTSI (M20_dimer domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRI0_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 6.200e-22
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    7 EWRAFVHTLQLPFPLSCLLVSRACLRYVLMILLRVGSPVAPVGHALTRLTLSPNALDGAVKWNVVPGTCTV 219
            EW+ FV  LQLP PL  LL     L  VLM+LL++GSP+APVGHALTRLT+SPNAL GAVK NVVPG CTV
Sbjct:  276 EWKGFVKALQLPGPLEWLLTFPPLLPLVLMVLLKMGSPIAPVGHALTRLTMSPNALVGAVKDNVVPGICTV 346
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BLAST of mRNA_H-elongata_contig108032.657.1 vs. uniprot
Match: A0A6H9X0Y8_9MICO (M20/M25/M40 family metallo-hydrolase n=5 Tax=unclassified Pseudoclavibacter TaxID=2615177 RepID=A0A6H9X0Y8_9MICO)

HSP 1 Score: 57.8 bits (138), Expect = 5.040e-8
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:    7 EWRAFVHTLQLPFPLSCLLVSRACLRYVLMILLRVGSPVAPVGHALTRLTLSPNALDGAVKWNVVPGTCTV 219
             W + VH LQL   L+  L+  A L   L  L     P+AP+GHALTR+T+SPN L    K NV+PGT T+
Sbjct:  250 HWASLVHALQLDADLTERLLDPARLDGALPAL----GPLAPLGHALTRVTVSPNILRAGDKHNVIPGTATI 316
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BLAST of mRNA_H-elongata_contig108032.657.1 vs. uniprot
Match: A0A7C8BVJ1_9MICO (M20/M25/M40 family metallo-hydrolase n=2 Tax=Pseudoclavibacter caeni TaxID=908846 RepID=A0A7C8BVJ1_9MICO)

HSP 1 Score: 52.0 bits (123), Expect = 5.550e-6
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:    1 LAEWRAFVHTLQLPFPLSCLLVSRACLRYVLMILLRVGSPVAPVGHALTRLTLSPNALDGAVKWNVVPGTCTV 219
            L  W + VH L+L    +  L+  A L   L  L     P+AP+GHALTR+T+SP+ +    K NV+PG+ T+
Sbjct:  307 LPHWESLVHGLRLGPQTTARLLDPATLDAALPAL----GPLAPLGHALTRMTVSPDIVRAGEKRNVIPGSATI 375
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BLAST of mRNA_H-elongata_contig108032.657.1 vs. uniprot
Match: A0A835YY18_9STRA (M20_dimer domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY18_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 5.570e-6
Identity = 25/61 (40.98%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   25 HTLQLPFPLSCLLVSRACLRYVLMILLRVGSPVAPVGHALTRLTLSPNALDGAVKWNVVPG 207
             +L +P+ L   L     +  V+ +L R+G+P+AP+ HALT +T+SPN + G  K NV+PG
Sbjct:  318 RSLDMPWALKWALSFWPLVPLVIALLRRLGTPLAPMAHALTTMTISPNLVTGPSKSNVIPG 378
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BLAST of mRNA_H-elongata_contig108032.657.1 vs. uniprot
Match: UPI00042167DF (M20/M25/M40 family metallo-hydrolase n=1 Tax=Pseudoclavibacter soli TaxID=452623 RepID=UPI00042167DF)

HSP 1 Score: 50.8 bits (120), Expect = 1.410e-5
Identity = 31/73 (42.47%), Postives = 40/73 (54.79%), Query Frame = 1 
Query:    1 LAEWRAFVHTLQLPFPLSCLLVSRACLRYVLMILLRVGSPVAPVGHALTRLTLSPNALDGAVKWNVVPGTCTV 219
            L  W + VH LQL   L   L+    L   L  L      +AP+GHALTR+T+SPN +    K NV+PG+ TV
Sbjct:  258 LPHWVSLVHGLQLEADLEARLLDVDTLDAALPEL----GELAPLGHALTRMTVSPNIVRAGDKHNVIPGSATV 326
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BLAST of mRNA_H-elongata_contig108032.657.1 vs. uniprot
Match: A0A1R4FTX8_9MICO (M20_dimer domain-containing protein n=1 Tax=Gulosibacter sp. 10 TaxID=1255570 RepID=A0A1R4FTX8_9MICO)

HSP 1 Score: 49.7 bits (117), Expect = 3.610e-5
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:    1 LAEWRAFVHTLQLPFPLSCLLVSRACLRYVLMILLRVGSPVAPVGHALTRLTLSPNALDGAVKWNVVPGTCTV 219
            L  WR+FVH L +   L+  L+  A +   L  L      +A +GHALTR+T+SPN +    K NV+PG  T+
Sbjct:  251 LPYWRSFVHALGVDADLTAALLDPARVDAALPRL----DDLAALGHALTRMTVSPNIVRAGDKLNVIPGEATI 319
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108032.657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FRI0_ECTSI6.200e-2269.01M20_dimer domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H9X0Y8_9MICO5.040e-846.48M20/M25/M40 family metallo-hydrolase n=5 Tax=uncla... [more]
A0A7C8BVJ1_9MICO5.550e-639.73M20/M25/M40 family metallo-hydrolase n=2 Tax=Pseud... [more]
A0A835YY18_9STRA5.570e-640.98M20_dimer domain-containing protein n=1 Tax=Tribon... [more]
UPI00042167DF1.410e-542.47M20/M25/M40 family metallo-hydrolase n=1 Tax=Pseud... [more]
A0A1R4FTX8_9MICO3.610e-539.73M20_dimer domain-containing protein n=1 Tax=Gulosi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108032contigH-elongata_contig108032:1520..1738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue6.4e-18
Seed eggNOG ortholog2880.D7FRI0
EggNOG free text desc.aminoacylase activity
EggNOG OGsCOG0624@1,KOG2275@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.994864-CDS-H-elongata_contig108032:1519..17381622929608.994864-CDS-H-elongata_contig108032:1519..1738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108032 1520..1738 +
1691679090.0852876-CDS-H-elongata_contig108032:1519..17381691679090.0852876-CDS-H-elongata_contig108032:1519..1738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108032 1520..1738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108032.657.1prot_H-elongata_contig108032.657.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108032 1520..1738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108032.657.1

>prot_H-elongata_contig108032.657.1 ID=prot_H-elongata_contig108032.657.1|Name=mRNA_H-elongata_contig108032.657.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
LAEWRAFVHTLQLPFPLSCLLVSRACLRYVLMILLRVGSPVAPVGHALTR
LTLSPNALDGAVKWNVVPGTCTV
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mRNA from alignment at H-elongata_contig108032:1520..1738+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108032.657.1 ID=mRNA_H-elongata_contig108032.657.1|Name=mRNA_H-elongata_contig108032.657.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig108032:1520..1738+ (Himanthalia elongata Himel1 dioecious)
TTGGCAGAATGGAGAGCGTTCGTACACACCCTGCAGCTTCCATTTCCCCT
GAGCTGTCTCCTCGTGTCTCGAGCCTGTCTGCGTTACGTGCTGATGATCT
TGCTCCGCGTCGGCAGCCCGGTCGCCCCCGTGGGCCACGCGCTGACAAGG
CTGACGCTATCGCCGAACGCACTTGATGGCGCTGTCAAGTGGAACGTTGT
CCCGGGGACCTGCACGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig108032:1520..1738+

>mRNA_H-elongata_contig108032.657.1 ID=mRNA_H-elongata_contig108032.657.1|Name=mRNA_H-elongata_contig108032.657.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig108032:1520..1738+ (Himanthalia elongata Himel1 dioecious)
TTGGCAGAATGGAGAGCGTTCGTACACACCCTGCAGCTTCCATTTCCCCT
GAGCTGTCTCCTCGTGTCTCGAGCCTGTCTGCGTTACGTGCTGATGATCT
TGCTCCGCGTCGGCAGCCCGGTCGCCCCCGTGGGCCACGCGCTGACAAGG
CTGACGCTATCGCCGAACGCACTTGATGGCGCTGTCAAGTGGAACGTTGT
CCCGGGGACCTGCACGGTGTTGGCAGAATGGAGAGCGTTCGTACACACCC
TGCAGCTTCCATTTCCCCTGAGCTGTCTCCTCGTGTCTCGAGCCTGTCTG
CGTTACGTGCTGATGATCTTGCTCCGCGTCGGCAGCCCGGTCGCCCCCGT
GGGCCACGCGCTGACAAGGCTGACGCTATCGCCGAACGCACTTGATGGCG
CTGTCAAGTGGAACGTTGTCCCGGGGACCTGCACGGTG
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