mRNA_H-elongata_contig107941.648.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107941.648.1
Unique NamemRNA_H-elongata_contig107941.648.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107941.648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107941contigH-elongata_contig107941:1580..1894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.1425667-CDS-H-elongata_contig107941:1579..18941622929608.1425667-CDS-H-elongata_contig107941:1579..1894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107941 1580..1894 +
1691679089.7308214-CDS-H-elongata_contig107941:1579..18941691679089.7308214-CDS-H-elongata_contig107941:1579..1894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107941 1580..1894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107941.648.1prot_H-elongata_contig107941.648.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107941 1580..1894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107941.648.1

>prot_H-elongata_contig107941.648.1 ID=prot_H-elongata_contig107941.648.1|Name=mRNA_H-elongata_contig107941.648.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MSKVDPLQHIRLFLLLKVRPTTTTTTINPGKPPTKPSPIVLLLAYQNIFN
LYPAALLLQYYSRVYNQKPKPPPLCDGRGIKRQAVSQHQNNSNSHTLLIL
LVGF*
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mRNA from alignment at H-elongata_contig107941:1580..1894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107941.648.1 ID=mRNA_H-elongata_contig107941.648.1|Name=mRNA_H-elongata_contig107941.648.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=315bp|location=Sequence derived from alignment at H-elongata_contig107941:1580..1894+ (Himanthalia elongata Himel1 dioecious)
ATGTCAAAAGTCGACCCCCTCCAACATATCCGGCTCTTCCTTCTGTTAAA
AGTGCGACCAACAACAACAACAACAACAATAAATCCAGGAAAACCCCCCA
CTAAACCTTCGCCAATAGTACTGCTGCTCGCATATCAAAACATTTTCAAT
TTATACCCAGCAGCCCTCTTACTCCAATATTACTCTCGAGTTTACAACCA
GAAACCAAAACCTCCCCCGCTCTGTGATGGCAGGGGAATCAAACGCCAGG
CTGTTAGTCAGCATCAAAACAATTCAAATAGTCACACTCTGCTGATACTG
CTGGTCGGATTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig107941:1580..1894+

>mRNA_H-elongata_contig107941.648.1 ID=mRNA_H-elongata_contig107941.648.1|Name=mRNA_H-elongata_contig107941.648.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig107941:1580..1894+ (Himanthalia elongata Himel1 dioecious)
ATGTCAAAAGTCGACCCCCTCCAACATATCCGGCTCTTCCTTCTGTTAAA
AGTGCGACCAACAACAACAACAACAACAATAAATCCAGGAAAACCCCCCA
CTAAACCTTCGCCAATAGTACTGCTGCTCGCATATCAAAACATTTTCAAT
TTATACCCAGCAGCCCTCTTACTCCAATATTACTCTCGAGTTTACAACCA
GAAACCAAAACCTCCCCCGCTCTGTGATGGCAGGGGAATCAAACGCCAGG
CTGTTAGTCAGCATCAAAACAATTCAAATAGTCACACTCTGCTGATACTG
CTGGTCGGATTTTAAATGTCAAAAGTCGACCCCCTCCAACATATCCGGCT
CTTCCTTCTGTTAAAAGTGCGACCAACAACAACAACAACAACAATAAATC
CAGGAAAACCCCCCACTAAACCTTCGCCAATAGTACTGCTGCTCGCATAT
CAAAACATTTTCAATTTATACCCAGCAGCCCTCTTACTCCAATATTACTC
TCGAGTTTACAACCAGAAACCAAAACCTCCCCCGCTCTGTGATGGCAGGG
GAATCAAACGCCAGGCTGTTAGTCAGCATCAAAACAATTCAAATAGTCAC
ACTCTGCTGATACTGCTGGTCGGATTTTAA
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