mRNA_H-elongata_contig107493.618.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107493.618.1
Unique NamemRNA_H-elongata_contig107493.618.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig107493.618.1 vs. uniprot
Match: D7FNP3_ECTSI (Poly(A) binding protein, cytoplasmic 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP3_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 4.160e-36
Identity = 74/97 (76.29%), Postives = 80/97 (82.47%), Query Frame = 1
Query:    1 QGVELGGRRVRVGWAQKNTSLHVSGLDN-SITTEMLVREFSRFGPLDKELTTTSSKYGGRCVCFGFVKFRYRQHAETAKKELNERAAFAGLCPRLHI 288
            QGVELGGRRVRVGWAQKNTSL+V GL+  +ITTEMLVREF+RFGPLDKELTT   K G +   FGFVK+RYR HAE AKKELNER AF GLCP L I
Sbjct:  267 QGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTI--KPGAK---FGFVKYRYRLHAEAAKKELNERPAFDGLCPSLEI 358          
BLAST of mRNA_H-elongata_contig107493.618.1 vs. uniprot
Match: A0A6H5L4J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J2_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 6.120e-36
Identity = 74/97 (76.29%), Postives = 80/97 (82.47%), Query Frame = 1
Query:    1 QGVELGGRRVRVGWAQKNTSLHVSGLDN-SITTEMLVREFSRFGPLDKELTTTSSKYGGRCVCFGFVKFRYRQHAETAKKELNERAAFAGLCPRLHI 288
            QGVELGGRRVRVGWAQKNTSL+V GL+  +ITTEMLVREF+RFGPLDKELTT   K G +   FGFVK+RYR HAE AKKELNER AF GLCP L I
Sbjct:  130 QGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTI--KPGAK---FGFVKYRYRLHAEAAKKELNERPAFDGLCPSLEI 221          
BLAST of mRNA_H-elongata_contig107493.618.1 vs. uniprot
Match: L8H825_ACACA (RNA recognition motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H825_ACACA)

HSP 1 Score: 78.6 bits (192), Expect = 6.460e-15
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   13 LGGRRVRVGWAQKNTSLHVSGLDNSITTEMLVREFSRFGPLDKELTTTSSKYGGRCVCFGFVKFRYRQHAETAKKELNERAAFA 264
            +GGR +R+GWAQKNT+L +  LD SIT+  L   F +FGP+ +E T   ++       +GFV+FR+R+HAE AK+E+N +   A
Sbjct:  128 VGGRAIRIGWAQKNTNLFIGDLDPSITSAQLREVFRQFGPIYEEETFVKNRN------YGFVRFRHRKHAEMAKREMNNKVLGA 205          
BLAST of mRNA_H-elongata_contig107493.618.1 vs. uniprot
Match: A0A7S3DFR0_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DFR0_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 7.040e-15
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    4 GVELGGRRVRVGWAQKNTSLHVSGLDNSITTEMLVREFSRFGPLDKELTTTSSKYGGRCVCFGFVKFRYRQHAETAKKELNERAAFAGLCPRLHIG 291
            G  +G R +R+GWAQKNT+L +  LD S+T+E+L  EF +FGPL +E   T  K G   + +GFV+FR R+ AETAK+E+  +  F G   R+  G
Sbjct:   89 GARIGERAIRLGWAQKNTNLFIGDLDASVTSEILFNEFKQFGPLFEE--DTFVKEG---MSYGFVRFRKREDAETAKREMQGKN-FHGRVIRIGWG 178          
BLAST of mRNA_H-elongata_contig107493.618.1 vs. uniprot
Match: W7TSQ6_9STRA (Tia1 cytotoxic granule-associated rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSQ6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.990e-13
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    1 QGVELGGRRVRVGWAQKNTSLHVSGLDNSITTEMLVREFSRFGPLDKELTTTSSKYGGRCVCFGFVKFRYRQHAETAKKELNERAAFAGLCP 276
            QG ++ GRR+R+GWAQ+NT+L +  LD S   E L R F  FG L    T  S    G+C  +G VKF  R+ AETA++E++ R    G  P
Sbjct:  167 QGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLL---YTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRP 255          
BLAST of mRNA_H-elongata_contig107493.618.1 vs. uniprot
Match: A0A7S0DL40_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DL40_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 2.690e-12
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    4 GVELGGRRVRVGWAQKNTSLHVSGLDNSITTEMLVREFSRFGPLDKELTTTSSKYGGRCVCFGFVKFRYRQHAETAKKELN 246
            GVE+ GR++R GWAQ+NT+L V  LDN+I   +    FSR+G L  + T      G     FG VKF+ R++AETAK ELN
Sbjct:  138 GVEVSGRKIRTGWAQRNTTLFVGDLDNTIDATVYRTAFSRYGNLVDDETYFKVDKG-----FGMVKFKTRENAETAKVELN 213          
BLAST of mRNA_H-elongata_contig107493.618.1 vs. uniprot
Match: A0A836CDW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDW8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.770e-12
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   10 ELGGRRVRVGWAQKNTSLHVSGLDNSITTEMLVREFSRFGPLDKELTTTSSKYGGRCVCFGFVKFRYRQHAETAKKELNERAAF 261
            E+ GRR+RVGWAQKN +L VSGL + +T E +   F  FG L++E T   +   G  V    VK+R R HAE A+++LN   A 
Sbjct:   80 EVHGRRIRVGWAQKNAALAVSGLPDGVTAEQVKALFRPFGALEEENTQLMTDGSGTAV----VKYRNRLHAEDARRQLNGSQAL 159          
BLAST of mRNA_H-elongata_contig107493.618.1 vs. uniprot
Match: A0A7S2RB19_9STRA (Hypothetical protein n=4 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RB19_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 8.790e-11
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 1
Query:    4 GVELGGRRVRVGWAQKNTSLHVSGLDNSITTEMLVREFSRFGPLD--------KELTTTSSKYGGRCVCFGFVKFRYRQHAETAKKELN 246
            G E+ GRRVRVGWA KN++L V  LD  ++ E L+  F+RFGPLD         E  +   + GG        KF  R HAE+AK+ L+
Sbjct:  116 GREVAGRRVRVGWAMKNSTLVVKDLDPGLSEEDLLNAFARFGPLDLDQSGVRPAEPCSEEEEAGGSTALQAVFKFTQRTHAESAKQNLS 204          
BLAST of mRNA_H-elongata_contig107493.618.1 vs. uniprot
Match: A0A7S0TF52_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Elphidium margaritaceum TaxID=933848 RepID=A0A7S0TF52_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 4.020e-10
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    4 GVELGGRRVRVGWAQKNTSLHV---SGLDNSITTEMLVREFSRFGPLDKELTTTS-SKYGGRCVCFGFVKFRYRQHAETAKKELN 246
            G+E+ GR +R+GWAQKNT+L V     ++  IT E L   FS FGP+ +E T    +KYG       FVKF++R HAE AK  L+
Sbjct:   67 GLEIAGRAIRIGWAQKNTNLFVCLVGDVERHITGEHLREIFSEFGPIYEEDTFVKRNKYG-------FVKFKHRLHAEKAKAALD 144          
BLAST of mRNA_H-elongata_contig107493.618.1 vs. uniprot
Match: A0A7S3Z8S4_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8S4_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 4.860e-9
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    4 GVELGGRRVRVGWAQKNTSLHVSGLDNSITTEMLVREFSRFGPLDKELTTTSSKYGGRCVCFGFVKFRYRQHAETAKKELN 246
            GV + GR++R GWAQ+NT+L V  LD+ +        F+R+G L  + T      G     FG VK++ R++AETAK ELN
Sbjct:  171 GVVVSGRKIRTGWAQRNTTLFVGDLDSFVDESEYRAAFARYGSLVLDETYFKVDKG-----FGMVKYKTRENAETAKMELN 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107493.618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FNP3_ECTSI4.160e-3676.29Poly(A) binding protein, cytoplasmic 4-like n=1 Ta... [more]
A0A6H5L4J2_9PHAE6.120e-3676.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
L8H825_ACACA6.460e-1545.24RNA recognition motif domain containing protein n=... [more]
A0A7S3DFR0_9EUKA7.040e-1545.83Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
W7TSQ6_9STRA5.990e-1343.48Tia1 cytotoxic granule-associated rna binding prot... [more]
A0A7S0DL40_9EUKA2.690e-1248.15Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A836CDW8_9STRA9.770e-1245.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RB19_9STRA8.790e-1142.70Hypothetical protein n=4 Tax=Rhizochromulina marin... [more]
A0A7S0TF52_9EUKA4.020e-1045.88Hypothetical protein (Fragment) n=1 Tax=Elphidium ... [more]
A0A7S3Z8S4_9EUKA4.860e-941.98Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107493contigH-elongata_contig107493:198..1075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue9.2e-31
Seed eggNOG ortholog2880.D7FNP3
KEGG rclassRC00331,RC00418,RC02600
KEGG koko:K17989
KEGG ReactionR00220,R00590,R00996
KEGG Pathwayko00260,ko00270,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map00290,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00570
EggNOG free text desc.RNA binding
EggNOG OGsKOG0145@1,KOG0145@2759
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-01_004780.1
EC4.3.1.17,4.3.1.19
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929604.8603072-CDS-H-elongata_contig107493:197..3851622929604.8603072-CDS-H-elongata_contig107493:197..385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107493 198..385 +
1691679088.346539-CDS-H-elongata_contig107493:197..3851691679088.346539-CDS-H-elongata_contig107493:197..385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107493 198..385 +
1622929604.8806548-CDS-H-elongata_contig107493:957..10751622929604.8806548-CDS-H-elongata_contig107493:957..1075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107493 958..1075 +
1691679088.3580713-CDS-H-elongata_contig107493:957..10751691679088.3580713-CDS-H-elongata_contig107493:957..1075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107493 958..1075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107493.618.1prot_H-elongata_contig107493.618.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107493 198..1075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107493.618.1

>prot_H-elongata_contig107493.618.1 ID=prot_H-elongata_contig107493.618.1|Name=mRNA_H-elongata_contig107493.618.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
QGVELGGRRVRVGWAQKNTSLHVSGLDNSITTEMLVREFSRFGPLDKELT
TTSSKYGGRCVCFGFVKFRYRQHAETAKKELNERAAFAGLCPRLHIGGCC
C*
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mRNA from alignment at H-elongata_contig107493:198..1075+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107493.618.1 ID=mRNA_H-elongata_contig107493.618.1|Name=mRNA_H-elongata_contig107493.618.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=878bp|location=Sequence derived from alignment at H-elongata_contig107493:198..1075+ (Himanthalia elongata Himel1 dioecious)
CAGGGAGTAGAACTGGGAGGGAGGCGTGTGCGAGTCGGCTGGGCGCAGAA GAATACCTCCCTGCACGTAAGCGGCCTAGACAACTCCATCACCACAGAGA TGCTGGTACGCGAGTTCTCGCGCTTCGGGCCCCTGGACAAGGAACTCACG ACCACCAGCTCCAAGTACGGAGGTAGGTGTGTGTGTTTGTCTCGAGACGT CAGACATGCAGCAGCAGCAGCAGCCCCCCATTGGCTCCTTCCCGAGAGGA CAGCTATTAATAGAGTAGTTACAAAAAGATCTGTCAAACCAGAAGCTTAG CTTGTTGAAGAAAATATGGAGAAAATCCCAAGTGCCTTTCCCATCCTCTC AAGCCAGATTCCAGATGTGACGTGACCACTTTCCGCATTCCCCCTTGAAG CGCGCTCTCTTTCTCTATTATCAATAGGAAAATCAAGACATTACCTTACA TTACTTTACATTACTTTACATTACCTTACATTACTTTACATTACCTTACA TTACTTTACCTTAAATTACCTTACATTACTTTACATTACCTTACATTACT TTACATTACCTTACATTACCTTACATCACCTTACATCACCTTCCTTACCT ACTGTTTACAAATATATATATATATATATATATATATTCCAAGATATATC TGTCCCCTAACTCTAACCCTAACTCTAACCCTTTTCATCGCCTGGGGTGT CGTGCGATTGTGCGACTGCCCATTCTGGTCCTTGTTATGGCCGACCGCAA CAGCCCACAGCGGATTCGTGAAGTTCCGCTATCGACAGCATGCCGAAACC GCCAAGAAGGAGCTAAATGAGCGCGCGGCCTTTGCAGGGCTTTGTCCCAG GCTCCACATTGGTGGGTGCTGTTGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig107493:198..1075+

>mRNA_H-elongata_contig107493.618.1 ID=mRNA_H-elongata_contig107493.618.1|Name=mRNA_H-elongata_contig107493.618.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig107493:198..1075+ (Himanthalia elongata Himel1 dioecious)
CAGGGAGTAGAACTGGGAGGGAGGCGTGTGCGAGTCGGCTGGGCGCAGAA
GAATACCTCCCTGCACGTAAGCGGCCTAGACAACTCCATCACCACAGAGA
TGCTGGTACGCGAGTTCTCGCGCTTCGGGCCCCTGGACAAGGAACTCACG
ACCACCAGCTCCAAGTACGGAGGTAGGTGTGTGTGTTTCAGGGAGTAGAA
CTGGGAGGGAGGCGTGTGCGAGTCGGCTGGGCGCAGAAGAATACCTCCCT
GCACGTAAGCGGCCTAGACAACTCCATCACCACAGAGATGCTGGTACGCG
AGTTCTCGCGCTTCGGGCCCCTGGACAAGGAACTCACGACCACCAGCTCC
AAGTACGGAGGTAGGTGTGTGTGTTTCGGATTCGTGAAGTTCCGCTATCG
ACAGCATGCCGAAACCGCCAAGAAGGAGCTAAATGAGCGCGCGGCCTTTG
CAGGGCTTTGTCCCAGGCTCCACATTGGTGGGTGCTGTTGCTGACGGATT
CGTGAAGTTCCGCTATCGACAGCATGCCGAAACCGCCAAGAAGGAGCTAA
ATGAGCGCGCGGCCTTTGCAGGGCTTTGTCCCAGGCTCCACATTGGTGGG
TGCTGTTGCTGA
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