mRNA_H-elongata_contig10723.597.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10723.597.1
Unique NamemRNA_H-elongata_contig10723.597.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10723.597.1 vs. uniprot
Match: D7G8R0_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R0_ECTSI)

HSP 1 Score: 667 bits (1720), Expect = 2.470e-238
Identity = 341/446 (76.46%), Postives = 379/446 (84.98%), Query Frame = 1
Query:    1 VAGIKAAGAKIWGPVTKVVTPRKLFCFILFQVVYARLLRLLYKLQVQTWRVVRKHDPQPYEESVLGFLEPRLRMLSRVLVIAHLLNTAVRVSIASGWNAKPQLAKVLSDLVYCWYAGYFVDEAKRFFLPVWIPTLKADKRKGFIYNRSLSVLTWSICTLTVLEVISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRNGVRCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDSPKVSEVLQRIKTALKDVPNVDLLSPFRVHLVDFAETGLKITVVCYFATKSFDEFLYLQQLALLEVMRVAQGAGVTMTSVLHVDMTDPSPIS----VGMIHD----NLAQLDSTKLAAREHD----GHSTAAFEQEPLRKINGGLEETSRPTNESGVASRPRGGSV 1302
            +AG+KAAGA+ WGP+T VVTP+KLF F+LFQ+VY RLLRLLY+LQVQ WR+VRKHDPQPYE+SVLGF+EPRLR LSR LV+A+ L + VRV IASGWNA PQLAKVLSD+VYCWYAGYFVDEAKRFFLPVWIP+LKADKRKGFIYNRSLSVLTWSIC LTV EVIS+YLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQR GVRCEGRVERVGWYQTR+RGRDTRPTYVPNGMF+DTMVTNMDRITHRKFESSFQLRY+D+PKV+E+LQ IKTALKDVPN+DLLSPFRVHLVDFAE+GLKI VVCYFATKSFDEFLYLQQ+ALLEV RV QGA  TMTSVL+VDM +P+PI      GMI+      +AQ    K+ A   D    G   A+ E++  R ING          +S    +PRGG+V
Sbjct:   14 IAGLKAAGARFWGPLTNVVTPQKLFLFLLFQIVYRRLLRLLYRLQVQVWRLVRKHDPQPYEQSVLGFVEPRLRTLSRTLVVAYALKSGVRVLIASGWNANPQLAKVLSDVVYCWYAGYFVDEAKRFFLPVWIPSLKADKRKGFIYNRSLSVLTWSICLLTVSEVISAYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVRCEGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEILQGIKTALKDVPNIDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLEVTRVVQGASATMTSVLYVDMNNPAPIGKVPLAGMINSAQNKGVAQSGLPKVVAAPKDLNPKGAEGASIEEDGPRPINGTGVSGGSSVQKSRRVKKPRGGTV 459          
BLAST of mRNA_H-elongata_contig10723.597.1 vs. uniprot
Match: A0A4D9D8J2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8J2_9STRA)

HSP 1 Score: 355 bits (911), Expect = 9.000e-115
Identity = 172/337 (51.04%), Postives = 236/337 (70.03%), Query Frame = 1
Query:   55 VTPRKLFCFILFQVVYARLLRLLYKLQVQTW-RVVRKHDPQPYEESVLGFLEPRLRMLSRVLVIAHLLNTAVRVSIASGWNAKPQLAKVLSDLVYCWYAGYFVDEAKRFFLPVWIPTLKADKRKGFIYNRSLSVLTWSICTLTVLEVISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRNGVRCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDSPKVSEVLQRIKTALKDVPNVDLLSPFRVHLVDFAETGLKITVVCYFATKSFDEFLYLQQLALLEVMRVAQGAG 1062
            + P  L  F+  +++Y +  R L+      W R     +P+ YE+SVLGF+EP+L  L+  + + +++N  + + I  GW  +   A++++ L+Y  Y  YFV+E K+ +L  W+P+L+ D+R+ +I +RS SV+ W +   + +E IS++L+IP++STLAFGGIGGLA GLA KDV+SNFFGG+MLL  EPF PGDMV+F   G   EG+VERVG+YQTR+RGRDTRPTYVPN +F DTMVTNMDRITHR+FE+SF LR+ D   + EV+  IK AL+ +P VD+LSPFRVH   F    L +T  CYFATKS DE+LYLQQLAL+E+ RV    G
Sbjct:   10 INPSDLLLFVTTRLLYRKACRALHAFHHFLWKRAGILDEPRVYEDSVLGFMEPKLGTLTSFIGVTYVINVVLSLLIDIGWRVRADSARLMASLLYIAYGAYFVNEVKKEYLTTWVPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECG 346          
BLAST of mRNA_H-elongata_contig10723.597.1 vs. uniprot
Match: W7UBI9_9STRA (Small-conductance mechanosensitive channel n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBI9_9STRA)

HSP 1 Score: 355 bits (912), Expect = 1.270e-112
Identity = 172/337 (51.04%), Postives = 236/337 (70.03%), Query Frame = 1
Query:   55 VTPRKLFCFILFQVVYARLLRLLYKLQVQTW-RVVRKHDPQPYEESVLGFLEPRLRMLSRVLVIAHLLNTAVRVSIASGWNAKPQLAKVLSDLVYCWYAGYFVDEAKRFFLPVWIPTLKADKRKGFIYNRSLSVLTWSICTLTVLEVISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRNGVRCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDSPKVSEVLQRIKTALKDVPNVDLLSPFRVHLVDFAETGLKITVVCYFATKSFDEFLYLQQLALLEVMRVAQGAG 1062
            + P  L  F+  +++Y +  R L+      W R     +P+ YE+SVLGF+EP+L  L+  + + +++N  + + I  GW  +   A++++ L+Y  Y  YFV+E K+ +L  W+P+L+ D+R+ +I +RS SV+ W +   + +E IS++L+IP++STLAFGGIGGLA GLA KDV+SNFFGG+MLL  EPF PGDMV+F   G   EG+VERVG+YQTR+RGRDTRPTYVPN +F DTMVTNMDRITHR+FE+SF LR+ D   + EV+  IK AL+ +P VD+LSPFRVH   F    L +T  CYFATKS DE+LYLQQLAL+E+ RV    G
Sbjct:  200 INPSDLLLFVTTRLLYRKACRALHAFHHFLWKRAGIMDEPRVYEDSVLGFMEPKLGTLTSFIGVTYVINVVLSLLIDIGWRVRADSARLMASLLYIAYGAYFVNEVKKEYLTTWVPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECG 536          
BLAST of mRNA_H-elongata_contig10723.597.1 vs. uniprot
Match: A0A6U0TNP3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TNP3_9STRA)

HSP 1 Score: 340 bits (872), Expect = 2.820e-108
Identity = 193/433 (44.57%), Postives = 264/433 (60.97%), Query Frame = 1
Query:    4 AGIKAAGAKIWG----PVTKVVTPRKLFCFILFQVVYARLLRLLYKLQVQTWRVVRKHDPQP-YEESVLGFLEPRLRMLSRVLVIAHLLNTAVRVSIASGWNAKPQLAKVLSDLVYCWYAGYFVDEAKRFFLPVWIPTLKADKRKGFIYNRSLSVLTWSICTLTVLEVISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRNGVRCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDSPKVSEVLQRIKTALKDVPNVDLLSPFRVHLVDFAETGLKITVVCYFATKSFDEFLYLQQLALLEVMRVAQGAGVTMT---SVLHVDMTDPSPISV-GMIHDNLAQLDSTKLAAREHDGHSTAAFEQEPLRKINGGLEETSRPTNESGV 1275
            AG  AA   +W     P+  ++ PR L  +++F+  Y+R LRL Y LQ    R+++K  P P Y ++VLGFLEPR   LSR+  + +L+N ++        N +P L ++ + L Y  YAGYF++E +RF  P W P L  DKR+ +I +RS SV  W+I  + +L+ IS++  +P++S+LA GG+GG+AIGLA KDV+SNF GGLMLL+ EPF PGD +TF   G    G+VERVGWYQTR+R RDTRP YVPN  F +TMVTNMDRITHRKFES F ++     +V  +L  IK AL+  P +DLLSPFR +L+     GL+ +V+CYFATKS DEFL LQQ   LEV R  +  G+T       + V   +   + V GM+ D LA+  S     +  +    A   +EP R         + PT E+ V
Sbjct:   62 AGYNAA-LNVWAEVPTPLRVLMRPRDLLAYLIFRTCYSRALRLGYLLQTLLSRLLKKDIPPPAYLQTVLGFLEPRFAQLSRLTGLIYLVNVSISAIGLIDLNIRPGLDRLFTKLAYTAYAGYFLNEVRRFVTPRWFPKLAEDKRRAYIVDRSASVFFWTITIVLLLDQISTFFNVPLSSSLALGGVGGVAIGLASKDVVSNFVGGLMLLITEPFTPGDFITFLYQGQWMIGKVERVGWYQTRIRNRDTRPVYVPNAFFVNTMVTNMDRITHRKFESEFHIQLDSFAQVEGLLDDIKIALQGFPKLDLLSPFRANLIAVESDGLRFSVLCYFATKSLDEFLMLQQKVFLEVGRCVESRGLTWAFPRRTIDVRAREIGSLMVEGMMEDALARQQS---GTQRREIRRIAPVAREPDRTA-------AEPTTEASV 483          
BLAST of mRNA_H-elongata_contig10723.597.1 vs. uniprot
Match: A0A7S0SR49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SR49_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.890e-78
Identity = 127/266 (47.74%), Postives = 174/266 (65.41%), Query Frame = 1
Query:  292 NAKPQLAKVLSDLVYCWYAGYFVDEAKRFFLPVWIPTLKADKRKGFIYNRSLSVLTWSICTLTVLEVISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRNGVRCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDSPKVSEVLQRIKTALKDVPNVDLLS-PFRVHLVDFAETGLKITVVCYFATKSFDEFLYLQQLALLEVMRVAQGAGVTMTSVLH 1086
            + KP    +++ + Y  Y   F D  K  FL +++P L A++R+ ++  RS SV+ W +  L   E++S+YL++P++STLAFGG GGLA+GL+ +DV +NF GG++LL  EPF PGDMVTF+       GRVERVGW QTR+RGRDTRPTYVPN  F  T VTNM+RITHRKFE+   LRY D   +S+V+ +IK  L+ +P +D ++ PFR   V      L I V CYF+TKS DEFL LQQ A LE+++       ++    H
Sbjct:   20 SVKPDFHIIVARVSYAIYLTNFFDMFKLKFLNLFLPNLNANRRQSYVVQRSSSVILWVVGVLIACEMVSTYLKVPLSSTLAFGGFGGLALGLSARDVAANFLGGILLLFNEPFTPGDMVTFRSGNTELLGRVERVGWGQTRIRGRDTRPTYVPNSHFVQTAVTNMERITHRKFEAIVPLRYQDHAVMSDVVTKIKEGLRKIPKLDTMTQPFRCSFVKVGSYSLDIEVTCYFSTKSIDEFLPLQQAANLEIIKAVYSCNASLALPTH 285          
BLAST of mRNA_H-elongata_contig10723.597.1 vs. uniprot
Match: A0A6H5L1M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1M0_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 1.380e-73
Identity = 122/165 (73.94%), Postives = 130/165 (78.79%), Query Frame = 1
Query:  388 VWIPTLKADKRKGFIYNRSLSVLTWSICTLTVLEVISSYLRIPITSTLAFGGIGGLAIGLAGK-------------------------------DVLSNFFGGLMLLLAEPFIPGDMVTFQRNGVRCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMD 789
            +WIP+LKADKRKGFIYNRSLSVLTWSIC LTV EVIS+YLRIPITSTLAFGGIGGLAIGLAGK                               DVLSNFFGGLMLLLAEPFIPGDMVTFQR GVRCEGRVERVGWYQTR+RGRDTRPTYVPNGMF+DTMV++ +
Sbjct:    1 MWIPSLKADKRKGFIYNRSLSVLTWSICLLTVSEVISAYLRIPITSTLAFGGIGGLAIGLAGKEALFVACVGIHGPRSPPLRSSLAVVCSVAKKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVRCEGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVSSRE 165          
BLAST of mRNA_H-elongata_contig10723.597.1 vs. uniprot
Match: A0A835ZID6_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZID6_9STRA)

HSP 1 Score: 253 bits (645), Expect = 1.510e-72
Identity = 134/275 (48.73%), Postives = 177/275 (64.36%), Query Frame = 1
Query:   43 VTKVVTPRKLFCFILFQVVYARLLRLLYKLQVQTWRVVRKHDP-------QPYEESVLGFLEPRLRMLSRVLVIAHLLNTAVRVSIASGWNAKPQLAKVLSDLVYCWYAGYFVDEAKR----------------FFLPVWIPTLKADKRKGFIYNRSLSVLTWSICTLTVLEVISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRNGVRCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRIT 798
            V  ++ PR L  F+ F +VY + LR++Y LQ +  R +            +P+E+S LGFLEPRLR L+RV+   ++ N A+      G+  +P     +S +V   YAGYF+DE KR                F+LPV  P L+ D RK FIYNR+ SVLTW++  L +L+VIS++L IP+ ST+AFGG GG+A G A K +  NFFGGL LLL+EPF+PGDMV F+  G   EGRVERVGWYQTR+RGRDTRPTY+PN +F   +VTNMDRI+
Sbjct:  205 VRALINPRDLALFVGFYLVYKKALRVIYGLQAKAMRAMASRSGSGAPAAVKPFEQSWLGFLEPRLRSLTRVMAGLYVANGALGGLANLGYRLRPGTQDFVSTVVATLYAGYFIDELKRQQRSRDAFCCLSCAPQFYLPVIWPELQNDMRKAFIYNRTTSVLTWTLVALGLLQVISAFLHIPLASTMAFGGAGGIAFGFAAKGIFENFFGGLTLLLSEPFVPGDMVHFEYGGEVMEGRVERVGWYQTRLRGRDTRPTYIPNNVFLSNLVTNMDRIS 479          
BLAST of mRNA_H-elongata_contig10723.597.1 vs. uniprot
Match: UPI0011848E02 (mechanosensitive ion channel family protein n=1 Tax=Pleionea sediminis TaxID=2569479 RepID=UPI0011848E02)

HSP 1 Score: 149 bits (376), Expect = 3.320e-37
Identity = 88/276 (31.88%), Postives = 150/276 (54.35%), Query Frame = 1
Query:  286 GWNAKPQLAKVLSDLVYCWYAGYFVDEAKRFFLPVWIPTLKADKRKGFIYNRSLSVLTWSICTLTVLEVISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRNGVRCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDSPKVSEVLQRIKTALKDVPNVDLLSPFRVHLVDFAETGLKITVVCYFATKSFDEFLYLQQLALLEVMRVAQGAGVTM---TSVLHVDMTDP 1104
            G N    + +V+   ++ W+   F+ ++++  +   +   + D+R       ++S L     T+TV+ VI   + + I++ LAFGGIGG+AIG A KD+L+NFFGGLM+ L  PF  GD V      +  EG +E +GW QTR+R  D RP YVPN +F +  V N  R+T+R+   +  +RY D   +  ++ ++   L+   +++      V+   F+ + +   + C+  TK + EF  ++Q  LL++  +   AG  +   TS LHV+M+ P
Sbjct:  104 GQNQAVMINEVILIGLFGWFLTRFIRKSEQHLIAHQVDK-EEDERIDHTTIEAISKLLRVSVTITVVLVILQTIGVSISAVLAFGGIGGIAIGFAAKDLLANFFGGLMIYLDRPFSHGDWVRSPDRNI--EGTIEHIGWRQTRIRTFDKRPLYVPNAVFNNIAVENPSRMTNRRIYETVGIRYDDIGAMKSIVDQVTDMLRSHEDIEQSKTLIVNFNAFSASSIDFFIYCFTKTKDWVEFHAVKQDVLLKIADIIDQAGAEIAFPTSTLHVNMSQP 376          
BLAST of mRNA_H-elongata_contig10723.597.1 vs. uniprot
Match: A0A6L5QRF6_9GAMM (Mechanosensitive ion channel n=1 Tax=Kangiella sp. HZ709 TaxID=2666328 RepID=A0A6L5QRF6_9GAMM)

HSP 1 Score: 149 bits (375), Expect = 3.390e-37
Identity = 84/233 (36.05%), Postives = 130/233 (55.79%), Query Frame = 1
Query:  403 LKADKRKGFIYNRSLSVLTWSICTLTVLEVISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRNGVRCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDSPKVSEVLQRIKTALKDVPNVDLLSPFRVHLVDFAETGLKITVVCYFATKSFDEFLYLQQLALLEVMRVAQGAGVTM---TSVLHVD 1092
            +K D+      ++ L ++   I TL + ++    L IPI   L FGGIGG+A+G A KD+L+NFFGGLM+ L +PF  GD +      +  EG VE +GW QTR+R  D RP YVPN  F +  V N  R+T+R+   S  LRY D  KV  ++ ++KT L+    +D  +   V+   FA + L   +  +  T+ + E+  ++Q  LL++M + +  G  +   TS LH++
Sbjct:  135 VKLDETGVLAVSKLLRLIVIVISTLIIFQL----LNIPIAGVLTFGGIGGVAVGFAAKDLLANFFGGLMIFLDKPFKVGDWIRSPDKEI--EGTVENIGWRQTRIRTFDKRPLYVPNATFTNISVENPSRMTNRRINESIGLRYDDWQKVETIVGKVKTMLQQHEEIDQTATLMVNFDKFAASSLDFFIYTFTKTRDWAEYHEIKQDVLLKIMNIIEQEGAEIAFPTSTLHMN 361          
BLAST of mRNA_H-elongata_contig10723.597.1 vs. uniprot
Match: A0A3E0DQ00_9GAMM (MscS family membrane protein n=1 Tax=Marinomonas pollencensis TaxID=491954 RepID=A0A3E0DQ00_9GAMM)

HSP 1 Score: 147 bits (371), Expect = 1.320e-36
Identity = 94/297 (31.65%), Postives = 147/297 (49.49%), Query Frame = 1
Query:  265 VRVSIA---SGWNAKPQLAKVLSDL-------VYCWYAGYFVDEAKRFFLPVWIPTLKADKRKGFIYNRSLSVLTWSICTLTVLEVISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRNGVRCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDSPKVSEVLQRIKTALKDVPNVDLLSPFRVHLVDFAETGLKITVVCYFATKSFDEFLYLQQLALLEVMRVAQGAGVTMTSVLH-VDMTDPSPISVG 1122
            V +S+A   SG    P    ++S L       +  W+   F+ EA+         + K  K+       ++S L      +T L VI   L   I+  LAFGG+GG+AIG A KD+LSNFFGGL++ L  PF+ GD +      +  EG VE +GW QTR+R  D RP YVPN  F+   V N  R++HR+   +  +RY D  K+ ++L  +KT + +   +D+     V+   F  + L   +  +  T  +  F  ++Q  L ++M + +  G  +    H V M +  P+S+G
Sbjct:   74 VGISVAAEISGTELDPTFTSIISALRDVGVIALLAWFVLRFIKEAEN----TLTTSSKVAKKVDVTTASAISKLLRVSVIITALLVILQTLGYSISGVLAFGGVGGIAIGFAAKDLLSNFFGGLIVYLDRPFVVGDWIRSPDKNI--EGTVENIGWRQTRIRTFDKRPLYVPNSTFSIISVENPSRMSHRRINETIGVRYDDFSKLPDILAEVKTMIAEHEALDMSQTCMVNFNQFGPSSLDFFIYTFTKTVDWKTFHEVKQDVLFKIMTIIESHGAEVAFPTHTVHMANTEPMSLG 364          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10723.597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8R0_ECTSI2.470e-23876.46Small Conductance Mechanosensitive Ion channel n=1... [more]
A0A4D9D8J2_9STRA9.000e-11551.04Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7UBI9_9STRA1.270e-11251.04Small-conductance mechanosensitive channel n=1 Tax... [more]
A0A6U0TNP3_9STRA2.820e-10844.57Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S0SR49_9STRA1.890e-7847.74Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A6H5L1M0_9PHAE1.380e-7373.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZID6_9STRA1.510e-7248.73Mechanosensitive ion channel-domain-containing pro... [more]
UPI0011848E023.320e-3731.88mechanosensitive ion channel family protein n=1 Ta... [more]
A0A6L5QRF6_9GAMM3.390e-3736.05Mechanosensitive ion channel n=1 Tax=Kangiella sp.... [more]
A0A3E0DQ00_9GAMM1.320e-3631.65MscS family membrane protein n=1 Tax=Marinomonas p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10723contigH-elongata_contig10723:4712..7916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score141.7
Seed ortholog evalue7.9e-31
Seed eggNOG ortholog1123502.AQXD01000003_gene1640
Preferred nameynaI
KEGG koko:K16052
KEGG TC1.A.23.4
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0042802,GO:0044464,GO:0071944
EggNOG free text desc.Mechanosensitive ion channel
EggNOG OGs1MXD2@1224,1RNUB@1236,1X5AX@135614,COG0668@1,COG0668@2
COG Functional cat.M
Best tax levelXanthomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSmall Conductance Mechanosensitive Ion channel
Ec32 orthologEc-22_002670.1
Exons8
Model size1305
Cds size1305
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10723.597.1prot_H-elongata_contig10723.597.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10723 4712..7916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929602.815974-CDS-H-elongata_contig10723:4711..51861622929602.815974-CDS-H-elongata_contig10723:4711..5186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 4712..5186 -
1691679087.4872074-CDS-H-elongata_contig10723:4711..51861691679087.4872074-CDS-H-elongata_contig10723:4711..5186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 4712..5186 -
1622929602.8286843-CDS-H-elongata_contig10723:5415..55741622929602.8286843-CDS-H-elongata_contig10723:5415..5574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 5416..5574 -
1691679087.5077093-CDS-H-elongata_contig10723:5415..55741691679087.5077093-CDS-H-elongata_contig10723:5415..5574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 5416..5574 -
1622929602.84044-CDS-H-elongata_contig10723:5748..58431622929602.84044-CDS-H-elongata_contig10723:5748..5843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 5749..5843 -
1691679087.5163398-CDS-H-elongata_contig10723:5748..58431691679087.5163398-CDS-H-elongata_contig10723:5748..5843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 5749..5843 -
1622929602.855432-CDS-H-elongata_contig10723:6215..63991622929602.855432-CDS-H-elongata_contig10723:6215..6399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 6216..6399 -
1691679087.5241134-CDS-H-elongata_contig10723:6215..63991691679087.5241134-CDS-H-elongata_contig10723:6215..6399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 6216..6399 -
1622929602.8757374-CDS-H-elongata_contig10723:6635..67121622929602.8757374-CDS-H-elongata_contig10723:6635..6712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 6636..6712 -
1691679087.5348368-CDS-H-elongata_contig10723:6635..67121691679087.5348368-CDS-H-elongata_contig10723:6635..6712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 6636..6712 -
1622929602.8870254-CDS-H-elongata_contig10723:6968..70521622929602.8870254-CDS-H-elongata_contig10723:6968..7052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 6969..7052 -
1691679087.5457993-CDS-H-elongata_contig10723:6968..70521691679087.5457993-CDS-H-elongata_contig10723:6968..7052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 6969..7052 -
1622929602.9014194-CDS-H-elongata_contig10723:7216..73541622929602.9014194-CDS-H-elongata_contig10723:7216..7354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 7217..7354 -
1691679087.5552986-CDS-H-elongata_contig10723:7216..73541691679087.5552986-CDS-H-elongata_contig10723:7216..7354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 7217..7354 -
1622929602.9209452-CDS-H-elongata_contig10723:7823..79161622929602.9209452-CDS-H-elongata_contig10723:7823..7916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 7824..7916 -
1691679087.565501-CDS-H-elongata_contig10723:7823..79161691679087.565501-CDS-H-elongata_contig10723:7823..7916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10723 7824..7916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10723.597.1

>prot_H-elongata_contig10723.597.1 ID=prot_H-elongata_contig10723.597.1|Name=mRNA_H-elongata_contig10723.597.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=435bp
VAGIKAAGAKIWGPVTKVVTPRKLFCFILFQVVYARLLRLLYKLQVQTWR
VVRKHDPQPYEESVLGFLEPRLRMLSRVLVIAHLLNTAVRVSIASGWNAK
PQLAKVLSDLVYCWYAGYFVDEAKRFFLPVWIPTLKADKRKGFIYNRSLS
VLTWSICTLTVLEVISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFG
GLMLLLAEPFIPGDMVTFQRNGVRCEGRVERVGWYQTRMRGRDTRPTYVP
NGMFADTMVTNMDRITHRKFESSFQLRYSDSPKVSEVLQRIKTALKDVPN
VDLLSPFRVHLVDFAETGLKITVVCYFATKSFDEFLYLQQLALLEVMRVA
QGAGVTMTSVLHVDMTDPSPISVGMIHDNLAQLDSTKLAAREHDGHSTAA
FEQEPLRKINGGLEETSRPTNESGVASRPRGGSV*
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mRNA from alignment at H-elongata_contig10723:4712..7916-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10723.597.1 ID=mRNA_H-elongata_contig10723.597.1|Name=mRNA_H-elongata_contig10723.597.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3205bp|location=Sequence derived from alignment at H-elongata_contig10723:4712..7916- (Himanthalia elongata Himel1 dioecious)
GTCGCTGGAATCAAGGCGGCCGGGGCGAAGATATGGGGACCGGTGACGAA GGTTGTTACTCCTCGGAAACTCTTCTGCTTCATACTGTTTCAGGTACAGT ACATCACATTAAAGTAAAGACGATATCATCACGCTTTGCAGCACCGCGCA GTTAATAGGGCCTCTCTTAACTTAACCCTTTTGGAACTGAATTTCAAGTT TTATATTGAATTTAGTACAGAAAAAAAACAGATCGAGTTCCATAGGGATT AATAGTAGTATAATTGTATATATTATAATAGTATTTACCTCCATGGCCCC GGAACATGCGAAGGCGACATTTCGAGCGATCGAGCAGCGTCAGAAGCTCA ATCCTCTACGAAGTGCCCCCCCTACAATATACAATATCGTTGGCATGCTT TATTTCAACGAGCGCGGTATATATGGTCACTCACTCAAAGGTTTCCGCTG TTTCTCAACAAAAAAACGCTCCGTGGCCATCGAGAGGCACCTTGGAATTT CCCCTGAACGGCTCAACGGGGGCTCCCTTTTTCCGCACTTGATATCCTCT CTTAAACCGCAGGTTGTATATGCGCGCTTGTTGCGCCTCCTGTACAAGCT GCAAGTGCAAACATGGCGAGTAGTTCGGAAGCACGACCCTCAGCCTTACG AGGAGTCTGTGCTAGGATTCTTGGAGCCGAGGTTGAGGATGCTCAGCAGG GTGAGTAAGGCCGAGTTATTTTATCTATTCTGCCTCGAAGCGGTGCTCGC TAAACGTTATTTCCTTGCACAACGCCTCCATGCAAACCCCGCAATTGTAC AGTATATATATATATATATACGAAGTATTCCTTTTTTGACGTCGCCGGCC TGTGCAACCGCCAGGTGCTCGTAATCGCGCACCTGTTAAACACCGCCGTC AGGGTTTCCATTGCCAGCGGGTGGAACGCGAAGCCACAGCTTGCCAAGGT AGAGAGACTAATAGAACTGGAAGGCGTTGAAGGCTTGTGTTGACTTCCGG GCGTTTGGGGGTGGAGGGGGGGGTTGCTGCAGATTATTAGGCTTTATTGG TAGCTCGACTAAAATGTCGCCGACTGGGTATTACTTTTAGTGTGCTCGAA CAGATATATTATTATTGATAGTATGCTAATATGGCGTGCGCGAGGGCTTC TTTAGGCCCTGTTTTCCAGCCATTGTGCCATAATCCCGCTGGCGGTGTTT GCAGGTGCTCTCCGACTTGGTGTACTGCTGGTACGCGGGATATTTCGTCG ACGAGGCCAAGCGGTTCTTCCTTCCCGTATGGTAAAATATGTGACCCTTT GTGTACGCAATGCCTCTCATCGTTACGTGTTGACCCCGCAGATAGTCTAG AGCTCTAGCGTTTTGCTAGAGTCCATGTGGAGTGAGTTATCGGCAAAAGA GTGAATAATAAAACTCTGCTCGGGGCAACAGCTAAACGGTGTTTGGCTCT AAACCCCTGGTTGTTTCCTCCCCCCCCCCACCGCCGCGCGTTTTGTATAC CATGTACTGTGTACTAGGATACCGACGCTGAAGGCAGACAAGCGAAAGGG TTTCATCTACAATCGATCACTGTCGGTCCTGACCTGGTCCATCTGCACAC TGACGGTGTTAGAGGTCATCAGTTCCTACCTCCGAATACCCATAACCTCC ACGCTAGCGTTCGGGGGGATCGGAGGTCTCGCCATTGGTTTGGCCGGTAA GGTACGCCGTTTCTATATATATATATATAATCATGGATACTTGTGCTGAG TATATATCTTAACGTCAAAATAAATGGCCAACCCTCATCAACAGAGCCTT AAATCTCCCGGGGAGCTGCCGGTAGATTCTTCTTTTTCTGCTTTTTTTAG CGAAGAAATCGTCTGGTTGGCATAGTGCACCCTCGGGGGGCGGGGGGGCG CGGCGAGAACCATCTGCACTTCGCAAGACGGATATATATATATATATATA TAGTCAGCCCGTTCTTCGTGCGATCCACATTGCATTGCATTGCGTTAAGC CCCGGCTGTGTGACGTGTACTCAAGCGATAACGACAACCGTCCATTCCGT TCCCTCTTGACTTCCCCTCCCAGGACGTGCTTTCCAATTTCTTTGGGGGG TTAATGCTTCTCCTCGCGGAGCCCTTCATTCCTGGAGACATGGTGACCTT CCAGAGAAACGGAGTGCGGTGAGACAAGACACCAATACTGGTAGCATTTT CATGTTCCACACGGCCGATGGATAAGGTGTCTCGACTGTACCGAAAACAT TACCCTTCCAGGTAGAGCTCCTCTCGGATGACTCGATCATAGAGAGAATA TCGTCTGTATTTTTCTTCCCGTCCTCCTTTTCTCCCCCTCAGGTGTGAAG GGCGCGTGGAGCGTGTGGGCTGGTATCAGACCAGGATGCGGGGTAGAGAC ACGCGGCCAACGTACGTCCCGAATGGCATGTTTGCAGACACCATGGTGAC CAACATGGACCGAATCACGCACCGCAAATTCGAATCAAGCTTCCAGCTCC GGTAAGCTCATTGAAAACTATTGAACGATACTGGTAACTCAATACCCGGA GACAGCTCAATCTGACTTTATATTTTCCCCATTTTCCAAGGTAATGTTAT CTTCCCCGTATGTGCAAAGCCTCCATATACCCCCTTGAGTTGGCTAAAAA GTGGTGCACATTGTCCCGTAGACCACTCGACGCCTCGCAAGGCTTTTTTT TGTTGACAGCGCGCGCTACGGTCCGCGCAGGTATTCTGACTCCCCGAAAG TGTCCGAGGTCCTGCAAAGAATCAAGACTGCCCTGAAGGACGTCCCTAAC GTGGATCTGCTGAGCCCGTTCCGCGTTCATCTGGTAGATTTTGCCGAGAC GGGGCTCAAGATAACCGTCGTTTGCTACTTTGCGACGAAGTCTTTCGACG AGTTTCTGTACCTACAGCAGCTCGCTCTCCTCGAGGTCATGCGTGTCGCC CAAGGCGCTGGTGTAACGATGACGAGCGTGTTGCACGTAGATATGACCGA CCCCTCCCCCATATCGGTGGGCATGATTCATGATAATTTGGCGCAGTTGG ATTCTACGAAGTTAGCTGCAAGAGAGCATGATGGGCATAGCACGGCGGCG TTCGAGCAGGAACCCCTTCGAAAGATAAACGGCGGTCTGGAGGAGACAAG CCGACCTACAAACGAAAGCGGGGTTGCTTCCCGACCACGCGGGGGTTCGG TGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig10723:4712..7916-

>mRNA_H-elongata_contig10723.597.1 ID=mRNA_H-elongata_contig10723.597.1|Name=mRNA_H-elongata_contig10723.597.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2610bp|location=Sequence derived from alignment at H-elongata_contig10723:4712..7916- (Himanthalia elongata Himel1 dioecious)
GTCGCTGGAATCAAGGCGGCCGGGGCGAAGATATGGGGACCGGTGACGAA
GGTTGTTACTCCTCGGAAACTCTTCTGCTTCATACTGTTTCAGGTCGCTG
GAATCAAGGCGGCCGGGGCGAAGATATGGGGACCGGTGACGAAGGTTGTT
ACTCCTCGGAAACTCTTCTGCTTCATACTGTTTCAGGTTGTATATGCGCG
CTTGTTGCGCCTCCTGTACAAGCTGCAAGTGCAAACATGGCGAGTAGTTC
GGAAGCACGACCCTCAGCCTTACGAGGAGTCTGTGCTAGGATTCTTGGAG
CCGAGGTTGAGGATGCTCAGCAGGGTTGTATATGCGCGCTTGTTGCGCCT
CCTGTACAAGCTGCAAGTGCAAACATGGCGAGTAGTTCGGAAGCACGACC
CTCAGCCTTACGAGGAGTCTGTGCTAGGATTCTTGGAGCCGAGGTTGAGG
ATGCTCAGCAGGGTGCTCGTAATCGCGCACCTGTTAAACACCGCCGTCAG
GGTTTCCATTGCCAGCGGGTGGAACGCGAAGCCACAGCTTGCCAAGGTGC
TCGTAATCGCGCACCTGTTAAACACCGCCGTCAGGGTTTCCATTGCCAGC
GGGTGGAACGCGAAGCCACAGCTTGCCAAGGTGCTCTCCGACTTGGTGTA
CTGCTGGTACGCGGGATATTTCGTCGACGAGGCCAAGCGGTTCTTCCTTC
CCGTATGGTGCTCTCCGACTTGGTGTACTGCTGGTACGCGGGATATTTCG
TCGACGAGGCCAAGCGGTTCTTCCTTCCCGTATGGATACCGACGCTGAAG
GCAGACAAGCGAAAGGGTTTCATCTACAATCGATCACTGTCGGTCCTGAC
CTGGTCCATCTGCACACTGACGGTGTTAGAGGTCATCAGTTCCTACCTCC
GAATACCCATAACCTCCACGCTAGCGTTCGGGGGGATCGGAGGTCTCGCC
ATTGGTTTGGCCGGTAAGGATACCGACGCTGAAGGCAGACAAGCGAAAGG
GTTTCATCTACAATCGATCACTGTCGGTCCTGACCTGGTCCATCTGCACA
CTGACGGTGTTAGAGGTCATCAGTTCCTACCTCCGAATACCCATAACCTC
CACGCTAGCGTTCGGGGGGATCGGAGGTCTCGCCATTGGTTTGGCCGGTA
AGGACGTGCTTTCCAATTTCTTTGGGGGGTTAATGCTTCTCCTCGCGGAG
CCCTTCATTCCTGGAGACATGGTGACCTTCCAGAGAAACGGAGTGCGGAC
GTGCTTTCCAATTTCTTTGGGGGGTTAATGCTTCTCCTCGCGGAGCCCTT
CATTCCTGGAGACATGGTGACCTTCCAGAGAAACGGAGTGCGGTGTGAAG
GGCGCGTGGAGCGTGTGGGCTGGTATCAGACCAGGATGCGGGGTAGAGAC
ACGCGGCCAACGTACGTCCCGAATGGCATGTTTGCAGACACCATGGTGAC
CAACATGGACCGAATCACGCACCGCAAATTCGAATCAAGCTTCCAGCTCC
GGTGTGAAGGGCGCGTGGAGCGTGTGGGCTGGTATCAGACCAGGATGCGG
GGTAGAGACACGCGGCCAACGTACGTCCCGAATGGCATGTTTGCAGACAC
CATGGTGACCAACATGGACCGAATCACGCACCGCAAATTCGAATCAAGCT
TCCAGCTCCGGTATTCTGACTCCCCGAAAGTGTCCGAGGTCCTGCAAAGA
ATCAAGACTGCCCTGAAGGACGTCCCTAACGTGGATCTGCTGAGCCCGTT
CCGCGTTCATCTGGTAGATTTTGCCGAGACGGGGCTCAAGATAACCGTCG
TTTGCTACTTTGCGACGAAGTCTTTCGACGAGTTTCTGTACCTACAGCAG
CTCGCTCTCCTCGAGGTCATGCGTGTCGCCCAAGGCGCTGGTGTAACGAT
GACGAGCGTGTTGCACGTAGATATGACCGACCCCTCCCCCATATCGGTGG
GCATGATTCATGATAATTTGGCGCAGTTGGATTCTACGAAGTTAGCTGCA
AGAGAGCATGATGGGCATAGCACGGCGGCGTTCGAGCAGGAACCCCTTCG
AAAGATAAACGGCGGTCTGGAGGAGACAAGCCGACCTACAAACGAAAGCG
GGGTTGCTTCCCGACCACGCGGGGGTTCGGTGTGAGTATTCTGACTCCCC
GAAAGTGTCCGAGGTCCTGCAAAGAATCAAGACTGCCCTGAAGGACGTCC
CTAACGTGGATCTGCTGAGCCCGTTCCGCGTTCATCTGGTAGATTTTGCC
GAGACGGGGCTCAAGATAACCGTCGTTTGCTACTTTGCGACGAAGTCTTT
CGACGAGTTTCTGTACCTACAGCAGCTCGCTCTCCTCGAGGTCATGCGTG
TCGCCCAAGGCGCTGGTGTAACGATGACGAGCGTGTTGCACGTAGATATG
ACCGACCCCTCCCCCATATCGGTGGGCATGATTCATGATAATTTGGCGCA
GTTGGATTCTACGAAGTTAGCTGCAAGAGAGCATGATGGGCATAGCACGG
CGGCGTTCGAGCAGGAACCCCTTCGAAAGATAAACGGCGGTCTGGAGGAG
ACAAGCCGACCTACAAACGAAAGCGGGGTTGCTTCCCGACCACGCGGGGG
TTCGGTGTGA
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