mRNA_H-elongata_contig106980.576.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106980.576.1
Unique NamemRNA_H-elongata_contig106980.576.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A6H5KGH1_9PHAE (SSD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGH1_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.430e-27
Identity = 59/66 (89.39%), Postives = 65/66 (98.48%), Query Frame = 1
Query:    1 KALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
            +AL+DIGVAVIHGGVSTFLAVVLLSLS+SYVFRVLFKQFF+TAVMGL HGLILLP+LLSL+GPSSY
Sbjct:  810 QALADIGVAVIHGGVSTFLAVVLLSLSASYVFRVLFKQFFATAVMGLGHGLILLPVLLSLVGPSSY 875          
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A7S2SME8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SME8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.230e-19
Identity = 44/64 (68.75%), Postives = 56/64 (87.50%), Query Frame = 1
Query:    7 LSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
            LSD+G AV++GG+STF AV+LLS S+SYVFRVLF+QFF T V+GL HG+ILLP+LLS +GP +Y
Sbjct:  634 LSDVGAAVLNGGLSTFFAVILLSASASYVFRVLFQQFFLTVVLGLGHGMILLPVLLSFLGPPAY 697          
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A7S2Y3B3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3B3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.210e-18
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    1 KALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
            KAL DIG AV++GG+STFLAVVLL  S SYVF   FK FF+T V+GL HG++LLP+LLSL+GP+ Y
Sbjct:  344 KALGDIGTAVLNGGLSTFLAVVLLGRSKSYVFITTFKLFFATVVLGLGHGMVLLPVLLSLVGPNPY 409          
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A7S1XPY4_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPY4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.930e-18
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    4 ALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
            ALSDIG AV++G +STFLAVVLLS S SYVFRVLFKQFF T V+G+ HG+I LP++L  +GP  Y
Sbjct:  835 ALSDIGAAVLNGAISTFLAVVLLSQSDSYVFRVLFKQFFVTCVLGVGHGMIFLPVMLYFLGPKPY 899          
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A7S2G6F6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G6F6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.370e-17
Identity = 43/65 (66.15%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    4 ALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
            AL+D+G AV++GG+STFLAV LL+ S+SYVF VLFKQFF T ++GL HGLILLP+LL+ +GP  Y
Sbjct:  787 ALADVGAAVLNGGISTFLAVSLLAGSASYVFVVLFKQFFLTVILGLVHGLILLPVLLAYVGPPCY 851          
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: UPI00142593C3 (patched domain-containing protein 3-like isoform X1 n=3 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142593C3)

HSP 1 Score: 80.9 bits (198), Expect = 3.090e-16
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 KALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
            KA++DIG AV +GG ST LA VLLSLSSSY+FR  FK FF   + GL HGL+LLP+LLS IGP+ Y
Sbjct:  776 KAITDIGPAVFNGGFSTLLAFVLLSLSSSYIFRTFFKIFFLVVLFGLFHGLVLLPVLLSWIGPAPY 841          
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A7S2DHD6_9EUKA (Hypothetical protein n=2 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DHD6_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 3.100e-16
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 KALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPS 192
            KAL ++G  V+HG  STFLAV++LS+S SY+FRV FK FF   V G+ HGL+LLP+LLSLIGP+
Sbjct:  939 KALEEMGTPVLHGAFSTFLAVLVLSVSKSYIFRVFFKMFFGICVFGVLHGLVLLPVLLSLIGPA 1002          
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A813INV5_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813INV5_POLGL)

HSP 1 Score: 79.3 bits (194), Expect = 1.070e-15
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    7 LSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
            L D+G AV+ GG STFLAV LL  S SYVFRVLF+ FF T V+GL+HGL+++P +LSL+GP  Y
Sbjct:  832 LGDVGSAVMKGGASTFLAVCLLGASKSYVFRVLFQTFFLTVVLGLSHGLLVMPAILSLVGPEGY 895          
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A813M0I9_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813M0I9_POLGL)

HSP 1 Score: 79.0 bits (193), Expect = 1.490e-15
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    7 LSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSSY 198
            L D+G AV+ GG STFLAV LL  S SYVFRVLF+ FF T ++GL+HGL+++P +LSL+GP  Y
Sbjct: 3588 LGDVGSAVMKGGASTFLAVCLLGASKSYVFRVLFQTFFLTVILGLSHGLLVMPAILSLVGPEGY 3651          
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Match: A0A7S4MYT4_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MYT4_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 1.560e-15
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    4 ALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHGLILLPILLSLIGPSS 195
            AL ++G AV+HG +STF AV++LS S SY+FRV FKQFF   + G AHGL  LP++LSLIGP  
Sbjct:  158 ALGEMGTAVVHGALSTFAAVLVLSTSKSYIFRVFFKQFFGICIFGAAHGLCFLPVMLSLIGPDQ 221          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106980.576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGH1_9PHAE3.430e-2789.39SSD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2SME8_9STRA3.230e-1968.75Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2Y3B3_9STRA2.210e-1866.67Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1XPY4_9STRA3.930e-1867.69Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7S2G6F6_9STRA1.370e-1766.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI00142593C33.090e-1665.15patched domain-containing protein 3-like isoform X... [more]
A0A7S2DHD6_9EUKA3.100e-1662.50Hypothetical protein n=2 Tax=Haptolina brevifila T... [more]
A0A813INV5_POLGL1.070e-1562.50Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
A0A813M0I9_POLGL1.490e-1560.94Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S4MYT4_9EUKA1.560e-1559.38Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106980contigH-elongata_contig106980:1367..2222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue2.3e-22
Seed eggNOG ortholog2880.D7FVR4
Preferred namePTCHD3
KEGG koko:K12385
KEGG TC2.A.6.6
KEGG Pathwayko04142,ko04979,map04142,map04979
EggNOG free text desc.cellular response to sterol depletion
EggNOG OGsKOG1933@1,KOG1933@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categorysignal peptide
Exons2
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929600.1581187-CDS-H-elongata_contig106980:1366..14651622929600.1581187-CDS-H-elongata_contig106980:1366..1465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106980 1367..1465 +
1691679086.5053146-CDS-H-elongata_contig106980:1366..14651691679086.5053146-CDS-H-elongata_contig106980:1366..1465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106980 1367..1465 +
1622929600.1722183-CDS-H-elongata_contig106980:2117..22221622929600.1722183-CDS-H-elongata_contig106980:2117..2222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106980 2118..2222 +
1691679086.5155559-CDS-H-elongata_contig106980:2117..22221691679086.5155559-CDS-H-elongata_contig106980:2117..2222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106980 2118..2222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106980.576.1prot_H-elongata_contig106980.576.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106980 1367..2222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106980.576.1

>prot_H-elongata_contig106980.576.1 ID=prot_H-elongata_contig106980.576.1|Name=mRNA_H-elongata_contig106980.576.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
KALSDIGVAVIHGGVSTFLAVVLLSLSSSYVFRVLFKQFFSTAVMGLAHG
LILLPILLSLIGPSSYL*
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mRNA from alignment at H-elongata_contig106980:1367..2222+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106980.576.1 ID=mRNA_H-elongata_contig106980.576.1|Name=mRNA_H-elongata_contig106980.576.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=856bp|location=Sequence derived from alignment at H-elongata_contig106980:1367..2222+ (Himanthalia elongata Himel1 dioecious)
AAGGCCCTGTCCGACATCGGCGTGGCCGTCATCCACGGAGGCGTTTCGAC CTTCTTAGCCGTAGTGCTTCTCTCTCTGTCTTCTTCGTACGTTTTCAGGG TGAGTGGATGTTGTAGTAGCGCCAATGTAGTAGCGCCAAATGCAGCATGT AATGAGATTGAGTAACATTTTTGTTGAGAAAAAAAGAAAAAGAAAATATC TCCCCCTTCACGGGGAGCCCTAATTGTAGGTCTGGACCTACATAGAATAT TGTAGTTCGTTCACGCCTAGCGTAGAAACCCTCGGGGATGATACCTTCAT GTCCCCGTAGGGTAGAAAGTTGCAAAAAACGGTGATTTCATGCAGAGTAA AATAGCTGTTTCTCTGAAACCAATATATAGTGGGTGACCCAACCCGCCCC TAACCCTAACCCACACCCACACCCAACCACCCATGGGGTGTAAATAGGGT GCTGAGGGGGGACACGAAGGTATCGTCCCCGGGGTTTCTACCCTAGGCGT GAACGAACTACAATATTCTATGTAGCTCCAGATCTACAATTAGGGCTCGC CCTCCTTCACCTCCTCCTCTTCCACGAACACAGCAAGTGGCAAAGGAATT TAATCCGTAATCACATTTTTATGTATGTATACACACACACACACACACAC ACACACACACACACACACACACACCTTAACTTTGTCGAACATGCCACTGC TATTGTTGTGGTCATTTGCCTCTCTCGTTCTCTCCCCGTCTCTCTTTGCA GGTGCTCTTTAAGCAGTTTTTCTCTACCGCGGTGATGGGCCTTGCTCACG GGCTCATTCTCCTGCCAATTTTGCTCAGCCTTATCGGACCGAGTTCCTAC CTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig106980:1367..2222+

>mRNA_H-elongata_contig106980.576.1 ID=mRNA_H-elongata_contig106980.576.1|Name=mRNA_H-elongata_contig106980.576.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig106980:1367..2222+ (Himanthalia elongata Himel1 dioecious)
AAGGCCCTGTCCGACATCGGCGTGGCCGTCATCCACGGAGGCGTTTCGAC
CTTCTTAGCCGTAGTGCTTCTCTCTCTGTCTTCTTCGTACGTTTTCAGGA
AGGCCCTGTCCGACATCGGCGTGGCCGTCATCCACGGAGGCGTTTCGACC
TTCTTAGCCGTAGTGCTTCTCTCTCTGTCTTCTTCGTACGTTTTCAGGGT
GCTCTTTAAGCAGTTTTTCTCTACCGCGGTGATGGGCCTTGCTCACGGGC
TCATTCTCCTGCCAATTTTGCTCAGCCTTATCGGACCGAGTTCCTACCTG
TGAGTGCTCTTTAAGCAGTTTTTCTCTACCGCGGTGATGGGCCTTGCTCA
CGGGCTCATTCTCCTGCCAATTTTGCTCAGCCTTATCGGACCGAGTTCCT
ACCTGTGA
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