mRNA_H-elongata_contig106964.573.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106964.573.1
Unique NamemRNA_H-elongata_contig106964.573.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: D7G144_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G144_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.630e-42
Identity = 80/100 (80.00%), Postives = 91/100 (91.00%), Query Frame = 1
Query:    1 FVAQTLSLCVCVAVGFCVGIVGVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALVGPTV 300
            F+ ++ SL +CV VGF VG+VGV F+  DTWPTHEME+RG+AWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTG+C+AVAL+GP V
Sbjct:  690 FLVESFSLLICVGVGFLVGMVGVNFIEADTWPTHEMETRGNAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGLCLAVALIGPAV 789          
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A6H5KJ96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ96_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.090e-41
Identity = 79/100 (79.00%), Postives = 89/100 (89.00%), Query Frame = 1
Query:    1 FVAQTLSLCVCVAVGFCVGIVGVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALVGPTV 300
            F+ ++ SL +CV VGF VGIVGV F+  DTWPTHEME+RG+ WGLLTGI IAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTG+C+AVAL+GP V
Sbjct:  709 FLVESFSLLICVGVGFLVGIVGVNFIEADTWPTHEMETRGNPWGLLTGIVIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGLCLAVALIGPAV 808          
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A7S1YA91_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YA91_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.030e-25
Identity = 59/87 (67.82%), Postives = 67/87 (77.01%), Query Frame = 1
Query:   13 TLSLCVCVAVGFCVGIVGVFF-LSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGIC 270
            +LSL  CV +G  VGI   F  L+E+TWPT+EM+ RG   GLLTGIAIAIPSGM V LSIL  N +SLVGVAISASLLPPAVN G+C
Sbjct:    1 SLSLLGCVLIGALVGIGAAFTPLAEETWPTNEMQIRGDPTGLLTGIAIAIPSGMGVCLSILGGNTSSLVGVAISASLLPPAVNAGVC 87          
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A7S3UPM3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPM3_HETAK)

HSP 1 Score: 94.4 bits (233), Expect = 2.550e-22
Identity = 55/96 (57.29%), Postives = 65/96 (67.71%), Query Frame = 1
Query:   10 QTLSLCVCVAVGFCVGIVGVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALVGPT 297
            +  SL +CV +G  V  V   F  ++ WPT EME RGS  GL  GIAIA+PSGM VALSIL  N +SLVGVAISASLLPPAVN G+ +  A +  T
Sbjct:    6 EIFSLLLCVFMGIVVACVSYPFDVDELWPTAEMEGRGSWMGLNLGIAIAVPSGMGVALSILGNNTSSLVGVAISASLLPPAVNCGMLLTFAALAST 101          
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A7S2XSZ6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSZ6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.360e-21
Identity = 53/90 (58.89%), Postives = 63/90 (70.00%), Query Frame = 1
Query:    1 FVAQTLSLCVCVAVGFCVGIVGVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGIC 270
            F  +  +L +C+ VG  + +   F  S + WPT+EM+ RG   GL TGIAIAIPSGM V+LSIL  N  SLVGVAISASLLPPAVN GIC
Sbjct:  451 FKVEIYALGICIFVGVSIALTAGFTDSAELWPTNEMQIRGDVEGLYTGIAIAIPSGMGVSLSILGGNTGSLVGVAISASLLPPAVNAGIC 540          
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A0L0G727_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G727_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 1.160e-20
Identity = 58/100 (58.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 FVAQTLSLCVCVAVGFCVGIVGVFFLSEDTW--PTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALVGP 294
            F+ + +SL +CV  GF +G+V    L  D+W  PT+EM SRG+    L  I IAIPSG  VALSIL  N +SLVGVAISASLLPPAVN GI  A A+VGP
Sbjct:  320 FLMECVSLLMCVVTGFIIGLV-FCTLGYDSWGWPTNEMSSRGTWQACLVSITIAIPSGAGVALSILGNNTSSLVGVAISASLLPPAVNAGILWAYAIVGP 418          
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A2C9JH57_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JH57_BIOGL)

HSP 1 Score: 94.7 bits (234), Expect = 1.640e-20
Identity = 55/103 (53.40%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    1 FVAQTLSLCVCVAVGFCVGIV-------GVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALV 288
            F ++   LC+C+ +GF  G +       G+ + + D WPT EM SRGS   LL G+ IAIPSG  VALSIL   V SLVGVAISASLLPPAVN G+  A A+V
Sbjct:  385 FTSEMKGLCLCILIGFATGFIPAILESAGLQWRATDNWPTIEMSSRGSLRSLLVGVLIAIPSGAGVALSILGGKVGSLVGVAISASLLPPAVNAGLLWANAIV 487          
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A210PY32_MIZYE (Uncharacterized protein n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PY32_MIZYE)

HSP 1 Score: 94.0 bits (232), Expect = 3.100e-20
Identity = 56/100 (56.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   10 QTLSLCVCVAVGFCVGIV-------GVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALV 288
            + LSL +CV +G   G+V       G F+ S D WPT EM+SRG    L TGI IA+PSG  VALSIL  N  SLVGVAISASLLPPAVN G+  A A++
Sbjct:  526 EVLSLLICVGMGLAWGLVCGGVCKDGAFWGSTDAWPTSEMKSRGMTRSLWTGILIALPSGAGVALSILGGNTGSLVGVAISASLLPPAVNAGMLWASAII 625          
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A0L0D8F2_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D8F2_THETB)

HSP 1 Score: 93.6 bits (231), Expect = 4.120e-20
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 1
Query:   10 QTLSLCVCVAVGFCVGIVGVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALVGPT 297
            + + L +C  VG  VG+    +  +  WP  EM SRG+  GLL GIAIA+PSG+ VALS +S+N NSLVGVAISASLLPPAVN G+    A+VG T
Sbjct:  393 ELVGLAICFVVGGLVGLGFAAWGDDLDWPNSEMSSRGTGVGLLIGIAIAVPSGVGVALSTISQNTNSLVGVAISASLLPPAVNAGLNFCYAVVGQT 488          
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: R7UPH3_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UPH3_CAPTE)

HSP 1 Score: 93.6 bits (231), Expect = 4.170e-20
Identity = 55/100 (55.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   10 QTLSLCVCVAVGFCVGIV-------GVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALV 288
            + + L +C+ VGF  G++       G F+ S DTWPT EM SRG    L  G+ IA+PSG  VALSIL  N  SLVGVAISASLLPPAVN G+  A ALV
Sbjct:  353 ELIGLSICLVVGFIFGLITAAANANGAFWGSTDTWPTAEMSSRGMLRSLWVGVLIALPSGAGVALSILGGNAGSLVGVAISASLLPPAVNAGMLWAYALV 452          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G144_ECTSI1.630e-4280.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ96_9PHAE1.090e-4179.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1YA91_9STRA5.030e-2567.82Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3UPM3_HETAK2.550e-2257.29Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XSZ6_9STRA1.360e-2158.89Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A0L0G727_9EUKA1.160e-2058.00Uncharacterized protein (Fragment) n=1 Tax=Sphaero... [more]
A0A2C9JH57_BIOGL1.640e-2053.40Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A210PY32_MIZYE3.100e-2056.00Uncharacterized protein n=1 Tax=Mizuhopecten yesso... [more]
A0A0L0D8F2_THETB4.120e-2055.21Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
R7UPH3_CAPTE4.170e-2055.00Uncharacterized protein n=1 Tax=Capitella teleta T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106964contigH-elongata_contig106964:1240..1983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue4.2e-36
Seed eggNOG ortholog2880.D7G144
GOsGO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0022008,GO:0030154,GO:0032501,GO:0032502,GO:0048731,GO:0048856,GO:0048869
EggNOG free text desc.Domain of unknown function (DUF389)
EggNOG OGs2QWS6@2759,COG1808@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929599.7598498-CDS-H-elongata_contig106964:1239..14331622929599.7598498-CDS-H-elongata_contig106964:1239..1433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106964 1240..1433 +
1691679086.298603-CDS-H-elongata_contig106964:1239..14331691679086.298603-CDS-H-elongata_contig106964:1239..1433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106964 1240..1433 +
1622929599.774377-CDS-H-elongata_contig106964:1871..19831622929599.774377-CDS-H-elongata_contig106964:1871..1983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106964 1872..1983 +
1691679086.3105555-CDS-H-elongata_contig106964:1871..19831691679086.3105555-CDS-H-elongata_contig106964:1871..1983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106964 1872..1983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106964.573.1prot_H-elongata_contig106964.573.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106964 1240..1983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106964.573.1

>prot_H-elongata_contig106964.573.1 ID=prot_H-elongata_contig106964.573.1|Name=mRNA_H-elongata_contig106964.573.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
FVAQTLSLCVCVAVGFCVGIVGVFFLSEDTWPTHEMESRGSAWGLLTGIA
IAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALVGPTV
LT
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mRNA from alignment at H-elongata_contig106964:1240..1983+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106964.573.1 ID=mRNA_H-elongata_contig106964.573.1|Name=mRNA_H-elongata_contig106964.573.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=744bp|location=Sequence derived from alignment at H-elongata_contig106964:1240..1983+ (Himanthalia elongata Himel1 dioecious)
TTTGTTGCACAGACGCTCTCGCTGTGCGTGTGTGTTGCGGTGGGTTTTTG CGTGGGCATCGTGGGCGTGTTTTTCCTGAGCGAGGACACGTGGCCCACAC ACGAGATGGAGAGTCGCGGCAGCGCCTGGGGGCTGCTGACGGGAATCGCC ATCGCGATACCCTCCGGCATGGCGGTGGCCCTTTCCATCTTGAGGTGATT GGTTGCGTTCCCGTCTTGAGTTGAGCTTGCCATGTATCAAAACATATGAA ATCATTCCAATATGTTTCTTCATTAGCAAGCAAACCGTGACAGCAAGGCA AGGCTGTGTGTACAGCAAACACTCACTTTTTTTCTTCCTGTGTGGAGAGT TGCTGAGCTGTTGCGCTGTGTGTGTGTGTTGTCGGTCTTTTTCTCTCTCT GTGTGTCTACCTCTGTGTCCTTGCGTTGTGTCATGCGTATAATATGTGGG AGTGCTCGAAGCCATAACGGTGTCGATATGCTCGCCAGGCTCTACGAAAC CCTCCCGCCGGCCTACCCGTTCCGCGACGGGACAGATAACCTGTAAAGTC TGAACTCCACCACTTTGCTCCTTGCCGCCGCCGCTGCCACCACCCCTTCT TCCCTCCCCGTGTCGGCCTTCCAACCTCGTAGCAAGAACGTGAACAGCCT GGTGGGTGTGGCAATTTCAGCGTCTCTCTTGCCCCCTGCGGTGAACACGG GGATATGCATGGCCGTTGCTCTCGTGGGACCCACCGTGTTGACC
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Coding sequence (CDS) from alignment at H-elongata_contig106964:1240..1983+

>mRNA_H-elongata_contig106964.573.1 ID=mRNA_H-elongata_contig106964.573.1|Name=mRNA_H-elongata_contig106964.573.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig106964:1240..1983+ (Himanthalia elongata Himel1 dioecious)
TTTGTTGCACAGACGCTCTCGCTGTGCGTGTGTGTTGCGGTGGGTTTTTG
CGTGGGCATCGTGGGCGTGTTTTTCCTGAGCGAGGACACGTGGCCCACAC
ACGAGATGGAGAGTCGCGGCAGCGCCTGGGGGCTGCTGACGGGAATCGCC
ATCGCGATACCCTCCGGCATGGCGGTGGCCCTTTCCATCTTGAGTTTGTT
GCACAGACGCTCTCGCTGTGCGTGTGTGTTGCGGTGGGTTTTTGCGTGGG
CATCGTGGGCGTGTTTTTCCTGAGCGAGGACACGTGGCCCACACACGAGA
TGGAGAGTCGCGGCAGCGCCTGGGGGCTGCTGACGGGAATCGCCATCGCG
ATACCCTCCGGCATGGCGGTGGCCCTTTCCATCTTGAGCAAGAACGTGAA
CAGCCTGGTGGGTGTGGCAATTTCAGCGTCTCTCTTGCCCCCTGCGGTGA
ACACGGGGATATGCATGGCCGTTGCTCTCGTGGGACCCACCGTGTTGACC
CAAGAACGTGAACAGCCTGGTGGGTGTGGCAATTTCAGCGTCTCTCTTGC
CCCCTGCGGTGAACACGGGGATATGCATGGCCGTTGCTCTCGTGGGACCC
ACCGTGTTGACC
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