mRNA_H-elongata_contig106964.573.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: D7G144_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G144_ECTSI) HSP 1 Score: 157 bits (397), Expect = 1.630e-42 Identity = 80/100 (80.00%), Postives = 91/100 (91.00%), Query Frame = 1
Query: 1 FVAQTLSLCVCVAVGFCVGIVGVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALVGPTV 300
F+ ++ SL +CV VGF VG+VGV F+ DTWPTHEME+RG+AWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTG+C+AVAL+GP V
Sbjct: 690 FLVESFSLLICVGVGFLVGMVGVNFIEADTWPTHEMETRGNAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGLCLAVALIGPAV 789
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A6H5KJ96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ96_9PHAE) HSP 1 Score: 155 bits (391), Expect = 1.090e-41 Identity = 79/100 (79.00%), Postives = 89/100 (89.00%), Query Frame = 1
Query: 1 FVAQTLSLCVCVAVGFCVGIVGVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALVGPTV 300
F+ ++ SL +CV VGF VGIVGV F+ DTWPTHEME+RG+ WGLLTGI IAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTG+C+AVAL+GP V
Sbjct: 709 FLVESFSLLICVGVGFLVGIVGVNFIEADTWPTHEMETRGNPWGLLTGIVIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGLCLAVALIGPAV 808
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A7S1YA91_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YA91_9STRA) HSP 1 Score: 104 bits (260), Expect = 5.030e-25 Identity = 59/87 (67.82%), Postives = 67/87 (77.01%), Query Frame = 1
Query: 13 TLSLCVCVAVGFCVGIVGVFF-LSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGIC 270
+LSL CV +G VGI F L+E+TWPT+EM+ RG GLLTGIAIAIPSGM V LSIL N +SLVGVAISASLLPPAVN G+C
Sbjct: 1 SLSLLGCVLIGALVGIGAAFTPLAEETWPTNEMQIRGDPTGLLTGIAIAIPSGMGVCLSILGGNTSSLVGVAISASLLPPAVNAGVC 87
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A7S3UPM3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPM3_HETAK) HSP 1 Score: 94.4 bits (233), Expect = 2.550e-22 Identity = 55/96 (57.29%), Postives = 65/96 (67.71%), Query Frame = 1
Query: 10 QTLSLCVCVAVGFCVGIVGVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALVGPT 297
+ SL +CV +G V V F ++ WPT EME RGS GL GIAIA+PSGM VALSIL N +SLVGVAISASLLPPAVN G+ + A + T
Sbjct: 6 EIFSLLLCVFMGIVVACVSYPFDVDELWPTAEMEGRGSWMGLNLGIAIAVPSGMGVALSILGNNTSSLVGVAISASLLPPAVNCGMLLTFAALAST 101
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A7S2XSZ6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSZ6_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.360e-21 Identity = 53/90 (58.89%), Postives = 63/90 (70.00%), Query Frame = 1
Query: 1 FVAQTLSLCVCVAVGFCVGIVGVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGIC 270
F + +L +C+ VG + + F S + WPT+EM+ RG GL TGIAIAIPSGM V+LSIL N SLVGVAISASLLPPAVN GIC
Sbjct: 451 FKVEIYALGICIFVGVSIALTAGFTDSAELWPTNEMQIRGDVEGLYTGIAIAIPSGMGVSLSILGGNTGSLVGVAISASLLPPAVNAGIC 540
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A0L0G727_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G727_9EUKA) HSP 1 Score: 95.1 bits (235), Expect = 1.160e-20 Identity = 58/100 (58.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query: 1 FVAQTLSLCVCVAVGFCVGIVGVFFLSEDTW--PTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALVGP 294
F+ + +SL +CV GF +G+V L D+W PT+EM SRG+ L I IAIPSG VALSIL N +SLVGVAISASLLPPAVN GI A A+VGP
Sbjct: 320 FLMECVSLLMCVVTGFIIGLV-FCTLGYDSWGWPTNEMSSRGTWQACLVSITIAIPSGAGVALSILGNNTSSLVGVAISASLLPPAVNAGILWAYAIVGP 418
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A2C9JH57_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JH57_BIOGL) HSP 1 Score: 94.7 bits (234), Expect = 1.640e-20 Identity = 55/103 (53.40%), Postives = 67/103 (65.05%), Query Frame = 1
Query: 1 FVAQTLSLCVCVAVGFCVGIV-------GVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALV 288
F ++ LC+C+ +GF G + G+ + + D WPT EM SRGS LL G+ IAIPSG VALSIL V SLVGVAISASLLPPAVN G+ A A+V
Sbjct: 385 FTSEMKGLCLCILIGFATGFIPAILESAGLQWRATDNWPTIEMSSRGSLRSLLVGVLIAIPSGAGVALSILGGKVGSLVGVAISASLLPPAVNAGLLWANAIV 487
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A210PY32_MIZYE (Uncharacterized protein n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PY32_MIZYE) HSP 1 Score: 94.0 bits (232), Expect = 3.100e-20 Identity = 56/100 (56.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query: 10 QTLSLCVCVAVGFCVGIV-------GVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALV 288
+ LSL +CV +G G+V G F+ S D WPT EM+SRG L TGI IA+PSG VALSIL N SLVGVAISASLLPPAVN G+ A A++
Sbjct: 526 EVLSLLICVGMGLAWGLVCGGVCKDGAFWGSTDAWPTSEMKSRGMTRSLWTGILIALPSGAGVALSILGGNTGSLVGVAISASLLPPAVNAGMLWASAII 625
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: A0A0L0D8F2_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D8F2_THETB) HSP 1 Score: 93.6 bits (231), Expect = 4.120e-20 Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 1
Query: 10 QTLSLCVCVAVGFCVGIVGVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALVGPT 297
+ + L +C VG VG+ + + WP EM SRG+ GLL GIAIA+PSG+ VALS +S+N NSLVGVAISASLLPPAVN G+ A+VG T
Sbjct: 393 ELVGLAICFVVGGLVGLGFAAWGDDLDWPNSEMSSRGTGVGLLIGIAIAVPSGVGVALSTISQNTNSLVGVAISASLLPPAVNAGLNFCYAVVGQT 488
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Match: R7UPH3_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UPH3_CAPTE) HSP 1 Score: 93.6 bits (231), Expect = 4.170e-20 Identity = 55/100 (55.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query: 10 QTLSLCVCVAVGFCVGIV-------GVFFLSEDTWPTHEMESRGSAWGLLTGIAIAIPSGMAVALSILSKNVNSLVGVAISASLLPPAVNTGICMAVALV 288
+ + L +C+ VGF G++ G F+ S DTWPT EM SRG L G+ IA+PSG VALSIL N SLVGVAISASLLPPAVN G+ A ALV
Sbjct: 353 ELIGLSICLVVGFIFGLITAAANANGAFWGSTDTWPTAEMSSRGMLRSLWVGVLIALPSGAGVALSILGGNAGSLVGVAISASLLPPAVNAGMLWAYALV 452 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106964.573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig106964.573.1 >prot_H-elongata_contig106964.573.1 ID=prot_H-elongata_contig106964.573.1|Name=mRNA_H-elongata_contig106964.573.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp FVAQTLSLCVCVAVGFCVGIVGVFFLSEDTWPTHEMESRGSAWGLLTGIAback to top mRNA from alignment at H-elongata_contig106964:1240..1983+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig106964.573.1 ID=mRNA_H-elongata_contig106964.573.1|Name=mRNA_H-elongata_contig106964.573.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=744bp|location=Sequence derived from alignment at H-elongata_contig106964:1240..1983+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig106964:1240..1983+ >mRNA_H-elongata_contig106964.573.1 ID=mRNA_H-elongata_contig106964.573.1|Name=mRNA_H-elongata_contig106964.573.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig106964:1240..1983+ (Himanthalia elongata Himel1 dioecious)back to top |