mRNA_H-elongata_contig106917.569.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106917.569.1
Unique NamemRNA_H-elongata_contig106917.569.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106917.569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106917contigH-elongata_contig106917:600..1328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size730
Cds size729
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929599.2027686-CDS-H-elongata_contig106917:599..13281622929599.2027686-CDS-H-elongata_contig106917:599..1328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106917 600..1328 +
1691679086.00179-CDS-H-elongata_contig106917:599..13281691679086.00179-CDS-H-elongata_contig106917:599..1328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106917 600..1328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106917.569.1prot_H-elongata_contig106917.569.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106917 600..1328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106917.569.1

>prot_H-elongata_contig106917.569.1 ID=prot_H-elongata_contig106917.569.1|Name=mRNA_H-elongata_contig106917.569.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp
DDSNEDGSDEVGGDEGEDEEGDCCGDDDDADEMTDSGSSENDSVLAGFDA
RESLSDADDDVDDDDGFTAGGAVRVQSGSSARKSFVSNGDGAKDETSPKP
GGKSRRKTMFEEMRRESLAGSLQQVGGRPGQRQRRMSNENEESLEKMALL
SEEEEEEEEDVVRKHERERRKSSFRSSKSRGNRLSKQSVGDGEGDSGDFL
EASADSEEEEEDDANGEEDDYDSDVDQEDEAGADPRFLIYFWA
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mRNA from alignment at H-elongata_contig106917:600..1328+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106917.569.1 ID=mRNA_H-elongata_contig106917.569.1|Name=mRNA_H-elongata_contig106917.569.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=729bp|location=Sequence derived from alignment at H-elongata_contig106917:600..1328+ (Himanthalia elongata Himel1 dioecious)
GACGATTCAAACGAAGACGGCAGCGATGAAGTTGGTGGTGATGAGGGCGA
GGACGAGGAAGGAGATTGCTGCGGTGATGACGACGACGCGGACGAAATGA
CCGATTCGGGCTCATCCGAGAACGATTCGGTTCTCGCGGGTTTTGACGCG
CGGGAGAGCTTGAGCGATGCTGATGACGATGTCGACGATGATGATGGTTT
TACTGCCGGGGGAGCAGTCCGAGTCCAGAGTGGGAGCAGTGCGAGGAAGT
CGTTTGTATCGAACGGGGATGGGGCAAAAGACGAAACGTCTCCCAAGCCC
GGTGGCAAGAGCCGAAGGAAGACGATGTTTGAGGAGATGAGGAGGGAGAG
CCTGGCGGGATCTCTGCAGCAGGTCGGTGGCAGGCCAGGTCAGCGGCAGA
GGAGAATGTCTAACGAAAACGAGGAAAGCTTGGAGAAGATGGCGCTCCTG
TCTGAGGAAGAGGAGGAAGAGGAAGAAGACGTTGTTAGAAAACATGAGAG
AGAAAGGCGCAAGAGTAGTTTCCGCTCGAGCAAGTCTCGGGGGAATCGAC
TGTCCAAGCAGAGCGTCGGGGACGGAGAGGGAGATTCCGGTGATTTCTTG
GAAGCTTCTGCGGACAGCGAGGAAGAGGAAGAAGATGACGCCAACGGCGA
GGAGGATGATTATGATAGCGATGTCGATCAAGAGGACGAGGCCGGGGCTG
ACCCGCGGTTCTTGATCTACTTCTGGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig106917:600..1328+

>mRNA_H-elongata_contig106917.569.1 ID=mRNA_H-elongata_contig106917.569.1|Name=mRNA_H-elongata_contig106917.569.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig106917:600..1328+ (Himanthalia elongata Himel1 dioecious)
GACGATTCAAACGAAGACGGCAGCGATGAAGTTGGTGGTGATGAGGGCGA
GGACGAGGAAGGAGATTGCTGCGGTGATGACGACGACGCGGACGAAATGA
CCGATTCGGGCTCATCCGAGAACGATTCGGTTCTCGCGGGTTTTGACGCG
CGGGAGAGCTTGAGCGATGCTGATGACGATGTCGACGATGATGATGGTTT
TACTGCCGGGGGAGCAGTCCGAGTCCAGAGTGGGAGCAGTGCGAGGAAGT
CGTTTGTATCGAACGGGGATGGGGCAAAAGACGAAACGTCTCCCAAGCCC
GGTGGCAAGAGCCGAAGGAAGACGATGTTTGAGGAGATGAGGAGGGAGAG
CCTGGCGGGATCTCTGCAGCAGGTCGGTGGCAGGCCAGGTCAGCGGCAGA
GGAGAATGTCTAACGAAAACGAGGAAAGCTTGGAGAAGATGGCGCTCCTG
TCTGAGGAAGAGGAGGAAGAGGAAGAAGACGTTGTTAGAAAACATGAGAG
AGAAAGGCGCAAGAGTAGTTTCCGCTCGAGCAAGTCTCGGGGGAATCGAC
TGTCCAAGCAGAGCGTCGGGGACGGAGAGGGAGATTCCGGTGATTTCTTG
GAAGCTTCTGCGGACAGCGAGGAAGAGGAAGAAGATGACGCCAACGGCGA
GGAGGATGATTATGATAGCGATGTCGATCAAGAGGACGAGGCCGGGGCTG
ACCCGCGGTTCTTGATCTACTTCTGGGCGGACGATTCAAACGAAGACGGC
AGCGATGAAGTTGGTGGTGATGAGGGCGAGGACGAGGAAGGAGATTGCTG
CGGTGATGACGACGACGCGGACGAAATGACCGATTCGGGCTCATCCGAGA
ACGATTCGGTTCTCGCGGGTTTTGACGCGCGGGAGAGCTTGAGCGATGCT
GATGACGATGTCGACGATGATGATGGTTTTACTGCCGGGGGAGCAGTCCG
AGTCCAGAGTGGGAGCAGTGCGAGGAAGTCGTTTGTATCGAACGGGGATG
GGGCAAAAGACGAAACGTCTCCCAAGCCCGGTGGCAAGAGCCGAAGGAAG
ACGATGTTTGAGGAGATGAGGAGGGAGAGCCTGGCGGGATCTCTGCAGCA
GGTCGGTGGCAGGCCAGGTCAGCGGCAGAGGAGAATGTCTAACGAAAACG
AGGAAAGCTTGGAGAAGATGGCGCTCCTGTCTGAGGAAGAGGAGGAAGAG
GAAGAAGACGTTGTTAGAAAACATGAGAGAGAAAGGCGCAAGAGTAGTTT
CCGCTCGAGCAAGTCTCGGGGGAATCGACTGTCCAAGCAGAGCGTCGGGG
ACGGAGAGGGAGATTCCGGTGATTTCTTGGAAGCTTCTGCGGACAGCGAG
GAAGAGGAAGAAGATGACGCCAACGGCGAGGAGGATGATTATGATAGCGA
TGTCGATCAAGAGGACGAGGCCGGGGCTGACCCGCGGTTCTTGATCTACT
TCTGGGCG
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