mRNA_H-elongata_contig1069.568.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: D7FVL9_ECTSI (Xel-1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL9_ECTSI) HSP 1 Score: 110 bits (274), Expect = 8.760e-27 Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 1
Query: 1 QNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
+NMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAAT+AINGMAIDRKRIKV
Sbjct: 125 RNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATLAINGMAIDRKRIKV 181
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: A0A836CBL9_9STRA (RNA-binding domain of Hu antigen C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL9_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 7.430e-10 Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 7 MFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
+FA +G +AH KVV DR+TG S+GYGFV+F AAAA A++G + KRI+V
Sbjct: 20 LFAPYGAVAHAKVVRDRATGGSLGYGFVRFARAAGAAAAATALDGARVGDKRIRV 74
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: A0A445E4B6_ARAHY (RRM domain-containing protein n=6 Tax=Arachis TaxID=3817 RepID=A0A445E4B6_ARAHY) HSP 1 Score: 57.4 bits (137), Expect = 5.780e-9 Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 1 QNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKVC 174
++ F HG+L VKV+ D TGKS GYGFV+FTT +AA ++ ID +RI+VC
Sbjct: 72 RDAFEQHGELIEVKVICDHVTGKSKGYGFVRFTTETSAATGRKEMHKKIIDGRRIRVC 129
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: A0A7S2UXK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXK6_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 6.160e-9 Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 7 MFAVHGDLAHVKVVYDRST-GKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
+F HG++AH+K+V DR+ KS+G+GFVK++T AAAA A NG+ I K+IKV
Sbjct: 54 LFEPHGEIAHLKIVMDRAVPNKSLGFGFVKYSTEAQAAAAIEAKNGLQIGTKKIKV 109
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: A0A0B2RIG3_GLYSO (Glycine-rich RNA-binding protein 2, mitochondrial n=5 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A0B2RIG3_GLYSO) HSP 1 Score: 57.4 bits (137), Expect = 7.130e-9 Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 1 QNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
++ F HG++ VKV+ D TGKS GYGFV+F + AAAA +NG +D +RI+V
Sbjct: 75 RDAFGQHGEIIEVKVICDHVTGKSRGYGFVRFVSETTAAAARKEMNGQILDGRRIRV 131
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: A0A522YMU6_9BACT (RNA-binding protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A522YMU6_9BACT) HSP 1 Score: 56.6 bits (135), Expect = 1.000e-8 Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 1 QNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
QN+FA HG++ K+V D+ TG+S G+GFV+ T E A AA A+NG +D + I V
Sbjct: 18 QNLFAQHGEVTSAKIVTDKFTGRSKGFGFVEMATAEQANAAIAALNGTELDGRNIVV 74
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: A0A3M1D5U1_9DELT (RNA-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1D5U1_9DELT) HSP 1 Score: 55.8 bits (133), Expect = 1.120e-8 Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 10 FAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
FA HGD+ KV+ DR +G+S G+GFV +E AAAAT +++G +D + I+V
Sbjct: 23 FAAHGDVTEAKVILDRDSGRSRGFGFVTMGNSEQAAAATASLDGQPLDGRTIRV 76
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: A0A2E8S2G3_9DELT (RNA-binding protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E8S2G3_9DELT) HSP 1 Score: 55.8 bits (133), Expect = 1.150e-8 Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 1 QNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
+N FAVHG ++ KV+ DR TG+S G+GFV F +A+AA A+NG +D + I+V
Sbjct: 19 KNHFAVHGAVSEAKVITDRETGRSRGFGFVTFEDAASASAAKEALNGSELDGRTIRV 75
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: UPI000414CB0C (RNA-binding protein n=1 Tax=Spirochaeta cellobiosiphila TaxID=504483 RepID=UPI000414CB0C) HSP 1 Score: 55.5 bits (132), Expect = 1.210e-8 Identity = 26/57 (45.61%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 1 QNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
++ F+ +GD+A VK++ DR TG+S G+GFV+ T EAAA+A A+NG + + +KV
Sbjct: 19 RDAFSEYGDVASVKIIMDRDTGRSKGFGFVEMETEEAAASAIEALNGAELIGRPLKV 75
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: F8EY47_TRECH (RNP-1 like RNA-binding protein n=4 Tax=Treponema TaxID=157 RepID=F8EY47_TRECH) HSP 1 Score: 55.5 bits (132), Expect = 1.420e-8 Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 1 QNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
+N+FA +G++ VK++ DR TG S G+GFV+ +T+ A AA A NG D +R+KV
Sbjct: 20 RNLFASYGNVESVKIITDRDTGYSKGFGFVEMSTDAEAQAAIAATNGFEFDGRRLKV 76 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1069.568.1 >prot_H-elongata_contig1069.568.1 ID=prot_H-elongata_contig1069.568.1|Name=mRNA_H-elongata_contig1069.568.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp MFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRback to top mRNA from alignment at H-elongata_contig1069:16678..16851+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1069.568.1 ID=mRNA_H-elongata_contig1069.568.1|Name=mRNA_H-elongata_contig1069.568.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig1069:16678..16851+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1069:16678..16851+ >mRNA_H-elongata_contig1069.568.1 ID=mRNA_H-elongata_contig1069.568.1|Name=mRNA_H-elongata_contig1069.568.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig1069:16678..16851+ (Himanthalia elongata Himel1 dioecious)back to top |