mRNA_H-elongata_contig1069.568.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1069.568.1
Unique NamemRNA_H-elongata_contig1069.568.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: D7FVL9_ECTSI (Xel-1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL9_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 8.760e-27
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 1
Query:    1 QNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
            +NMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAAT+AINGMAIDRKRIKV
Sbjct:  125 RNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATLAINGMAIDRKRIKV 181          
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: A0A836CBL9_9STRA (RNA-binding domain of Hu antigen C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.430e-10
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    7 MFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
            +FA +G +AH KVV DR+TG S+GYGFV+F     AAAA  A++G  +  KRI+V
Sbjct:   20 LFAPYGAVAHAKVVRDRATGGSLGYGFVRFARAAGAAAAATALDGARVGDKRIRV 74          
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: A0A445E4B6_ARAHY (RRM domain-containing protein n=6 Tax=Arachis TaxID=3817 RepID=A0A445E4B6_ARAHY)

HSP 1 Score: 57.4 bits (137), Expect = 5.780e-9
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 QNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKVC 174
            ++ F  HG+L  VKV+ D  TGKS GYGFV+FTT  +AA     ++   ID +RI+VC
Sbjct:   72 RDAFEQHGELIEVKVICDHVTGKSKGYGFVRFTTETSAATGRKEMHKKIIDGRRIRVC 129          
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: A0A7S2UXK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXK6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 6.160e-9
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    7 MFAVHGDLAHVKVVYDRST-GKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
            +F  HG++AH+K+V DR+   KS+G+GFVK++T   AAAA  A NG+ I  K+IKV
Sbjct:   54 LFEPHGEIAHLKIVMDRAVPNKSLGFGFVKYSTEAQAAAAIEAKNGLQIGTKKIKV 109          
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: A0A0B2RIG3_GLYSO (Glycine-rich RNA-binding protein 2, mitochondrial n=5 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A0B2RIG3_GLYSO)

HSP 1 Score: 57.4 bits (137), Expect = 7.130e-9
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 QNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
            ++ F  HG++  VKV+ D  TGKS GYGFV+F +   AAAA   +NG  +D +RI+V
Sbjct:   75 RDAFGQHGEIIEVKVICDHVTGKSRGYGFVRFVSETTAAAARKEMNGQILDGRRIRV 131          
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: A0A522YMU6_9BACT (RNA-binding protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A522YMU6_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.000e-8
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 QNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
            QN+FA HG++   K+V D+ TG+S G+GFV+  T E A AA  A+NG  +D + I V
Sbjct:   18 QNLFAQHGEVTSAKIVTDKFTGRSKGFGFVEMATAEQANAAIAALNGTELDGRNIVV 74          
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: A0A3M1D5U1_9DELT (RNA-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1D5U1_9DELT)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-8
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   10 FAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
            FA HGD+   KV+ DR +G+S G+GFV    +E AAAAT +++G  +D + I+V
Sbjct:   23 FAAHGDVTEAKVILDRDSGRSRGFGFVTMGNSEQAAAATASLDGQPLDGRTIRV 76          
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: A0A2E8S2G3_9DELT (RNA-binding protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E8S2G3_9DELT)

HSP 1 Score: 55.8 bits (133), Expect = 1.150e-8
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 QNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
            +N FAVHG ++  KV+ DR TG+S G+GFV F    +A+AA  A+NG  +D + I+V
Sbjct:   19 KNHFAVHGAVSEAKVITDRETGRSRGFGFVTFEDAASASAAKEALNGSELDGRTIRV 75          
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: UPI000414CB0C (RNA-binding protein n=1 Tax=Spirochaeta cellobiosiphila TaxID=504483 RepID=UPI000414CB0C)

HSP 1 Score: 55.5 bits (132), Expect = 1.210e-8
Identity = 26/57 (45.61%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    1 QNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
            ++ F+ +GD+A VK++ DR TG+S G+GFV+  T EAAA+A  A+NG  +  + +KV
Sbjct:   19 RDAFSEYGDVASVKIIMDRDTGRSKGFGFVEMETEEAAASAIEALNGAELIGRPLKV 75          
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Match: F8EY47_TRECH (RNP-1 like RNA-binding protein n=4 Tax=Treponema TaxID=157 RepID=F8EY47_TRECH)

HSP 1 Score: 55.5 bits (132), Expect = 1.420e-8
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 QNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDRKRIKV 171
            +N+FA +G++  VK++ DR TG S G+GFV+ +T+  A AA  A NG   D +R+KV
Sbjct:   20 RNLFASYGNVESVKIITDRDTGYSKGFGFVEMSTDAEAQAAIAATNGFEFDGRRLKV 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1069.568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVL9_ECTSI8.760e-2796.49Xel-1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A836CBL9_9STRA7.430e-1052.73RNA-binding domain of Hu antigen C n=1 Tax=Tribone... [more]
A0A445E4B6_ARAHY5.780e-948.28RRM domain-containing protein n=6 Tax=Arachis TaxI... [more]
A0A7S2UXK6_9STRA6.160e-951.79Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A0B2RIG3_GLYSO7.130e-947.37Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
A0A522YMU6_9BACT1.000e-847.37RNA-binding protein n=1 Tax=Chitinophagaceae bacte... [more]
A0A3M1D5U1_9DELT1.120e-846.30RNA-binding protein n=1 Tax=Deltaproteobacteria ba... [more]
A0A2E8S2G3_9DELT1.150e-847.37RNA-binding protein n=1 Tax=Myxococcales bacterium... [more]
UPI000414CB0C1.210e-845.61RNA-binding protein n=1 Tax=Spirochaeta cellobiosi... [more]
F8EY47_TRECH1.420e-845.61RNP-1 like RNA-binding protein n=4 Tax=Treponema T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1069contigH-elongata_contig1069:16678..16851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue4.3e-22
Seed eggNOG ortholog2880.D7FVL9
KEGG koko:K13208
EggNOG free text desc.RNA binding
EggNOG OGsKOG0145@1,KOG0145@2759
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size168
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929599.1365902-UTR-H-elongata_contig1069:16677..166831622929599.1365902-UTR-H-elongata_contig1069:16677..16683Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1069 16678..16683 +
1691679085.9711926-UTR-H-elongata_contig1069:16677..166831691679085.9711926-UTR-H-elongata_contig1069:16677..16683Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1069 16678..16683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929599.1540208-CDS-H-elongata_contig1069:16683..168511622929599.1540208-CDS-H-elongata_contig1069:16683..16851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1069 16684..16851 +
1691679085.991166-CDS-H-elongata_contig1069:16683..168511691679085.991166-CDS-H-elongata_contig1069:16683..16851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1069 16684..16851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1069.568.1prot_H-elongata_contig1069.568.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1069 16684..16851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1069.568.1

>prot_H-elongata_contig1069.568.1 ID=prot_H-elongata_contig1069.568.1|Name=mRNA_H-elongata_contig1069.568.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATVAINGMAIDR
KRIKVC
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mRNA from alignment at H-elongata_contig1069:16678..16851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1069.568.1 ID=mRNA_H-elongata_contig1069.568.1|Name=mRNA_H-elongata_contig1069.568.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig1069:16678..16851+ (Himanthalia elongata Himel1 dioecious)
CAGAACATGTTCGCTGTCCACGGCGATCTGGCGCATGTGAAGGTGGTGTA TGATCGTTCCACCGGCAAGAGCATGGGCTATGGCTTTGTAAAGTTTACCA CTAATGAGGCAGCCGCGGCGGCCACCGTAGCCATCAACGGAATGGCTATT GATCGAAAGCGGATAAAGGTATGC
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Coding sequence (CDS) from alignment at H-elongata_contig1069:16678..16851+

>mRNA_H-elongata_contig1069.568.1 ID=mRNA_H-elongata_contig1069.568.1|Name=mRNA_H-elongata_contig1069.568.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig1069:16678..16851+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGCTGTCCACGGCGATCTGGCGCATGTGAAGGTGGTGTATGATCG
TTCCACCGGCAAGAGCATGGGCTATGGCTTTGTAAAGTTTACCACTAATG
AGGCAGCCGCGGCGGCCACCGTAGCCATCAACGGAATGGCTATTGATCGA
AAGCGGATAAAGGTATGCATGTTCGCTGTCCACGGCGATCTGGCGCATGT
GAAGGTGGTGTATGATCGTTCCACCGGCAAGAGCATGGGCTATGGCTTTG
TAAAGTTTACCACTAATGAGGCAGCCGCGGCGGCCACCGTAGCCATCAAC
GGAATGGCTATTGATCGAAAGCGGATAAAGGTATGC
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