mRNA_H-elongata_contig106858.562.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106858.562.1
Unique NamemRNA_H-elongata_contig106858.562.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106858.562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106858contigH-elongata_contig106858:296..1292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929598.4295068-CDS-H-elongata_contig106858:295..4701622929598.4295068-CDS-H-elongata_contig106858:295..470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106858 296..470 -
1691679085.6171277-CDS-H-elongata_contig106858:295..4701691679085.6171277-CDS-H-elongata_contig106858:295..470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106858 296..470 -
1622929598.4471974-CDS-H-elongata_contig106858:1164..12921622929598.4471974-CDS-H-elongata_contig106858:1164..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106858 1165..1292 -
1691679085.631606-CDS-H-elongata_contig106858:1164..12921691679085.631606-CDS-H-elongata_contig106858:1164..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106858 1165..1292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106858.562.1prot_H-elongata_contig106858.562.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106858 296..1292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106858.562.1

>prot_H-elongata_contig106858.562.1 ID=prot_H-elongata_contig106858.562.1|Name=mRNA_H-elongata_contig106858.562.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
QWYKGAWHGRGTLTYMSGEKYSGHFEMGEQHGSGELDNVDGVRFRGEFRK
GRKHGPGLMASPNGAQFEGWFREDLAHGDGILTWPDGGKFVGKYLAGKVS
*
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mRNA from alignment at H-elongata_contig106858:296..1292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106858.562.1 ID=mRNA_H-elongata_contig106858.562.1|Name=mRNA_H-elongata_contig106858.562.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=997bp|location=Sequence derived from alignment at H-elongata_contig106858:296..1292- (Himanthalia elongata Himel1 dioecious)
CAGTGGTACAAGGGAGCATGGCACGGAAGGGGAACCCTGACCTATATGTC
GGGTGAGAAGTACTCGGGTCATTTCGAAATGGGCGAGCAGCACGGCAGCG
GGGAGTTGGACAACGTGGATGGCGTTAGGTGAAATGGGATTCTACTTTTT
TTTTGTTTTTTTGTTTTTCACCATACTGTATAGCTCTTTTGTGTGACATC
CTTCTTTTCAATTTAATACTCCTTACTGTACGAAGATGCCGCGGCGTAAG
CTGAAGTAGGGCATAGAGAGGTCGGGTCGGGTCGTCTGCTTAACTTGGGT
GCGATATCGAAAATATTTCGAAGTTGAAGCGAAATTAAAGTGCGCTCTCA
AACGAACGTGGATGTTAGAGCTGAAATATAATTTCTACCATCCCCCCTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGAGATGAAATTCTG
AACGTAAATTATTTTTTTTAGTTAGTTTGAACGGGAAATTTCATTTTGAA
AATTCGAATTGCTTTCTTCTTGTTTATTTTTGTAATGTTTTTATGCCGAA
ATTTGAAAATCTGTTGATGAAATTTTGGAATAACCTGAAACTTCACGATA
ATATAGCTTCTAGATTGTTCGCGTTTTTGATGATGTTCAAGACAATAATA
ATAAAAATAAAATGAATACAGTAGCGATGAGCTGATGTTATTTTTAAAAA
AAGTGTTTTAATAAAACACGCCGTCCGCGCCATATAAAATCAAGATTTTT
CCTCTTTTTTTTCTTTTCTCAGGTTTCGGGGAGAATTTAGGAAGGGTAGA
AAACACGGCCCTGGTTTGATGGCAAGCCCAAACGGAGCGCAATTCGAGGG
ATGGTTCCGAGAGGACTTGGCGCACGGAGACGGCATCTTGACGTGGCCTG
ACGGGGGGAAATTCGTGGGTAAATACTTGGCGGGAAAGGTGAGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig106858:296..1292-

>mRNA_H-elongata_contig106858.562.1 ID=mRNA_H-elongata_contig106858.562.1|Name=mRNA_H-elongata_contig106858.562.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig106858:296..1292- (Himanthalia elongata Himel1 dioecious)
CAGTGGTACAAGGGAGCATGGCACGGAAGGGGAACCCTGACCTATATGTC
GGGTGAGAAGTACTCGGGTCATTTCGAAATGGGCGAGCAGCACGGCAGCG
GGGAGTTGGACAACGTGGATGGCGTTAGCAGTGGTACAAGGGAGCATGGC
ACGGAAGGGGAACCCTGACCTATATGTCGGGTGAGAAGTACTCGGGTCAT
TTCGAAATGGGCGAGCAGCACGGCAGCGGGGAGTTGGACAACGTGGATGG
CGTTAGGTTTCGGGGAGAATTTAGGAAGGGTAGAAAACACGGCCCTGGTT
TGATGGCAAGCCCAAACGGAGCGCAATTCGAGGGATGGTTCCGAGAGGAC
TTGGCGCACGGAGACGGCATCTTGACGTGGCCTGACGGGGGGAAATTCGT
GGGTAAATACTTGGCGGGAAAGGTGAGCTGAGTTTCGGGGAGAATTTAGG
AAGGGTAGAAAACACGGCCCTGGTTTGATGGCAAGCCCAAACGGAGCGCA
ATTCGAGGGATGGTTCCGAGAGGACTTGGCGCACGGAGACGGCATCTTGA
CGTGGCCTGACGGGGGGAAATTCGTGGGTAAATACTTGGCGGGAAAGGTG
AGCTGA
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