mRNA_H-elongata_contig10684.559.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10684.559.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI) HSP 1 Score: 232 bits (592), Expect = 5.570e-68 Identity = 110/146 (75.34%), Postives = 129/146 (88.36%), Query Frame = 1
Query: 1 LVNAG-GSSSLEVTARVINPTPLKLQSFDGLVDHTCIEDSEKKGGLLSKMKHAITSSYTPPEDINGVVALMYIDQWVEAGLKLEGGKDGLGFPFMYLLLTGMMGIKVLPEDNSFNWGAVLLRMLPWEQTQKKDLVMSVLKAFAYNP 435
L++AG GS++ EVTARV + PLKLQSFDGLVDH+C+ED EKKGGL SKMKH I++SY+PP D +G VAL+ +DQW+E GLKLE GK GLGFPFMYLLLTG MG+KVLPEDN+FNWGAVLLR+LPWEQTQ+KDLVMSVL+A AYNP
Sbjct: 2394 LIHAGAGSTTGEVTARVNSRPPLKLQSFDGLVDHSCMEDQEKKGGLFSKMKHVISTSYSPPVDASGAVALLALDQWLEDGLKLEEGKYGLGFPFMYLLLTGSMGLKVLPEDNTFNWGAVLLRLLPWEQTQRKDLVMSVLRALAYNP 2539
BLAST of mRNA_H-elongata_contig10684.559.1 vs. uniprot
Match: A0A835Z7Z7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z7_9STRA) HSP 1 Score: 158 bits (400), Expect = 3.920e-42 Identity = 73/143 (51.05%), Postives = 101/143 (70.63%), Query Frame = 1
Query: 31 EVTARVINPTPLKLQSFDGLVDHTCIEDSEKKGGLLSKMKHAITSSYTPPEDINGVVALMYIDQWVEAG--------LKLEGGKDGLGFPFMYLLLTGMMGIKVLPEDNSFNWGAVLLRMLPWEQTQKKDLVMSVLKAFAYNP 435
EVT V P ++SFDG +D++C+E++EKK GLLSK+K AIT Y PP D+ GV A+ ++ W++A L+ G+ LGFPF+Y L+TG +GI+VLPED++FNWGA+LLR+LPW +KDL+MS+LKA A NP
Sbjct: 3123 EVTVSVDMPLLPPVKSFDGFIDNSCLEEAEKKAGLLSKVKVAITGGYIPPMDVAGVTAIQALNTWLQAEDIASSGGQFDLDEGRHHLGFPFLYCLMTGTIGIRVLPEDSAFNWGAILLRLLPWNVVTRKDLLMSILKALAANP 3265
BLAST of mRNA_H-elongata_contig10684.559.1 vs. uniprot
Match: A0A7S4LBJ5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LBJ5_9EUGL) HSP 1 Score: 97.1 bits (240), Expect = 2.570e-22 Identity = 49/128 (38.28%), Postives = 79/128 (61.72%), Query Frame = 1
Query: 61 PLKLQSFDGLVDHTCIEDSEKKGGLLSK--MKHAITSSYT--PPEDINGVVALMYIDQWVEAGLKLEGGKDGLGFPFMYLLLTGMMGIKVLPEDNSFNWGAVLLRMLPWEQTQKKDLVMSVLKAFAYN 432
P+ FD L+D TC+E + SK ++ S+Y PE+I G A+ ++++ V GLK++GGK+ LGF F+Y LLT + +K+ ED S+NWG +LLR+LP ++T++ +MS+L+ N
Sbjct: 52 PMVWYCFDSLIDRTCVEATPD---FWSKHFTQYFQQSAYARPSPEEIEGQPAIDFLEKCVAGGLKIKGGKENLGFLFLYELLTESLKLKITDEDISYNWGCILLRLLPAKETRETGHIMSILRMLCVN 176
BLAST of mRNA_H-elongata_contig10684.559.1 vs. uniprot
Match: A0A2R5GI29_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GI29_9STRA) HSP 1 Score: 100 bits (249), Expect = 8.410e-22 Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 1
Query: 37 TARVINPTPLKLQSFDGLVDHTCIEDSEKKGGLLSKMKHAITSSYTPP--EDINGVVALMYIDQWVEAG-LKLEGGKDGLGFPFMYLLLTGMMGIKVLPEDNSFNWGAVLLRMLPWEQTQKKDLVMSVLKAFAYN 432
+ +V++P + FD + D T IE S+ S +K SYT P ED++GV A+ + +W G ++L GGKD LGF F+Y L+T +KVLP D+ FNW A+LLR++P T+ +D++ S+L+ A N
Sbjct: 2510 SVQVLSPEAPTMYHFDAVCDLTSIEASD------SAIKKMTALSYTRPKDEDLSGVAAVKRLSKWSRPGRMRLHGGKDSLGFLFLYELMTESAPLKVLPGDSPFNWAAILLRLMPARDTKGRDVLNSILRILAEN 2638
BLAST of mRNA_H-elongata_contig10684.559.1 vs. uniprot
Match: A0A7S1N5G9_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N5G9_9EUGL) HSP 1 Score: 97.8 bits (242), Expect = 1.440e-21 Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = 1
Query: 67 KLQSFDGLVDHTCIEDSEKKGGLLSKMKHAITSSYTPPEDINGVVALMYIDQWVEAGLKLEGGKDGLGFPFMYLLLTGMMGIKVLPEDNSFNWGAVLLRMLPWEQTQKKDLVMSVLKAFAYN 432
+L FD + D TC E K+ + + S PPE + GV + ++D+ G L+GG D + F F+Y LLTG + + + P D+S+NWGA+L+R+LP EQTQ K L+MS+L+ N
Sbjct: 129 RLAMFDSVKDTTCFE---KRLDFWGQHFSMVAYSRPPPECLQGVPCIQFVDRLFLNGFSLDGGGDNISFFFLYELLTGSLKMCMGPGDSSYNWGAILIRLLPPEQTQTKGLLMSILRCLMLN 247
BLAST of mRNA_H-elongata_contig10684.559.1 vs. uniprot
Match: A0A2R5FYY4_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYY4_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.370e-20 Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 1
Query: 55 PTPLKLQSFDGLVDHTCIEDSEKKGGLLSKMKHAITS----SYTPPEDINGVVALMYIDQWVEAGLKLEGGKDGLGFPFMYLLLTGMMGIKVLPEDNSFNWGAVLLRMLPWEQTQKKDLVMSVLKAFAYNP 435
P P FD + D T +ED K K A +S SY P D++GV L + G+ + GGK GFPF+Y L+TG + ++VL +DN FNW +VLL M+P + +K + SVL+ A NP
Sbjct: 2246 PRPRPSVCFDQVRDDTALED-RKNASSWRKTLRAFSSLKPMSYDRPTDLSGVEGLRLFHDMINRGVSIRGGKTSKGFPFLYELMTGTLSVRVLDDDNCFNWASVLLHMMPPHKFKKTQTMTSVLRILANNP 2375
BLAST of mRNA_H-elongata_contig10684.559.1 vs. uniprot
Match: A0A7S1NNJ3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NNJ3_9EUGL) HSP 1 Score: 94.0 bits (232), Expect = 1.550e-19 Identity = 49/119 (41.18%), Postives = 71/119 (59.66%), Query Frame = 1
Query: 76 SFDGLVDHTCIEDSEKKGGLLSKMKHAITSSYTPPEDINGVVALMYIDQWVEAGLKLEGGKDGLGFPFMYLLLTGMMGIKVLPEDNSFNWGAVLLRMLPWEQTQKKDLVMSVLKAFAYN 432
SFDG+VD +CIE L +H SYT P G A+ + + +E GL L+GGKD LGF F+Y LLTG + +++LP D+ +N+G +L R+LP ++ K +MSVL+ N
Sbjct: 337 SFDGVVDKSCIETK-----LDFFQQHFSMVSYTRPTQSQGEAAVTLLGRVMEHGLNLKGGKDNLGFVFLYELLTGTLKLQLLPFDSPYNYGCLLTRLLPAKEATDKSHLMSVLRILIAN 450
BLAST of mRNA_H-elongata_contig10684.559.1 vs. uniprot
Match: A0A7S1T004_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T004_9CHLO) HSP 1 Score: 90.1 bits (222), Expect = 3.470e-18 Identity = 51/145 (35.17%), Postives = 79/145 (54.48%), Query Frame = 1
Query: 10 AGGSSSLEVTARVINPTPLKLQSFDGLVDHTCIEDSEKKGGLLSKMKHAITSSYTPPEDINGVVALMYIDQWVEAGLKLEGGKDGL---GFPFMYLLLTGMMGIKVLPEDNSFNWGAVLLRMLPWEQTQKKDLVMSVLKAFAYNP 435
AGG+S +V P + FD LVD +C+E G LS +K Y PED +G A+ ++++ + GL L G GL GF Y L TG +GI++LP D++F ++L+RM+P + + + L+MS+L+ NP
Sbjct: 1122 AGGASP---DFKVEQPRVAQCSGFDRLVDRSCVE------GALS-LKSLALPGYRRPEDAHGSNAVKFLNKLLSRGLSLTGVTSGLNTAGFTLCYELFTGSLGIRILPNDSTFQMASLLMRMMPTGEVRSRGLLMSILRVMEANP 1256
BLAST of mRNA_H-elongata_contig10684.559.1 vs. uniprot
Match: A0A7S0X4L7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X4L7_9CHLO) HSP 1 Score: 87.8 bits (216), Expect = 2.140e-17 Identity = 47/133 (35.34%), Postives = 77/133 (57.89%), Query Frame = 1
Query: 46 VINPTPLKLQSFDGLVDHTCIEDSEKKGGLLSKMKHAITSSYTPPED--INGVVALMYIDQWVEAG-LKLEGGKDGLGFPFMYLLLTGMMGIKVLPEDNSFNWGAVLLRMLPWEQTQKKDLVMSVLKAFAYNP 435
++ P +FD + D +C+E+ G L ++ +T S+ ED I GV L I +W+++G L L+G GFP ++ LLTG +G++VLP D+ WG+ LLR +P EQ+ K+ +MS L+ + +P
Sbjct: 754 LVYPEAAAHSAFDAVEDRSCLEEGVMGEGPLGRLA-GLTHSFPLYEDREITGVGGLQKIGEWIDSGSLALDGSH---GFPLLFELLTGSVGLRVLPGDDPHRWGSALLRFVPLEQSLKRGTLMSTLRLLSSSP 882
BLAST of mRNA_H-elongata_contig10684.559.1 vs. uniprot
Match: A0A7S0X4Q1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X4Q1_9CHLO) HSP 1 Score: 87.8 bits (216), Expect = 2.200e-17 Identity = 47/133 (35.34%), Postives = 77/133 (57.89%), Query Frame = 1
Query: 46 VINPTPLKLQSFDGLVDHTCIEDSEKKGGLLSKMKHAITSSYTPPED--INGVVALMYIDQWVEAG-LKLEGGKDGLGFPFMYLLLTGMMGIKVLPEDNSFNWGAVLLRMLPWEQTQKKDLVMSVLKAFAYNP 435
++ P +FD + D +C+E+ G L ++ +T S+ ED I GV L I +W+++G L L+G GFP ++ LLTG +G++VLP D+ WG+ LLR +P EQ+ K+ +MS L+ + +P
Sbjct: 754 LVYPEAAAHSAFDAVEDRSCLEEGVMGEGPLGRLA-GLTHSFPLYEDREITGVGGLQKIGEWIDSGSLALDGSH---GFPLLFELLTGSVGLRVLPGDDPHRWGSALLRFVPLEQSLKRGTLMSTLRLLSSSP 882 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10684.559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10684.559.1 >prot_H-elongata_contig10684.559.1 ID=prot_H-elongata_contig10684.559.1|Name=mRNA_H-elongata_contig10684.559.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp LVNAGGSSSLEVTARVINPTPLKLQSFDGLVDHTCIEDSEKKGGLLSKMKback to top mRNA from alignment at H-elongata_contig10684:1986..3002+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10684.559.1 ID=mRNA_H-elongata_contig10684.559.1|Name=mRNA_H-elongata_contig10684.559.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1017bp|location=Sequence derived from alignment at H-elongata_contig10684:1986..3002+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10684:1986..3002+ >mRNA_H-elongata_contig10684.559.1 ID=mRNA_H-elongata_contig10684.559.1|Name=mRNA_H-elongata_contig10684.559.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig10684:1986..3002+ (Himanthalia elongata Himel1 dioecious)back to top |