mRNA_H-elongata_contig106779.556.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106779.556.1
Unique NamemRNA_H-elongata_contig106779.556.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig106779.556.1 vs. uniprot
Match: D7FY79_ECTSI (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY79_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.390e-29
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1 
Query:    1 ARLTQDFAHCVGIELLDPLHSAAQRVTGLYNSKFRRRLDSTRPQNAAMYLGSFLYHDWSDGDVVFANSTCFPDQLMRRLANQ 246
            ARLTQDF HCVGIE+L PLH+AAQ VT  +N+  +R LD   PQNA+++ GSFL +DWSDGD VFANSTCFP+ LM  LA Q
Sbjct:  128 ARLTQDFTHCVGIEILQPLHTAAQLVTNRFNAHVKRLLDRRCPQNASVFAGSFLEYDWSDGDCVFANSTCFPEDLMDALARQ 209
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BLAST of mRNA_H-elongata_contig106779.556.1 vs. uniprot
Match: A0A7S2XW22_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW22_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.570e-24
Identity = 48/82 (58.54%), Postives = 64/82 (78.05%), Query Frame = 1 
Query:    1 ARLTQDFAHCVGIELLDPLHSAAQRVTGLYNSKFRRRLDSTRPQNAAMYLGSFLY-HDWSDGDVVFANSTCFPDQLMRRLAN 243
            ARLTQDF+ CVGIE+L+ LH AA+ V   YN + R  L+ST+PQ+A ++ GSF+  HDWSDGD+VFANSTC+ D LM+ L++
Sbjct:  150 ARLTQDFSTCVGIEILEGLHKAAESVVERYNREIRHYLNSTKPQDAEVHHGSFIGDHDWSDGDIVFANSTCYDDDLMQSLSD 231
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BLAST of mRNA_H-elongata_contig106779.556.1 vs. uniprot
Match: A0A7S1TW39_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TW39_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.970e-22
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 ARLTQDFAHCVGIELLDPLHSAAQRVTGLYNSKFRRRLDSTRPQNAAMYLGSFLYHDWSDGDVVFANSTCFPDQLMRRLA 240
            AR   DF  C G+E+L+ L  AA  +T  YNS +R  L + +PQ   ++ GSFL +DWSDGDV+FANSTCF D LMR++A
Sbjct:  146 ARFACDFGRCTGVEILEGLSDAAHAITRKYNSTYREYLSAAQPQEVTVHQGSFLDYDWSDGDVIFANSTCFDDDLMRKIA 225
[Close]
BLAST of mRNA_H-elongata_contig106779.556.1 vs. uniprot
Match: A0A7S4DAD9_HETAK (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAD9_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 2.490e-22
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 ARLTQDFAHCVGIELLDPLHSAAQRVTGLYNSKFRRRLDSTRPQNAAMYLGSFLYHDWSDGDVVFANSTCFPDQLMRRLA 240
            AR TQDF  C GIE+L  LH AA+ V   YN+ FR  L+ST  Q AA+  GSFL +DWSDGD+VFANSTCF D LM  ++
Sbjct:  161 ARFTQDFDTCKGIEILSGLHKAAEGVVDKYNAGFRELLNSTASQEAAVQRGSFLDYDWSDGDLVFANSTCFDDDLMNAMS 240
[Close]
BLAST of mRNA_H-elongata_contig106779.556.1 vs. uniprot
Match: A0A835Z0J1_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J1_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 5.350e-21
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:    1 ARLTQDFAHCVGIELLDPLHSAAQRVTGLYNSKFRRRLDSTRPQNAAMYLGSFLYHDWSDGDVVFANSTCFPDQLMRRLA 240
            ARLTQDF  C G+E+L+ LH AA  V   + +  RR L S++ Q   M+LGS +  DWSDGDVVFANSTCF D LM  +A
Sbjct:  140 ARLTQDFERCEGVEILEGLHRAATEVAEAFEACVRRSLCSSQAQGLTMHLGSLIDFDWSDGDVVFANSTCFDDALMASIA 219
[Close]
BLAST of mRNA_H-elongata_contig106779.556.1 vs. uniprot
Match: A0A7S2HTB0_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HTB0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.420e-19
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:    1 ARLTQDFAHCVGIELLDPLHSAAQRVTGLYNSKFRRRLDSTRPQNAAMYLGSFLYHDWSDGDVVFANSTCFPDQLMRRLA 240
            AR+  DF  C+GIE+L  LH AA +V   YN  +R+ L + R Q+  +Y GS L  DW+DGDVVFANSTCF D LM  L+
Sbjct:  171 ARMLCDFDRCMGIEILSNLHDAAIKVVDRYNQYYRQYLSTKRSQHVTVYQGSVLTFDWADGDVVFANSTCFDDNLMDGLS 250
[Close]
BLAST of mRNA_H-elongata_contig106779.556.1 vs. uniprot
Match: A0A7R9U3G4_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3G4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.250e-19
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:    1 ARLTQDFAHCVGIELLDPLHSAAQRVTGLYNSKFRRRLDSTRPQNAAMYLGSFLYHDWSDGDVVFANSTCFPDQLMRRLANQ 246
            ARLT DF  C GIE+L+ L +AA  +T  ++S +R  L +++PQ  A++  SFL  DWSDGDVVFANSTC+ + LM +L  Q
Sbjct:  171 ARLTCDFGQCTGIEILEGLSNAAAEITKQFSSSYREYLCASQPQEVAVHQCSFLDFDWSDGDVVFANSTCYDEDLMLKLTAQ 252
[Close]
BLAST of mRNA_H-elongata_contig106779.556.1 vs. uniprot
Match: F0YKW3_AURAN (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKW3_AURAN)

HSP 1 Score: 87.8 bits (216), Expect = 1.750e-18
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:    1 ARLTQDFAHCVGIELLDPLHSAAQRVTGLYNSKFRRRLDSTRPQNAAMYLGSFLYHDWSDGDVVFANSTCFPDQLMRRLANQ 246
            ARL  DF  C G+E+L+ LH AA  V   +  KF   LD+  PQ   +   SFL  DWSDGDVVFANSTCF D L+  LA Q
Sbjct:  140 ARLLCDFEICCGVEILESLHYAADSVVRSFKLKFLHLLDTNSPQEVRLKCASFLSTDWSDGDVVFANSTCFEDDLVANLAEQ 221
[Close]
BLAST of mRNA_H-elongata_contig106779.556.1 vs. uniprot
Match: F0YGS0_AURAN (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGS0_AURAN)

HSP 1 Score: 79.7 bits (195), Expect = 7.960e-16
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:    4 RLTQDFAHCVGIELLDPLHSAAQRVTGLYNSKFRRRLDSTRPQNAAMYLGSFLYHDWSDGDVVFANSTCFPDQLMRRLANQ 246
            +L +DF  C G+E+L  LH+AA  V   ++ K    LD    Q   +   SFL+ DWSDGDVVFANSTCF D+LM  +  Q
Sbjct:  152 QLLRDFDCCCGVEVLAGLHTAAHSVASEFSEKIAPMLDLNTSQRVYLQCASFLHVDWSDGDVVFANSTCFGDELMLAMTRQ 232
[Close]
BLAST of mRNA_H-elongata_contig106779.556.1 vs. uniprot
Match: A0A7S4ED92_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ED92_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12
Identity = 38/82 (46.34%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:    1 ARLTQDFAHCVGIELLDPLHSAAQRVTGLYNSKFRRRLDSTRPQNAAMYLGSFLYHDWSDGDVVFANSTCFPDQLMRRLANQ 246
            ARL  DF  C GIE+L+ L+ AAQ +   +       LD+   +   +   S L  DWSDGDVVFANSTCF D LM  +A Q
Sbjct:  151 ARLLHDFDVCKGIEVLENLNGAAQIICKRFEVLASDVLDARTSKKIEVQCNSMLDVDWSDGDVVFANSTCFEDDLMGSMARQ 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106779.556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY79_ECTSI1.390e-2965.85Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S2XW22_9STRA2.570e-2458.54Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S1TW39_9STRA1.970e-2252.50Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S4DAD9_HETAK2.490e-2258.75Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A835Z0J1_9STRA5.350e-2155.00Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S2HTB0_9STRA3.420e-1952.50Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7R9U3G4_9STRA4.250e-1951.22Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
F0YKW3_AURAN1.750e-1852.44Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
F0YGS0_AURAN7.960e-1646.91Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S4ED92_9STRA1.010e-1246.34Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106779contigH-elongata_contig106779:337..1762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue2.3e-24
Seed eggNOG ortholog2880.D7FY79
EggNOG free text desc.Histone methylation protein DOT1
EggNOG OGs2BR00@1,2S1KF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929597.8859975-CDS-H-elongata_contig106779:336..4501622929597.8859975-CDS-H-elongata_contig106779:336..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106779 337..450 -
1691679085.3110776-CDS-H-elongata_contig106779:336..4501691679085.3110776-CDS-H-elongata_contig106779:336..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106779 337..450 -
1622929597.9014633-CDS-H-elongata_contig106779:1630..17621622929597.9014633-CDS-H-elongata_contig106779:1630..1762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106779 1631..1762 -
1691679085.340766-CDS-H-elongata_contig106779:1630..17621691679085.340766-CDS-H-elongata_contig106779:1630..1762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106779 1631..1762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106779.556.1prot_H-elongata_contig106779.556.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106779 337..1762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106779.556.1

>prot_H-elongata_contig106779.556.1 ID=prot_H-elongata_contig106779.556.1|Name=mRNA_H-elongata_contig106779.556.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
ARLTQDFAHCVGIELLDPLHSAAQRVTGLYNSKFRRRLDSTRPQNAAMYL
GSFLYHDWSDGDVVFANSTCFPDQLMRRLANQ
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mRNA from alignment at H-elongata_contig106779:337..1762-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106779.556.1 ID=mRNA_H-elongata_contig106779.556.1|Name=mRNA_H-elongata_contig106779.556.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1426bp|location=Sequence derived from alignment at H-elongata_contig106779:337..1762- (Himanthalia elongata Himel1 dioecious)
GCACGCCTCACTCAAGACTTTGCCCACTGCGTGGGCATCGAGCTGCTGGA
TCCCCTACACTCCGCGGCGCAGCGCGTTACAGGTCTCTACAACTCCAAGT
TCCGGCGTCGCCTGGACAGCACGCGGCCCCAGGTACGTGTGTCTAGCCGA
TAACGCAACGCCTTCAAAGTGGTTTGGACTATTAGTATTAATATTAATAG
TGCCAAGAGCGCAGAGCTATCGGTAGTATTTATAGTGGCTGGAGCCGTCC
GGCGCCTTTTTGTTTGAGGGTGCTATAGTCGTGCCTTGGAGACCCGTCGT
CTTCGCCACCCGGTAATTGTTTATAGCTTCATCCATTGATTGATTCATTA
GCAGGTTGAGTGATTGATTATTGACTATGTTTGTCGGATGATGCACGACA
AAAATGTGTGTATTAAAGTTTAGAGTTACCAGACAGAGGAAGCGTGGCGA
GGACAGCTAAAAGCCATCCTCCCCCCCATCCTCTCAGGCCTGCGCGTGAG
GATCATGTGTTTTGGATGGAGTTACGGCAAGGGTACATGTAGGCGGGACG
AGTTTGGTGGCCGGGCGAGGCACGGATGGGGTCGAGCTACATGACAAGAC
ATCACCCACGCATAGCACGACCCGCTCTACCATTACCATCATAGTCTACT
GGTCTTTGGAGCTATTAATCTATTAATATAATTACTCGTAGAGGGTACAC
ACAGTGCTCGTGTGTTTTTTTCTTTTCCCGAGTGTCGTGGTCGTGGTCGT
GTGCCGGAGTTTTCTCCATACTGGGAAGAATTTCACTGTCACTGTTTTTT
GTTCACCTATGAGGGGGTTCTTTTTTTTCCTTCCGTAGACTTGCCTTGAT
CCTTGACTCTCTTTTTTCCCATTCGCGATTCACGCCTGTTTCGGTGCAAC
TCCTTCATTTTCATTTTTTTTAAGCTCCTTTGGCCCCTACCCCTGTATCC
CGGCATTTTTAGTCTTATCCCGGTTTGCAACCTCTTACCTTGTCCATGTA
CCCCATTTGTACCTTTCTGTACTTACCTTCTTTGAGCCCTGTCCGTGTAC
CTTTTTTAAGACGTTACCCCGTTTTCTCGATCAATCAATCAATCAATGGT
ATCTTATCCGTTTACTTACCCCTCCTTAGTACCTTGCCTCTCTCTCTAAC
CCTTTGGTAACCCCCTACCCCTCCTTTTTCCCCTGACCTCTTTCCCCCTT
TCCCCTATTACAGTACCTTACATCTTTATCTATTTATCCCCTACTGGAAT
GTACCTTAATCCGTGATAACACCCCCTCCACCCTTTTGTACCTCCTATCT
TGGCTCCCCAAGAATGCCGCCATGTATCTTGGCTCGTTCCTGTATCACGA
CTGGTCAGACGGGGACGTCGTCTTCGCCAACAGCACGTGCTTCCCTGACC
AACTCATGCGACGGCTGGCCAATCAG
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Coding sequence (CDS) from alignment at H-elongata_contig106779:337..1762-

>mRNA_H-elongata_contig106779.556.1 ID=mRNA_H-elongata_contig106779.556.1|Name=mRNA_H-elongata_contig106779.556.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig106779:337..1762- (Himanthalia elongata Himel1 dioecious)
GCACGCCTCACTCAAGACTTTGCCCACTGCGTGGGCATCGAGCTGCTGGA
TCCCCTACACTCCGCGGCGCAGCGCGTTACAGGTCTCTACAACTCCAAGT
TCCGGCGTCGCCTGGACAGCACGCGGCCCCAGGCACGCCTCACTCAAGAC
TTTGCCCACTGCGTGGGCATCGAGCTGCTGGATCCCCTACACTCCGCGGC
GCAGCGCGTTACAGGTCTCTACAACTCCAAGTTCCGGCGTCGCCTGGACA
GCACGCGGCCCCAGAATGCCGCCATGTATCTTGGCTCGTTCCTGTATCAC
GACTGGTCAGACGGGGACGTCGTCTTCGCCAACAGCACGTGCTTCCCTGA
CCAACTCATGCGACGGCTGGCCAATCAGAATGCCGCCATGTATCTTGGCT
CGTTCCTGTATCACGACTGGTCAGACGGGGACGTCGTCTTCGCCAACAGC
ACGTGCTTCCCTGACCAACTCATGCGACGGCTGGCCAATCAG
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