mRNA_H-elongata_contig106610.543.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106610.543.1
Unique NamemRNA_H-elongata_contig106610.543.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: D7G058_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G058_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 3.770e-56
Identity = 91/120 (75.83%), Postives = 102/120 (85.00%), Query Frame = 1
Query:    1 VKNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDG-SRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
            VKNEGV  LYAGLSAALARQASYTTLRLGLYD ++R V+D  +     +  +L RI +GA+SGGMASFCSCPIEVCLVRMQADGKLPK++QRGYRGVF ALY+IARDEG L YWRGGGTT
Sbjct:   83 VKNEGVTALYAGLSAALARQASYTTLRLGLYDLLRRLVLDSRTSDMNGVQLLLLRILIGAVSGGMASFCSCPIEVCLVRMQADGKLPKDQQRGYRGVFHALYRIARDEGALAYWRGGGTT 202          
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: A0A835ZCT1_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT1_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.180e-39
Identity = 72/125 (57.60%), Postives = 84/125 (67.20%), Query Frame = 1
Query:    1 VKNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVID------GSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
            V  EG M LY GLSA L RQA+YTTLRLGLYD  KR  ++      G   +GA      R  VGA+SG  ASF SCP+EVCLVRMQ DGKLPK  +R Y+ +FDAL +I R+EG+ TYW G GTT
Sbjct:  130 VHEEGAMSLYGGLSAGLLRQATYTTLRLGLYDLGKRLALELIELVTGEPARGAAGGAAMRFVVGALSGAAASFLSCPVEVCLVRMQGDGKLPKAARRNYKSIFDALIRIGREEGLTTYWTGAGTT 254          
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: A0A835Z4J2_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J2_9STRA)

HSP 1 Score: 138 bits (348), Expect = 6.690e-38
Identity = 68/118 (57.63%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    4 KNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
            + +GV GLYAGLSAA+ RQA YTT RLGLYD +K A+       G    VL R+  G  +GG+A+F +CPIEVCLVRMQADG+LP  ++RGY  VF+AL ++A++EGVLTYWRG   T
Sbjct:   59 RTQGVKGLYAGLSAAITRQAVYTTARLGLYDIIKAAIAP----PGTEVTVLHRLTTGLAAGGIAAFLTCPIEVCLVRMQADGRLPPAERRGYTNVFNALGRVAKEEGVLTYWRGASPT 172          
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: W7TLF9_9STRA (Mitochondrial 2-oxoglutarate malate carrier protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLF9_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.730e-36
Identity = 68/119 (57.14%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    1 VKNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
            +K EG  GLY+GLSAA+ARQ SYTT+RLG +D +K  +      + AL   L+ +  GA     ASF +CP+EVCLVRMQADGKLP E++RGY+ V DAL ++AR+EGVLTYWRG G T
Sbjct:   71 IKREGFAGLYSGLSAAIARQMSYTTMRLGFFDEIKAFLAQRQVQENALTRSLSAMTAGAC----ASFLACPVEVCLVRMQADGKLPPEQRRGYKHVGDALLRVAREEGVLTYWRGAGPT 185          
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: A0A4D9CTP4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTP4_9STRA)

HSP 1 Score: 134 bits (336), Expect = 5.920e-36
Identity = 67/119 (56.30%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    1 VKNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
            +K EG  GLY+GLSAA+ARQ SYTT+RLG +D +K  +      + AL   ++ +  GA     ASF +CP+EVCLVRMQADGKLP E++RGY+ V DAL ++AR+EGVLTYWRG G T
Sbjct:   75 IKREGFAGLYSGLSAAIARQMSYTTMRLGFFDEIKAFLAQRQVQENALTRSMSAMTAGAC----ASFLACPVEVCLVRMQADGKLPPEQRRGYKHVGDALLRVAREEGVLTYWRGAGPT 189          
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: A0A7S4GIE6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GIE6_9EUGL)

HSP 1 Score: 125 bits (314), Expect = 3.930e-33
Identity = 65/116 (56.03%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    1 VKNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSC-PIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRG 345
            VK EG+ GLY+GLSAA+ RQ +YTT RLGLY  ++  +    R    +H V A +A GA     A+ C C P+EVCLVRMQADG+LP  +QRGY+ V DAL ++AR+EGVLTYWRG
Sbjct:   28 VKKEGIPGLYSGLSAAILRQITYTTTRLGLYGTIRDVITPVDRPATVVHRVGAAVAAGA-----AAACVCNPVEVCLVRMQADGRLPPAEQRGYKHVGDALMRVAREEGVLTYWRG 138          
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: A0A7S1JD16_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JD16_9EUGL)

HSP 1 Score: 124 bits (311), Expect = 1.930e-32
Identity = 62/115 (53.91%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 VKNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRG 345
            +KNEG  GLY+GLSAA+ RQ +YTT RLGLY  ++  ++   +       VLA +  GAI+    S C+ PIEVCLVRMQ+DG+LPK +QR Y+ +FDAL ++AR+EG+LTYWRG
Sbjct:   54 LKNEGAKGLYSGLSAAMMRQVTYTTARLGLYGSLRDLIVKPGQQATLGQRVLAGVGAGAIAS---SVCN-PIEVCLVRMQSDGRLPKAEQRNYKHIFDALGRVAREEGILTYWRG 164          
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: D8LMW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW0_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 3.360e-32
Identity = 61/115 (53.04%), Postives = 85/115 (73.91%), Query Frame = 1
Query:   13 GVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
            G+ G+YAGLSAA+ RQA YTTLR+GLYD+++   +     +  ++ VL R AVG  +GG+ASF  CPIEVC+VRMQ+D +LP+  + GY+ + DAL++IA++EGV TYWRG   T
Sbjct:   64 GLRGMYAGLSAAVTRQAVYTTLRVGLYDWIRDHAVHKFVKQEDIN-VLHRAAVGLTAGGIASFMCCPIEVCMVRMQSDARLPQADRLGYKHIGDALFRIAKEEGVRTYWRGATPT 177          
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: A0A0G4GW21_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GW21_VITBC)

HSP 1 Score: 122 bits (305), Expect = 1.980e-31
Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    4 KNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
            K EG+ GLY+GLSA + RQA+YTTLR GLY  ++    D     GA   V  ++  G  SG +AS   CP+EV LVRMQADG+LP  ++RGY  VF+ALY+IA++EG+LT WRG   T
Sbjct:   66 KTEGLWGLYSGLSAGITRQATYTTLRGGLYQILR----DRYTVPGANPTVAVKLGCGLTSGAIASVVCCPVEVSLVRMQADGRLPVAERRGYTNVFNALYRIAKEEGILTCWRGSTPT 179          
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: A0A7S4LEC9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LEC9_9EUGL)

HSP 1 Score: 120 bits (300), Expect = 4.740e-31
Identity = 60/116 (51.72%), Postives = 80/116 (68.97%), Query Frame = 1
Query:   10 EGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
            EGV G Y+GLSAA+ RQ +YTT RLGLY  ++ A+   +R    +H    R+  G  +GG+A+F   P+EVCLVRMQADG+LP  +QRGY+ V DAL +IA +EG +TY+RG   T
Sbjct:   31 EGVRGFYSGLSAAILRQITYTTARLGLYGTIRDAITPSNRPATIVH----RVGAGVGAGGLAAFMCNPVEVCLVRMQADGRLPAAEQRGYKHVGDALVRIASEEGFVTYYRGSAPT 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G058_ECTSI3.770e-5675.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCT1_9STRA1.180e-3957.60Mitochondrial carrier domain-containing protein n=... [more]
A0A835Z4J2_9STRA6.690e-3857.63Mitochondrial carrier domain-containing protein n=... [more]
W7TLF9_9STRA2.730e-3657.14Mitochondrial 2-oxoglutarate malate carrier protei... [more]
A0A4D9CTP4_9STRA5.920e-3656.30Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S4GIE6_9EUGL3.930e-3356.03Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1JD16_9EUGL1.930e-3253.91Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
D8LMW0_ECTSI3.360e-3253.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4GW21_VITBC1.980e-3152.54Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S4LEC9_9EUGL4.740e-3151.72Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106610contigH-elongata_contig106610:217..1321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.5
Seed ortholog evalue2.8e-41
Seed eggNOG ortholog2880.D7G058
KEGG koko:K15104
KEGG TC2.A.29.2.1,2.A.29.2.9
EggNOG free text desc.thiosulfate transmembrane transporter activity
EggNOG OGsKOG0759@1,KOG0759@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons3
Model size357
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106610.543.1prot_H-elongata_contig106610.543.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106610 217..1303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929596.4625819-CDS-H-elongata_contig106610:216..3331622929596.4625819-CDS-H-elongata_contig106610:216..333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106610 217..333 -
1691679084.4412775-CDS-H-elongata_contig106610:216..3331691679084.4412775-CDS-H-elongata_contig106610:216..333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106610 217..333 -
1622929596.47455-CDS-H-elongata_contig106610:637..7561622929596.47455-CDS-H-elongata_contig106610:637..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106610 638..756 -
1691679084.4546208-CDS-H-elongata_contig106610:637..7561691679084.4546208-CDS-H-elongata_contig106610:637..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106610 638..756 -
1622929596.4851644-CDS-H-elongata_contig106610:1200..13031622929596.4851644-CDS-H-elongata_contig106610:1200..1303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106610 1201..1303 -
1691679084.4758844-CDS-H-elongata_contig106610:1200..13031691679084.4758844-CDS-H-elongata_contig106610:1200..1303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106610 1201..1303 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929596.499209-UTR-H-elongata_contig106610:1303..13211622929596.499209-UTR-H-elongata_contig106610:1303..1321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106610 1304..1321 -
1691679084.4912963-UTR-H-elongata_contig106610:1303..13211691679084.4912963-UTR-H-elongata_contig106610:1303..1321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106610 1304..1321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106610.543.1

>prot_H-elongata_contig106610.543.1 ID=prot_H-elongata_contig106610.543.1|Name=mRNA_H-elongata_contig106610.543.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIA
VGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARD
EGVLTYWRGGGTT
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mRNA from alignment at H-elongata_contig106610:217..1321-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106610.543.1 ID=mRNA_H-elongata_contig106610.543.1|Name=mRNA_H-elongata_contig106610.543.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1105bp|location=Sequence derived from alignment at H-elongata_contig106610:217..1321- (Himanthalia elongata Himel1 dioecious)
GTAAAGAACGAGGGGGTGATGGGGCTGTACGCAGGCCTGTCGGCGGCCCT GGCTCGACAAGCGTCGTACACGACGCTGCGCTTAGGACTCTACGACTTCA TGAAGCGCGCCGTCATCGATGGTGAGTTCTCGAAGCCCCTATCACCACCG CGTTCTCCTTTGTTGGGCTAGCGAGTGTCGTGATCGGATGCCGTGAAAGC TTCCTCTTGCGTTTGCGTCCGTCGGCGCCCTTCGTATGGCCCCCCACAAT GGTGAAAAACTTGCGCGCCTCCTGTTAACCTCTCTTGAGAAAGAAAGCTT TCGTCTCCCTGGTGTACCGTAGGCGGCATATACAATATACCCTATATATA TAATCTGTATCACGATAGTACATGCAGTAGAGACACACGCGCGTGATGCA GGTCCGCTGAAATAACGCCTTCCTGCGTACAAGAAACCGCCAAAAAATTA CCAACCATAGGAGGCATTCTTTGTAACCCTTTGTGACACGCCGGTGTGTC TGTTTTTTTTTCTTCGTCCAGTGACGTCATTAACCCCCCCGCCCGCCCCC GCCCCGCCCTCTCAGGGAGCCGCGGTAAGGGCGCATTGCATCCCGTCCTG GCACGGATCGCTGTCGGAGCGATTTCGGGGGGCATGGCATCGTTCTGTTC GTGTCCGATAGAGGTCTGCTTGGTCAGAATGCAGGTAACGGTTTGGCTGG TGCTGGGACCCGATACCGCGCCGTTATCGTACACCCGTCCCTCAAAATCT TCCACCTTCCAATGCGTGGTCCACCATCCCAACAACGCTCATAGAGAGAA CTTCTTAGACCATGAACCTCAACCTTACATGCCACTTTACCCGGACGAAT TTAGGCGCCGGCCGGACACTGCAGTCGGGCGCGGTCCTCTCTACCCCGAG CCGGCTAAGCGTTTGATGCATGTCTCTTGATGCCGTGTCATGCTGTACTC TCCTTCGATCTGGCGCTCTCTCGATTTGATTCTATCAGGCCGACGGCAAG CTCCCGAAAGAGAAGCAGAGGGGGTACCGCGGGGTGTTTGACGCCCTGTA CAAGATCGCGAGGGACGAGGGCGTTTTGACCTACTGGCGGGGCGGGGGCA CGACC
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Coding sequence (CDS) from alignment at H-elongata_contig106610:217..1321-

>mRNA_H-elongata_contig106610.543.1 ID=mRNA_H-elongata_contig106610.543.1|Name=mRNA_H-elongata_contig106610.543.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig106610:217..1321- (Himanthalia elongata Himel1 dioecious)
ATGGGGCTGTACGCAGGCCTGTCGGCGGCCCTGGCTCGACAAGCGTCGTA
CACGACGCTGCGCTTAGGACTCTACGACTTCATGAAGCGCGCCGTCATCG
ATGATGGGGCTGTACGCAGGCCTGTCGGCGGCCCTGGCTCGACAAGCGTC
GTACACGACGCTGCGCTTAGGACTCTACGACTTCATGAAGCGCGCCGTCA
TCGATGGGAGCCGCGGTAAGGGCGCATTGCATCCCGTCCTGGCACGGATC
GCTGTCGGAGCGATTTCGGGGGGCATGGCATCGTTCTGTTCGTGTCCGAT
AGAGGTCTGCTTGGTCAGAATGCAGGGAGCCGCGGTAAGGGCGCATTGCA
TCCCGTCCTGGCACGGATCGCTGTCGGAGCGATTTCGGGGGGCATGGCAT
CGTTCTGTTCGTGTCCGATAGAGGTCTGCTTGGTCAGAATGCAGGCCGAC
GGCAAGCTCCCGAAAGAGAAGCAGAGGGGGTACCGCGGGGTGTTTGACGC
CCTGTACAAGATCGCGAGGGACGAGGGCGTTTTGACCTACTGGCGGGGCG
GGGGCACGACCGCCGACGGCAAGCTCCCGAAAGAGAAGCAGAGGGGGTAC
CGCGGGGTGTTTGACGCCCTGTACAAGATCGCGAGGGACGAGGGCGTTTT
GACCTACTGGCGGGGCGGGGGCACGACC
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