mRNA_H-elongata_contig106610.543.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: D7G058_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G058_ECTSI) HSP 1 Score: 186 bits (472), Expect = 3.770e-56 Identity = 91/120 (75.83%), Postives = 102/120 (85.00%), Query Frame = 1
Query: 1 VKNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDG-SRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
VKNEGV LYAGLSAALARQASYTTLRLGLYD ++R V+D + + +L RI +GA+SGGMASFCSCPIEVCLVRMQADGKLPK++QRGYRGVF ALY+IARDEG L YWRGGGTT
Sbjct: 83 VKNEGVTALYAGLSAALARQASYTTLRLGLYDLLRRLVLDSRTSDMNGVQLLLLRILIGAVSGGMASFCSCPIEVCLVRMQADGKLPKDQQRGYRGVFHALYRIARDEGALAYWRGGGTT 202
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: A0A835ZCT1_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT1_9STRA) HSP 1 Score: 145 bits (365), Expect = 1.180e-39 Identity = 72/125 (57.60%), Postives = 84/125 (67.20%), Query Frame = 1
Query: 1 VKNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVID------GSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
V EG M LY GLSA L RQA+YTTLRLGLYD KR ++ G +GA R VGA+SG ASF SCP+EVCLVRMQ DGKLPK +R Y+ +FDAL +I R+EG+ TYW G GTT
Sbjct: 130 VHEEGAMSLYGGLSAGLLRQATYTTLRLGLYDLGKRLALELIELVTGEPARGAAGGAAMRFVVGALSGAAASFLSCPVEVCLVRMQGDGKLPKAARRNYKSIFDALIRIGREEGLTTYWTGAGTT 254
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: A0A835Z4J2_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J2_9STRA) HSP 1 Score: 138 bits (348), Expect = 6.690e-38 Identity = 68/118 (57.63%), Postives = 86/118 (72.88%), Query Frame = 1
Query: 4 KNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
+ +GV GLYAGLSAA+ RQA YTT RLGLYD +K A+ G VL R+ G +GG+A+F +CPIEVCLVRMQADG+LP ++RGY VF+AL ++A++EGVLTYWRG T
Sbjct: 59 RTQGVKGLYAGLSAAITRQAVYTTARLGLYDIIKAAIAP----PGTEVTVLHRLTTGLAAGGIAAFLTCPIEVCLVRMQADGRLPPAERRGYTNVFNALGRVAKEEGVLTYWRGASPT 172
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: W7TLF9_9STRA (Mitochondrial 2-oxoglutarate malate carrier protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLF9_9STRA) HSP 1 Score: 134 bits (338), Expect = 2.730e-36 Identity = 68/119 (57.14%), Postives = 86/119 (72.27%), Query Frame = 1
Query: 1 VKNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
+K EG GLY+GLSAA+ARQ SYTT+RLG +D +K + + AL L+ + GA ASF +CP+EVCLVRMQADGKLP E++RGY+ V DAL ++AR+EGVLTYWRG G T
Sbjct: 71 IKREGFAGLYSGLSAAIARQMSYTTMRLGFFDEIKAFLAQRQVQENALTRSLSAMTAGAC----ASFLACPVEVCLVRMQADGKLPPEQRRGYKHVGDALLRVAREEGVLTYWRGAGPT 185
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: A0A4D9CTP4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTP4_9STRA) HSP 1 Score: 134 bits (336), Expect = 5.920e-36 Identity = 67/119 (56.30%), Postives = 86/119 (72.27%), Query Frame = 1
Query: 1 VKNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
+K EG GLY+GLSAA+ARQ SYTT+RLG +D +K + + AL ++ + GA ASF +CP+EVCLVRMQADGKLP E++RGY+ V DAL ++AR+EGVLTYWRG G T
Sbjct: 75 IKREGFAGLYSGLSAAIARQMSYTTMRLGFFDEIKAFLAQRQVQENALTRSMSAMTAGAC----ASFLACPVEVCLVRMQADGKLPPEQRRGYKHVGDALLRVAREEGVLTYWRGAGPT 189
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: A0A7S4GIE6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GIE6_9EUGL) HSP 1 Score: 125 bits (314), Expect = 3.930e-33 Identity = 65/116 (56.03%), Postives = 82/116 (70.69%), Query Frame = 1
Query: 1 VKNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSC-PIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRG 345
VK EG+ GLY+GLSAA+ RQ +YTT RLGLY ++ + R +H V A +A GA A+ C C P+EVCLVRMQADG+LP +QRGY+ V DAL ++AR+EGVLTYWRG
Sbjct: 28 VKKEGIPGLYSGLSAAILRQITYTTTRLGLYGTIRDVITPVDRPATVVHRVGAAVAAGA-----AAACVCNPVEVCLVRMQADGRLPPAEQRGYKHVGDALMRVAREEGVLTYWRG 138
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: A0A7S1JD16_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JD16_9EUGL) HSP 1 Score: 124 bits (311), Expect = 1.930e-32 Identity = 62/115 (53.91%), Postives = 83/115 (72.17%), Query Frame = 1
Query: 1 VKNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRG 345
+KNEG GLY+GLSAA+ RQ +YTT RLGLY ++ ++ + VLA + GAI+ S C+ PIEVCLVRMQ+DG+LPK +QR Y+ +FDAL ++AR+EG+LTYWRG
Sbjct: 54 LKNEGAKGLYSGLSAAMMRQVTYTTARLGLYGSLRDLIVKPGQQATLGQRVLAGVGAGAIAS---SVCN-PIEVCLVRMQSDGRLPKAEQRNYKHIFDALGRVAREEGILTYWRG 164
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: D8LMW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW0_ECTSI) HSP 1 Score: 124 bits (310), Expect = 3.360e-32 Identity = 61/115 (53.04%), Postives = 85/115 (73.91%), Query Frame = 1
Query: 13 GVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
G+ G+YAGLSAA+ RQA YTTLR+GLYD+++ + + ++ VL R AVG +GG+ASF CPIEVC+VRMQ+D +LP+ + GY+ + DAL++IA++EGV TYWRG T
Sbjct: 64 GLRGMYAGLSAAVTRQAVYTTLRVGLYDWIRDHAVHKFVKQEDIN-VLHRAAVGLTAGGIASFMCCPIEVCMVRMQSDARLPQADRLGYKHIGDALFRIAKEEGVRTYWRGATPT 177
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: A0A0G4GW21_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GW21_VITBC) HSP 1 Score: 122 bits (305), Expect = 1.980e-31 Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = 1
Query: 4 KNEGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
K EG+ GLY+GLSA + RQA+YTTLR GLY ++ D GA V ++ G SG +AS CP+EV LVRMQADG+LP ++RGY VF+ALY+IA++EG+LT WRG T
Sbjct: 66 KTEGLWGLYSGLSAGITRQATYTTLRGGLYQILR----DRYTVPGANPTVAVKLGCGLTSGAIASVVCCPVEVSLVRMQADGRLPVAERRGYTNVFNALYRIAKEEGILTCWRGSTPT 179
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Match: A0A7S4LEC9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LEC9_9EUGL) HSP 1 Score: 120 bits (300), Expect = 4.740e-31 Identity = 60/116 (51.72%), Postives = 80/116 (68.97%), Query Frame = 1
Query: 10 EGVMGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAVGAISGGMASFCSCPIEVCLVRMQADGKLPKEKQRGYRGVFDALYKIARDEGVLTYWRGGGTT 357
EGV G Y+GLSAA+ RQ +YTT RLGLY ++ A+ +R +H R+ G +GG+A+F P+EVCLVRMQADG+LP +QRGY+ V DAL +IA +EG +TY+RG T
Sbjct: 31 EGVRGFYSGLSAAILRQITYTTARLGLYGTIRDAITPSNRPATIVH----RVGAGVGAGGLAAFMCNPVEVCLVRMQADGRLPAAEQRGYKHVGDALVRIASEEGFVTYYRGSAPT 142 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106610.543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig106610.543.1 >prot_H-elongata_contig106610.543.1 ID=prot_H-elongata_contig106610.543.1|Name=mRNA_H-elongata_contig106610.543.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp MGLYAGLSAALARQASYTTLRLGLYDFMKRAVIDGSRGKGALHPVLARIAback to top mRNA from alignment at H-elongata_contig106610:217..1321- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig106610.543.1 ID=mRNA_H-elongata_contig106610.543.1|Name=mRNA_H-elongata_contig106610.543.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1105bp|location=Sequence derived from alignment at H-elongata_contig106610:217..1321- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig106610:217..1321- >mRNA_H-elongata_contig106610.543.1 ID=mRNA_H-elongata_contig106610.543.1|Name=mRNA_H-elongata_contig106610.543.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig106610:217..1321- (Himanthalia elongata Himel1 dioecious)back to top |