mRNA_H-elongata_contig106516.535.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106516.535.1
Unique NamemRNA_H-elongata_contig106516.535.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106516.535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106516contigH-elongata_contig106516:29..629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size601
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106516.535.1prot_H-elongata_contig106516.535.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106516 48..380 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929595.8341813-UTR-H-elongata_contig106516:28..471622929595.8341813-UTR-H-elongata_contig106516:28..47Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106516 29..47 +
1691679084.1589665-UTR-H-elongata_contig106516:28..471691679084.1589665-UTR-H-elongata_contig106516:28..47Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106516 29..47 +
1622929595.8720682-UTR-H-elongata_contig106516:380..6291622929595.8720682-UTR-H-elongata_contig106516:380..629Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106516 381..629 +
1691679084.1763651-UTR-H-elongata_contig106516:380..6291691679084.1763651-UTR-H-elongata_contig106516:380..629Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106516 381..629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929595.853011-CDS-H-elongata_contig106516:47..3801622929595.853011-CDS-H-elongata_contig106516:47..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106516 48..380 +
1691679084.1689184-CDS-H-elongata_contig106516:47..3801691679084.1689184-CDS-H-elongata_contig106516:47..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106516 48..380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106516.535.1

>prot_H-elongata_contig106516.535.1 ID=prot_H-elongata_contig106516.535.1|Name=mRNA_H-elongata_contig106516.535.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MLPPDEITVHTETLPPPAYFGSTGYRRKTKNRLPPKKYRHIALPPSMSTP
KSGTDEYPNLASLSGRLYNLMEVKKKSFRMVVCVSYLVTTGWILTSAYVT
IQSIKGFRNG*
back to top

mRNA from alignment at H-elongata_contig106516:29..629+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106516.535.1 ID=mRNA_H-elongata_contig106516.535.1|Name=mRNA_H-elongata_contig106516.535.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=601bp|location=Sequence derived from alignment at H-elongata_contig106516:29..629+ (Himanthalia elongata Himel1 dioecious)
CAGGCCATTTGTAATTTATATGTTACCGCCAGATGAAATAACCGTTCACA
CCGAAACATTACCGCCGCCGGCATATTTTGGTAGTACCGGGTACCGCCGA
AAAACAAAAAACCGCCTACCACCGAAAAAGTACCGCCATATTGCATTACC
GCCGTCTATGTCCACCCCCAAAAGCGGTACCGACGAATACCCAAATTTGG
CATCCTTGAGTGGTCGTCTGTACAACTTGATGGAAGTAAAAAAAAAATCC
TTCCGCATGGTGGTTTGTGTTTCCTACCTTGTGACCACGGGCTGGATTTT
GACATCAGCTTATGTGACAATTCAATCAATCAAGGGGTTTCGTAATGGAT
GACCGTAACATGCGGGTGGAAGACCGGGAATGGATGAAGACGGTCCCCCC
AAATGTTTACCTCGACCTCTCTGGCTGGTGGATCCACAACCTTTGTAGGC
GACAATCTGGTCATCACCCCTAGTTCGCCTGCAATCTCACGCCGAACGCC
TCAAACGAAGTGCTTTTGGAGCGAAGAGCGAGGACGGGGGGGACAGCGCG
ACTGCCGATTTCCTGTAGATTTGCCAGGGGACGTCGAGAGACAGCAGTAC
C
back to top

Coding sequence (CDS) from alignment at H-elongata_contig106516:29..629+

>mRNA_H-elongata_contig106516.535.1 ID=mRNA_H-elongata_contig106516.535.1|Name=mRNA_H-elongata_contig106516.535.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig106516:29..629+ (Himanthalia elongata Himel1 dioecious)
ATGTTACCGCCAGATGAAATAACCGTTCACACCGAAACATTACCGCCGCC
GGCATATTTTGGTAGTACCGGGTACCGCCGAAAAACAAAAAACCGCCTAC
CACCGAAAAAGTACCGCCATATTGCATTACCGCCGTCTATGTCCACCCCC
AAAAGCGGTACCGACGAATACCCAAATTTGGCATCCTTGAGTGGTCGTCT
GTACAACTTGATGGAAGTAAAAAAAAAATCCTTCCGCATGGTGGTTTGTG
TTTCCTACCTTGTGACCACGGGCTGGATTTTGACATCAGCTTATGTGACA
ATTCAATCAATCAAGGGGTTTCGTAATGGATGAATGTTACCGCCAGATGA
AATAACCGTTCACACCGAAACATTACCGCCGCCGGCATATTTTGGTAGTA
CCGGGTACCGCCGAAAAACAAAAAACCGCCTACCACCGAAAAAGTACCGC
CATATTGCATTACCGCCGTCTATGTCCACCCCCAAAAGCGGTACCGACGA
ATACCCAAATTTGGCATCCTTGAGTGGTCGTCTGTACAACTTGATGGAAG
TAAAAAAAAAATCCTTCCGCATGGTGGTTTGTGTTTCCTACCTTGTGACC
ACGGGCTGGATTTTGACATCAGCTTATGTGACAATTCAATCAATCAAGGG
GTTTCGTAATGGATGA
back to top