mRNA_H-elongata_contig106496.530.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106496.530.1
Unique NamemRNA_H-elongata_contig106496.530.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig106496.530.1 vs. uniprot
Match: D8LCC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC8_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 9.230e-77
Identity = 125/188 (66.49%), Postives = 158/188 (84.04%), Query Frame = 1 
Query:    1 QTTNYVRTAEQDLLIGLQPSAEALAAGAVKSDSKAKPAPREVKGTTALIAK-MARSSAKGKIDGGCEDEDED-NFMHQEAVRLPENCPACQAPGESLTCMSDIPHFKEVIIMAFDCESCGFKTSEVKGGGAIPSKGTMYTLRVVSEDDFRRDVLKSDTARLELPELQLVLEMGTLGSMYTTIEGLLNK 558
            +T+++ RTA+QD+ +GLQPS EALAAG V + S A+PAPRE++GT AL+A+ M++     + DG   +E+E  +FM +EAVRLP+ CPAC APG SLTC+++IPHFKEV+IMAF+CESCGFK+SEVKGGGAIP KGT YTL  VS+DDFRRDVLKSDTA LE+P+L+LV+EMGTLGSMYTT+EGLL K
Sbjct:  225 KTSHFTRTAQQDMSLGLQPSNEALAAGTVDASSAARPAPREMEGTAALMARIMSKGVGASQGDGKAGEEEEGGSFMRREAVRLPDCCPACGAPGHSLTCLAEIPHFKEVVIMAFNCESCGFKSSEVKGGGAIPPKGTAYTLEAVSKDDFRRDVLKSDTAVLEIPQLELVMEMGTLGSMYTTVEGLLEK 412
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BLAST of mRNA_H-elongata_contig106496.530.1 vs. uniprot
Match: A0A7S4DIZ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIZ4_HETAK)

HSP 1 Score: 169 bits (427), Expect = 1.780e-47
Identity = 90/184 (48.91%), Postives = 118/184 (64.13%), Query Frame = 1 
Query:    7 TNYVRTAEQDLLIGLQPSAEALAAGAVKSDSKAKPAPREVKGTTALIAKMARSSAKGKIDGGCEDEDEDNFMHQEAVRLPENCPACQAPGESLTCMSDIPHFKEVIIMAFDCESCGFKTSEVKGGGAIPSKGTMYTLRVVSEDDFRRDVLKSDTARLELPELQLVLEMGTLGSMYTTIEGLLNK 558
            ++Y RT  QD  +GLQP+ +A   G +     A PA R++        +     A+G I    +D        +E ++ PE CP C APG S  C++DIPHFKE+IIMAFDC  CGFK++E+KGGGAIP KGT  TLRV SE DF RD+LKSD+A + +PEL+L +  G+LG MYTT+EGLL K
Sbjct:   24 SHYARTPTQDRALGLQPTEQAREDGYIDD---ANPAHRQIGAQRGQTVE----GAEGLIFDSSKD-----LGRKEVIQFPEQCPHCHAPGHSNMCLTDIPHFKEIIIMAFDCAECGFKSNEIKGGGAIPDKGTKMTLRVESEGDFARDILKSDSAGVNIPELELEMAAGSLGGMYTTLEGLLAK 195
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BLAST of mRNA_H-elongata_contig106496.530.1 vs. uniprot
Match: A0A812X7E2_SYMMI (Zpr1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X7E2_SYMMI)

HSP 1 Score: 157 bits (398), Expect = 2.580e-45
Identity = 87/179 (48.60%), Postives = 113/179 (63.13%), Query Frame = 1 
Query:   22 TAEQDLLIGLQPSAEALAAGAVKSDSKAKPAPREVKGTTALIAKMARSSAKGKIDGGCEDEDEDNFMHQEAVRLPENCPACQAPGESLTCMSDIPHFKEVIIMAFDCESCGFKTSEVKGGGAIPSKGTMYTLRVVSEDDFRRDVLKSDTARLELPELQLVLEMGTLGSMYTTIEGLLNK 558
            TAEQDL +GLQP       G  + +        E+ G      K++ S+     + G   E+      QE +R+PE+CP+C  PGESLT ++DIPHFKEVIIMAF C  CG+K SEVKGGGA+PS GT  TLR  S +D +RDVLKSD+A + + EL + L  GTLG +Y+T+EGLL K
Sbjct:    1 TAEQDLSLGLQPEH-----GTYRDNKDTNV--HELLGAEFGGHKISGSTNMVMGENG---EEHIELGRQEIIRIPESCPSCNFPGESLTALTDIPHFKEVIIMAFTCSQCGYKNSEVKGGGAVPSMGTQVTLRATSMEDLKRDVLKSDSAMVRIEELDMELSYGTLGGIYSTVEGLLTK 169
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BLAST of mRNA_H-elongata_contig106496.530.1 vs. uniprot
Match: A0A836CEY4_9STRA (ZPR1 zinc-finger domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEY4_9STRA)

HSP 1 Score: 160 bits (404), Expect = 6.920e-44
Identity = 71/117 (60.68%), Postives = 94/117 (80.34%), Query Frame = 1 
Query:  208 EDNFMHQEAVRLPENCPACQAPGESLTCMSDIPHFKEVIIMAFDCESCGFKTSEVKGGGAIPSKGTMYTLRVVSEDDFRRDVLKSDTARLELPELQLVLEMGTLGSMYTTIEGLLNK 558
            ++NF+ +E  R  + CP C+  GE+L CM+DIPHFKEVIIMAF+C+ CG+K++EVKGGG +P +GTM+ L  +S  DF RD+LKSD+  +ELPEL+L ++MGTLGSMYTTIEGLL K
Sbjct:  244 DENFLKREYARFEDFCPNCKRGGETLMCMADIPHFKEVIIMAFNCQECGYKSNEVKGGGEVPLQGTMHKLTAISPKDFARDILKSDSCAIELPELELEMDMGTLGSMYTTIEGLLEK 360
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BLAST of mRNA_H-elongata_contig106496.530.1 vs. uniprot
Match: A0A7S2XY77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY77_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.590e-41
Identity = 87/183 (47.54%), Postives = 114/183 (62.30%), Query Frame = 1 
Query:   10 NYVRTAEQDLLIGLQPSAEALAAGAVKSDSKAKPAPREVKGTTALIAKMARSSAKGKIDGGCEDEDEDNFMHQEAVRLPENCPACQAPGESLTCMSDIPHFKEVIIMAFDCESCGFKTSEVKGGGAIPSKGTMYTLRVVSEDDFRRDVLKSDTARLELPELQLVLEMGTLGSMYTTIEGLLNK 558
            +Y R   QDL IGLQP+ +AL  G +  D K +                ARS      +G   D   D    +E +  PENC  C  PG++  C++DIPHFKEVIIMAFDC +CGFK++EVKGGGAIP +G   TLR  SE D +RDVLKSD+A + +PEL++ +E G+LG +YT++EGLL K
Sbjct:  191 HYRRLPSQDLAIGLQPTQQALEDGFI-DDKKPE--------------HQARSEGVVGAEGLIFDSSAD-VGRKEVIAFPENCCHCGTPGQTNMCVTDIPHFKEVIIMAFDCGNCGFKSNEVKGGGAIPPRGCKTTLRAESEKDLQRDVLKSDSAGISIPELEMEMEAGSLGGLYTSVEGLLVK 357
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BLAST of mRNA_H-elongata_contig106496.530.1 vs. uniprot
Match: A0A7S1XW72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW72_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.020e-40
Identity = 67/111 (60.36%), Postives = 86/111 (77.48%), Query Frame = 1 
Query:  226 QEAVRLPENCPACQAPGESLTCMSDIPHFKEVIIMAFDCESCGFKTSEVKGGGAIPSKGTMYTLRVVSEDDFRRDVLKSDTARLELPELQLVLEMGTLGSMYTTIEGLLNK 558
            +E +R    CP+C   GE L C++DIP FKE+IIMAFDCE CG++T+E+KGGGAIP KG + TLRV+SE+D RR+ LKSDTA + +PE++L L  GTLG MYTT+EG L K
Sbjct:   40 KEVLRFDMACPSCHKDGEQLMCLTDIPFFKEIIIMAFDCEHCGYRTNEIKGGGAIPDKGRITTLRVLSENDMRREFLKSDTAGIYIPEIELELTAGTLGGMYTTVEGALAK 150
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BLAST of mRNA_H-elongata_contig106496.530.1 vs. uniprot
Match: A0A7S2RY09_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RY09_9STRA)

HSP 1 Score: 152 bits (385), Expect = 3.640e-40
Identity = 87/193 (45.08%), Postives = 117/193 (60.62%), Query Frame = 1 
Query:   13 YVRTAEQDLLIGLQPSAEALAAGAVKSDSKAKPAPRE-VKGTTALIAKMARSSAKGKI-----DGGCEDED-----EDNFMHQEAVRLPENCPACQAPGESLTCMSDIPHFKEVIIMAFDCESCGFKTSEVKGGGAIPSKGTMYTLRVVSEDDFRRDVLKSDTARLELPELQLVLEMGTLGSMYTTIEGLLNK 558
            Y RT  QDL +GLQ S EALAA  ++  ++A     E V+G   L+ + A  S  G       +GG + ED           +E +R+P  CP C   GESLTC++DIPHFKEVIIMAFDC  C ++++E+KGGG +P+ G    LRV S +D +RDVLKS TA + + EL +     +LG +YTT+EGLL K
Sbjct:  206 YTRTPHQDLAVGLQISREALAADQLEDTNRAHKLEGETVRGAENLMQRFAGLSTGGGXXXXXQEGGEDGEDGSPELSTELGRREIIRMPTPCPNCGKDGESLTCLADIPHFKEVIIMAFDCSYCNYRSNEIKGGGGVPANGQRCVLRVQSAEDLKRDVLKSATADVVIHELGMEASQASLGGVYTTVEGLLQK 398
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BLAST of mRNA_H-elongata_contig106496.530.1 vs. uniprot
Match: A0A7S2UQT0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQT0_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.100e-39
Identity = 87/191 (45.55%), Postives = 115/191 (60.21%), Query Frame = 1 
Query:    4 TTNYVRTAEQDLLIGLQPSAEALAAGAVKSDSKAKPAPREVKGTTALIAKMARSSAKGKIDGGCEDEDEDNFM------HQEAVRLPENCPACQAPGESLTCMSDIPHFKEVIIMAFDCESCGFKTSEVKGGGAIPSKGTMYTLRVVSEDDFRRDVLKSDTARLELPELQLVLEMGTLGSMYTTIEGLLNK 558
            T NY R+  QD+ +GLQPS EA+ +G + +   A P  + V         M     K K +G       DN +       QE ++ P  C  CQ   E+  C++DIPHFKEVIIMA  CE CG+K++E+KGGGAIP  GT  TLR+ SEDD  R++LKSDTA + +PEL+L L+ G L  +YTT+EGLL K
Sbjct:  110 TVNYFRSPTQDMSLGLQPSKEAVESGTIDN---ANPTHKNVVNVAKGGISMDIDQKKDK-NGQPAPISFDNPLGNTPIGRQEVMKFPTKCSNCQQECETDMCITDIPHFKEVIIMALFCEKCGYKSNEIKGGGAIPKFGTKITLRITSEDDLAREILKSDTAGIAIPELELELDEGGLDGVYTTVEGLLEK 296
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BLAST of mRNA_H-elongata_contig106496.530.1 vs. uniprot
Match: H3GG49_PHYRM (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=H3GG49_PHYRM)

HSP 1 Score: 150 bits (378), Expect = 4.140e-39
Identity = 85/189 (44.97%), Postives = 115/189 (60.85%), Query Frame = 1 
Query:    1 QTTNYVRTAEQDLLIGLQPSAEALAAGAVKSDSKAKPAPREVKGTTALIAKMARSSAKGKIDGGCEDEDEDNFMHQEAVRLPENCPACQAPGESLTCMSDIPHFKEVIIMAFDCESCGFKTSEVKGGGAIPSKGTMYTLRV-VSEDD--FRRDVLKSDTARLELPELQLVLEMGTLGSMYTTIEGLLNK 558
            + T+Y R+ +QDL+ GLQP           S      APR +      + K                 +E N   +E +++P NC ACQAPG S  CM+DIPHFKEVIIM+F+CE+CGFKT+EVK GGAIP +G   TL+V VS D     RD+LKSD+A + +PE++L +  G+LG +YTT+EGLL+K
Sbjct:  279 KVTHYYRSEQQDLICGLQPD---------MSHDTPSQAPRVLPHRNEGLDKFV---------------EEANIAKKEVIQIPANCFACQAPGFSCMCMTDIPHFKEVIIMSFNCEACGFKTNEVKAGGAIPPQGERMTLKVDVSNDPHVLDRDILKSDSACVNIPEIELEMAHGSLGGLYTTVEGLLDK 443
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BLAST of mRNA_H-elongata_contig106496.530.1 vs. uniprot
Match: A0A329SHZ5_9STRA (Zinc finger protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SHZ5_9STRA)

HSP 1 Score: 147 bits (370), Expect = 3.070e-38
Identity = 83/189 (43.92%), Postives = 113/189 (59.79%), Query Frame = 1 
Query:    1 QTTNYVRTAEQDLLIGLQPSAEALAAGAVKSDSKAKPAPREVKGTTALIAKMARSSAKGKIDGGCEDEDEDNFMHQEAVRLPENCPACQAPGESLTCMSDIPHFKEVIIMAFDCESCGFKTSEVKGGGAIPSKGTMYTLRVVSEDD---FRRDVLKSDTARLELPELQLVLEMGTLGSMYTTIEGLLNK 558
            + T+Y R+ +QDL  GLQP           S      APR +      + K                 +E N   +E +++P NC ACQAPG S  CM+DIPHFKEVIIMAF+CE+CGFKT+EVK GGAIP +G   TL+V   +D     RD+LK+D+A + +PE++L +  G+LG +YTT+EGLL+K
Sbjct:  223 KVTHYYRSEQQDLDCGLQPD---------MSHDAPSQAPRVLPHRNEGLDKFV---------------EEANIAKKEVIQIPANCFACQAPGFSCMCMTDIPHFKEVIIMAFNCEACGFKTNEVKAGGAIPPQGERITLKVDPINDPNVMDRDILKADSACVNIPEIELEMAHGSLGGLYTTVEGLLDK 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106496.530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCC8_ECTSI9.230e-7766.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4DIZ4_HETAK1.780e-4748.91Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A812X7E2_SYMMI2.580e-4548.60Zpr1 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A836CEY4_9STRA6.920e-4460.68ZPR1 zinc-finger domain-containing protein (Fragme... [more]
A0A7S2XY77_9STRA1.590e-4147.54Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1XW72_9STRA3.020e-4060.36Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2RY09_9STRA3.640e-4045.08Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2UQT0_9STRA1.100e-3945.55Hypothetical protein n=1 Tax=Attheya septentrional... [more]
H3GG49_PHYRM4.140e-3944.97Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A329SHZ5_9STRA3.070e-3843.92Zinc finger protein n=1 Tax=Phytophthora cactorum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106496contigH-elongata_contig106496:318..1984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score251.9
Seed ortholog evalue2.3e-64
Seed eggNOG ortholog2880.D8LCC8
Preferred nameZPR1
KEGG koko:K06874,ko:K09025
KEGG Pathwayko03320,map03320
GOsGO:0000082,GO:0000083,GO:0000086,GO:0000226,GO:0000278,GO:0001701,GO:0001763,GO:0001824,GO:0001832,GO:0001833,GO:0001834,GO:0002009,GO:0002181,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006355,GO:0006401,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007424,GO:0007430,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008283,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009653,GO:0009719,GO:0009743,GO:0009746,GO:0009749,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010941,GO:0012501,GO:0015030,GO:0016043,GO:0016070,GO:0016604,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0021510,GO:0022008,GO:0022402,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030575,GO:0030576,GO:0030971,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0031641,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032797,GO:0032879,GO:0032880,GO:0032991,GO:0033120,GO:0033157,GO:0033267,GO:0033554,GO:0034284,GO:0034641,GO:0034645,GO:0034655,GO:0035148,GO:0035149,GO:0035152,GO:0035239,GO:0035295,GO:0036477,GO:0040007,GO:0040008,GO:0042023,GO:0042221,GO:0042306,GO:0042307,GO:0042594,GO:0042981,GO:0042995,GO:0043005,GO:0043009,GO:0043025,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043523,GO:0043524,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044839,GO:0044843,GO:0045893,GO:0045927,GO:0045935,GO:0046483,GO:0046700,GO:0046822,GO:0046824,GO:0046872,GO:0046914,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051239,GO:0051252,GO:0051254,GO:0051716,GO:0051960,GO:0060255,GO:0060341,GO:0060429,GO:0060446,GO:0060541,GO:0060548,GO:0060562,GO:0061138,GO:0061564,GO:0061770,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070848,GO:0070849,GO:0070887,GO:0071310,GO:0071363,GO:0071364,GO:0071495,GO:0071496,GO:0071704,GO:0071840,GO:0071931,GO:0080090,GO:0090087,GO:0090304,GO:0090316,GO:0097458,GO:0097504,GO:0120025,GO:0120036,GO:0120038,GO:0150034,GO:1900180,GO:1900182,GO:1901214,GO:1901215,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1902680,GO:1902742,GO:1903047,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904951,GO:1990261,GO:1990782,GO:2000026,GO:2000112,GO:2000671,GO:2000672,GO:2001141
EggNOG free text desc.pre-mRNA catabolic process
EggNOG OGsCOG1779@1,KOG2703@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536
Hectar predicted targeting categoryother localisation
Exons3
Model size558
Cds size558
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106496.530.1prot_H-elongata_contig106496.530.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106496 318..1984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929595.4898286-CDS-H-elongata_contig106496:317..4911622929595.4898286-CDS-H-elongata_contig106496:317..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106496 318..491 +
1691679084.0346954-CDS-H-elongata_contig106496:317..4911691679084.0346954-CDS-H-elongata_contig106496:317..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106496 318..491 +
1622929595.521852-CDS-H-elongata_contig106496:1061..12561622929595.521852-CDS-H-elongata_contig106496:1061..1256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106496 1062..1256 +
1691679084.043856-CDS-H-elongata_contig106496:1061..12561691679084.043856-CDS-H-elongata_contig106496:1061..1256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106496 1062..1256 +
1622929595.5392418-CDS-H-elongata_contig106496:1795..19841622929595.5392418-CDS-H-elongata_contig106496:1795..1984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106496 1796..1984 +
1691679084.0538886-CDS-H-elongata_contig106496:1795..19841691679084.0538886-CDS-H-elongata_contig106496:1795..1984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106496 1796..1984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106496.530.1

>prot_H-elongata_contig106496.530.1 ID=prot_H-elongata_contig106496.530.1|Name=mRNA_H-elongata_contig106496.530.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
QTTNYVRTAEQDLLIGLQPSAEALAAGAVKSDSKAKPAPREVKGTTALIA
KMARSSAKGKIDGGCEDEDEDNFMHQEAVRLPENCPACQAPGESLTCMSD
IPHFKEVIIMAFDCESCGFKTSEVKGGGAIPSKGTMYTLRVVSEDDFRRD
VLKSDTARLELPELQLVLEMGTLGSMYTTIEGLLNK
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mRNA from alignment at H-elongata_contig106496:318..1984+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106496.530.1 ID=mRNA_H-elongata_contig106496.530.1|Name=mRNA_H-elongata_contig106496.530.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1667bp|location=Sequence derived from alignment at H-elongata_contig106496:318..1984+ (Himanthalia elongata Himel1 dioecious)
CAGACAACGAACTACGTCCGAACGGCGGAGCAGGACTTGTTGATAGGCCT
GCAGCCTTCGGCGGAGGCGCTGGCGGCGGGAGCCGTCAAATCTGACTCGA
AGGCGAAGCCTGCACCGCGTGAGGTGAAGGGAACGACCGCCTTGATCGCG
AAGATGGCTCGGTCAAGCGCAAAGGTGAGGAGCGGGAGAAGAGGTCCCGT
GAGATAACTATGAGATAGACGCAATGACCCCGCTCGTCACGCGACGCCGA
CATGTCGATCTGCTGTGATGTTCTGCTTTTCCTTCCCTCGCCTATTCTTC
GCGGCAATGTGCATTGTCGATCGTCGGTCGCACACCACGACGCAGGGAGG
GGGAGGGGGTTAAAGCGAAGGGTGTTGCGGCCGATCTCGTCTCCCTGGTA
TGGTAAAATCGCACGATGTGCCGTGTCGTAGCCCTCCTACACTACTCTCG
TACGATACACCGTAGTTTCTGGTTTGAGTGAAGGGGAGAGATACCGGACT
GGTTTTATCCTTCTCTGATCCTCGTCGTGTAGATGATGATGGACTGGTAT
TAGCTGTCCTCGGCTGGCGAAAGTGTAATATAACCGCCCGTTCGGACCCA
GACGGGGAAGGACAACACGCGGATACCCGGCCGGACGCAGAACCGCCGCC
TTTTGCCTTGGAACGAATTGTTTATTTCTATCTAAAACAGAGCCAAGTCA
CACACCTGTCTGCGCCGCGGTGGTCCACGCCTGATCTCGGGCAGGGTAAA
ATCGACGGGGGCTGCGAAGATGAAGACGAAGACAACTTCATGCACCAGGA
AGCCGTGCGGCTGCCCGAGAACTGCCCGGCCTGTCAGGCTCCTGGAGAGT
CCCTTACGTGCATGTCCGATATCCCTCACTTCAAAGAGGTTATAATCATG
GCCTTCGATTGCGAGTCCTGCGGCTTCAAGACGTCAGAGGTGCGCGCGTA
GGTGACCAACGGTGGGGGACAGGCGGGCGGCGCGAACAAGCGACACCGCA
CGTTGTCGCTAGAGCTCGACCCTGCGGTCGTCGAAAATATATCGCCTTGC
ATCACCGCCACTGCGAGCCGGTTAATGCATCACCGCCGCTGGTTGTGAGC
AATAGCAAATAAGGATTGTTCGCACGACGTGCACGGTGATTGATTGCAGC
GTTTGCGTGAAGCTACACCGGGGTCCCCAACCCCCGGAAAACGATATATA
GGCGTGTAGACGTTTACATCGATTTGAGCGTGCGAGATTGTGGACGCAGC
AGCGATCACCGGGAAAAGAAAAAAACTTTGTTTTAAACCCTTTTGGAACT
GGATTTCAAGTTTTGTATTGAATTTAGTGTTTAAAAAATAGATCGAGGTT
CCGTACGGGTGAAATTTATTAAGCACCTCAGCATGCCACCATCGACGACT
TTTTCTGTTGGAAGACTACAGACTTTTCTCCCGCTTTATTTCGGGGTCTC
ATGTCGGGATGTATGCCATTTCATCCAGGTAAAGGGGGGCGGAGCGATTC
CTTCGAAGGGCACGATGTACACCCTGCGGGTTGTTTCCGAGGATGATTTT
CGGCGGGACGTGCTCAAGTCGGATACCGCAAGACTTGAACTGCCTGAGCT
CCAGCTGGTGCTGGAAATGGGGACGTTGGGCAGTATGTACACCACTATCG
AGGGGCTCCTAAACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig106496:318..1984+

>mRNA_H-elongata_contig106496.530.1 ID=mRNA_H-elongata_contig106496.530.1|Name=mRNA_H-elongata_contig106496.530.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig106496:318..1984+ (Himanthalia elongata Himel1 dioecious)
CAGACAACGAACTACGTCCGAACGGCGGAGCAGGACTTGTTGATAGGCCT
GCAGCCTTCGGCGGAGGCGCTGGCGGCGGGAGCCGTCAAATCTGACTCGA
AGGCGAAGCCTGCACCGCGTGAGGTGAAGGGAACGACCGCCTTGATCGCG
AAGATGGCTCGGTCAAGCGCAAAGCAGACAACGAACTACGTCCGAACGGC
GGAGCAGGACTTGTTGATAGGCCTGCAGCCTTCGGCGGAGGCGCTGGCGG
CGGGAGCCGTCAAATCTGACTCGAAGGCGAAGCCTGCACCGCGTGAGGTG
AAGGGAACGACCGCCTTGATCGCGAAGATGGCTCGGTCAAGCGCAAAGGG
TAAAATCGACGGGGGCTGCGAAGATGAAGACGAAGACAACTTCATGCACC
AGGAAGCCGTGCGGCTGCCCGAGAACTGCCCGGCCTGTCAGGCTCCTGGA
GAGTCCCTTACGTGCATGTCCGATATCCCTCACTTCAAAGAGGTTATAAT
CATGGCCTTCGATTGCGAGTCCTGCGGCTTCAAGACGTCAGAGGGTAAAA
TCGACGGGGGCTGCGAAGATGAAGACGAAGACAACTTCATGCACCAGGAA
GCCGTGCGGCTGCCCGAGAACTGCCCGGCCTGTCAGGCTCCTGGAGAGTC
CCTTACGTGCATGTCCGATATCCCTCACTTCAAAGAGGTTATAATCATGG
CCTTCGATTGCGAGTCCTGCGGCTTCAAGACGTCAGAGGTAAAGGGGGGC
GGAGCGATTCCTTCGAAGGGCACGATGTACACCCTGCGGGTTGTTTCCGA
GGATGATTTTCGGCGGGACGTGCTCAAGTCGGATACCGCAAGACTTGAAC
TGCCTGAGCTCCAGCTGGTGCTGGAAATGGGGACGTTGGGCAGTATGTAC
ACCACTATCGAGGGGCTCCTAAACAAGGTAAAGGGGGGCGGAGCGATTCC
TTCGAAGGGCACGATGTACACCCTGCGGGTTGTTTCCGAGGATGATTTTC
GGCGGGACGTGCTCAAGTCGGATACCGCAAGACTTGAACTGCCTGAGCTC
CAGCTGGTGCTGGAAATGGGGACGTTGGGCAGTATGTACACCACTATCGA
GGGGCTCCTAAACAAG
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