mRNA_H-elongata_contig106218.507.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106218.507.1
Unique NamemRNA_H-elongata_contig106218.507.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig106218.507.1 vs. uniprot
Match: A0A6S9ETF7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ETF7_HETAK)

HSP 1 Score: 105 bits (261), Expect = 3.810e-24
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:    1 IQLQSAYQAVMGSEPPYTNYTGNFKGVLDYVWFSAPLIRPLAVAPVPTAEDIMKCGIALPNVQSSSDHIMLLCDIQLGG 237
            IQL SAY  V G EPPYTN++G F GVLDY+WF+ P +RPLAV+PVP   ++   G  +PN   SSDH +L CD+QLGG
Sbjct:  548 IQLASAYATVQGREPPYTNHSGRFTGVLDYIWFARPHLRPLAVSPVPDLAEVEAAGEGMPNCLYSSDHALLCCDVQLGG 626
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BLAST of mRNA_H-elongata_contig106218.507.1 vs. uniprot
Match: A0A7S2PG38_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PG38_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.980e-24
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   13 SAYQAVMGSEPPYTNYTGNFKGVLDYVWFSAPLIRPLAVAPVPTAEDIMKCGIALPNVQSSSDHIMLLCDIQLGG 237
            S Y  VMG EPP+TNYT NFKGVLDY+WFS   +RPL+  P+P  E+++K G  LP+   SSDH+ML+ D+QLGG
Sbjct:  534 SVYSTVMGEEPPHTNYTVNFKGVLDYIWFSVQHLRPLSTVPIPDEEELLKYGEGLPSTMQSSDHVMLIADMQLGG 608
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BLAST of mRNA_H-elongata_contig106218.507.1 vs. uniprot
Match: D7FT71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT71_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.470e-23
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:  136 VPTAEDIMKCGIALPNVQSSSDHIMLLCDIQLGGGGG----AQPPASPIFQGQPK 288
            VPTAEDIMKCGIALPNVQSSSDHIMLLCD+QLGG  G    AQPPASPIFQGQ K
Sbjct:    8 VPTAEDIMKCGIALPNVQSSSDHIMLLCDVQLGGATGHSGQAQPPASPIFQGQQK 62
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BLAST of mRNA_H-elongata_contig106218.507.1 vs. uniprot
Match: A0A7S2Y6H0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y6H0_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.090e-23
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    4 QLQSAYQAVMGSEPPYTNYTGNFKGVLDYVWFSAPLIRPLAVAPVPTAEDIMKCGIALPNVQSSSDHIMLLCDIQLGGGG 243
            QL SAYQAV+G EP  TN+T NFKGVLDY+W+SA  +RPL+ AP+P    + K G ALP+ + SSDHIML+ D+Q+   G
Sbjct:  154 QLGSAYQAVLGDEPWVTNFTLNFKGVLDYIWYSAQNLRPLSAAPIPDEAQLTKHGEALPSTEYSSDHIMLISDLQVVSNG 233
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BLAST of mRNA_H-elongata_contig106218.507.1 vs. uniprot
Match: A0A6U1PWN2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1PWN2_CYCTE)

HSP 1 Score: 100 bits (249), Expect = 6.320e-23
Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    4 QLQSAYQAVMGSEPPYTNYTGNFKGVLDYVWFSAPLIRPLAVAPVPTAEDIMKCGIALPNVQSSSDHIMLLCDIQLGGGGGAQPP 258
            QL SAYQ V+G EP  TNYT NFKGVLDYVW+SA  +RPL+ APVP    +++ G ALP+ + SSDH+MLL D+Q+     A+PP
Sbjct:  314 QLGSAYQTVLGEEPKVTNYTTNFKGVLDYVWYSAQNLRPLSAAPVPDEATLIRHGEALPSTEFSSDHLMLLSDMQIMSS--ARPP 396
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BLAST of mRNA_H-elongata_contig106218.507.1 vs. uniprot
Match: A0A1Z5J870_FISSO (CCR4-NOT transcription complex subunit 6 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J870_FISSO)

HSP 1 Score: 100 bits (248), Expect = 2.210e-22
Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    4 QLQSAYQAVMGSEPPYTNYTGNFKGVLDYVWFSAPLIRPLAVAPVPTAEDIMKCGIALPNVQSSSDHIMLLCDIQLGGGG 243
            QL SAYQ ++G EP  TNYT NFKG LDY+W+SA  +RPL+ APVP  E +   G ALP+ + SSDHIML+ D+Q+ GGG
Sbjct:  549 QLGSAYQTILGDEPWVTNYTVNFKGTLDYIWYSAQNLRPLSAAPVPDEERLTLHGEALPSTEFSSDHIMLISDMQIIGGG 628
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BLAST of mRNA_H-elongata_contig106218.507.1 vs. uniprot
Match: B7FR95_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FR95_PHATC)

HSP 1 Score: 99.4 bits (246), Expect = 4.100e-22
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    4 QLQSAYQAVMGSEPPYTNYTGNFKGVLDYVWFSAPLIRPLAVAPVPTAEDIMKCGIALPNVQSSSDHIMLLCDIQLGGGG 243
            QL SAYQ V+G EP  TN+T NFKGVLDY+W+SA  +RPL+ AP+P  + + K G ALP+ + SSDHIML+ D+Q+ G G
Sbjct:  544 QLGSAYQTVLGEEPWTTNFTVNFKGVLDYIWYSAQNLRPLSAAPIPEEKQLTKNGEALPSTEYSSDHIMLISDMQIIGNG 623
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BLAST of mRNA_H-elongata_contig106218.507.1 vs. uniprot
Match: A0A835Z3I4_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I4_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.190e-22
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:   13 SAYQAVMGSEPPYTNYTGNFKGVLDYVWFSAPLIRPLAVAPVPTAEDIMKCGIALPNVQSSSDHIMLLCDIQL 231
            SAY AV   EPPYTNYT +F+G LDY+W SAP +RPLAV  VP+ +DI +CG ++PNV +SSDH++L  D+Q+
Sbjct:  574 SAYAAVTLDEPPYTNYTDSFRGTLDYIWCSAPDLRPLAVMQVPSEDDIRRCGPSMPNVAASSDHVLLCADVQV 646
[Close]
BLAST of mRNA_H-elongata_contig106218.507.1 vs. uniprot
Match: A0A7S2Y517_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y517_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.060e-21
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    4 QLQSAYQAVMGSEPPYTNYTGNFKGVLDYVWFSAPLIRPLAVAPVPTAEDIMKCGIALPNVQSSSDHIMLLCDIQLGGGG 243
            QL SAYQAV+G EP  TN+T NFKGVLDY+W+SA  +RPL+ AP+P    + K G ALP+ + SSDHIML+ D+Q+   G
Sbjct:  577 QLGSAYQAVLGDEPWVTNFTLNFKGVLDYIWYSAQNLRPLSAAPIPDEAQLTKHGEALPSTEYSSDHIMLISDLQVVSNG 656
[Close]
BLAST of mRNA_H-elongata_contig106218.507.1 vs. uniprot
Match: A0A7S2RJ55_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJ55_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.410e-21
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    7 LQSAYQAVMGSEPPYTNYTGNFKGVLDYVWFSAPLIRPLAVAPVPTAEDIMKCGIALPNVQSSSDHIMLLCDIQLGG 237
            L SAY AV G EP YTNYT  F+GVLDY+W+S   +RPL V  VPT E I   G ALPNVQ SSDH+++  D+QLGG
Sbjct:  491 LMSAYAAVTGLEPVYTNYTQVFQGVLDYIWYSGQHLRPLGVLEVPTEEAIHSVGQALPNVQYSSDHVLMSVDLQLGG 567
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106218.507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S9ETF7_HETAK3.810e-2458.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2PG38_9STRA6.980e-2458.67Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
D7FT71_ECTSI2.470e-2385.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2Y6H0_9STRA4.090e-2357.50Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A6U1PWN2_CYCTE6.320e-2357.65Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1Z5J870_FISSO2.210e-2258.75CCR4-NOT transcription complex subunit 6 n=2 Tax=F... [more]
B7FR95_PHATC4.100e-2257.50Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A835Z3I4_9STRA4.190e-2258.90Endonuclease/exonuclease/phosphatase n=1 Tax=Tribo... [more]
A0A7S2Y517_9STRA1.060e-2157.50Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2RJ55_9STRA1.410e-2161.04Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106218contigH-elongata_contig106218:113..424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue2e-16
Seed eggNOG ortholog2850.Phatr42429
KEGG koko:K12603
KEGG Pathwayko03018,map03018
GOsGO:0000271,GO:0000932,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005982,GO:0005984,GO:0005985,GO:0005986,GO:0006073,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009311,GO:0009312,GO:0009987,GO:0010467,GO:0016051,GO:0016070,GO:0016071,GO:0019252,GO:0032991,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1990904
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs2XAWW@2836,COG5239@1,KOG0620@2759
EC3.1.13.4
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size282
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929593.5420353-UTR-H-elongata_contig106218:112..1421622929593.5420353-UTR-H-elongata_contig106218:112..142Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106218 113..142 +
1691679083.3597915-UTR-H-elongata_contig106218:112..1421691679083.3597915-UTR-H-elongata_contig106218:112..142Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106218 113..142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929593.5562148-CDS-H-elongata_contig106218:142..4241622929593.5562148-CDS-H-elongata_contig106218:142..424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106218 143..424 +
1691679083.3713746-CDS-H-elongata_contig106218:142..4241691679083.3713746-CDS-H-elongata_contig106218:142..424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106218 143..424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106218.507.1prot_H-elongata_contig106218.507.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106218 143..424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106218.507.1

>prot_H-elongata_contig106218.507.1 ID=prot_H-elongata_contig106218.507.1|Name=mRNA_H-elongata_contig106218.507.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MGSEPPYTNYTGNFKGVLDYVWFSAPLIRPLAVAPVPTAEDIMKCGIALP
NVQSSSDHIMLLCDIQLGGGGGAQPPASPIFQGQPKVCNIDRL*
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mRNA from alignment at H-elongata_contig106218:113..424+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106218.507.1 ID=mRNA_H-elongata_contig106218.507.1|Name=mRNA_H-elongata_contig106218.507.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig106218:113..424+ (Himanthalia elongata Himel1 dioecious)
ATCCAGCTTCAGTCAGCCTACCAGGCCGTGATGGGATCTGAGCCCCCTTA
CACCAACTACACGGGCAACTTCAAGGGGGTCTTGGACTACGTGTGGTTCT
CGGCGCCTCTTATCCGACCGCTGGCGGTGGCCCCGGTGCCGACCGCGGAG
GACATAATGAAGTGCGGCATCGCCCTACCGAACGTGCAGTCTTCCTCGGA
CCACATAATGCTCTTGTGCGACATCCAGCTCGGGGGCGGGGGCGGGGCGC
AGCCGCCGGCGTCGCCGATTTTCCAGGGGCAACCGAAGGTATGTAACATT
GATCGATTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig106218:113..424+

>mRNA_H-elongata_contig106218.507.1 ID=mRNA_H-elongata_contig106218.507.1|Name=mRNA_H-elongata_contig106218.507.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig106218:113..424+ (Himanthalia elongata Himel1 dioecious)
ATGGGATCTGAGCCCCCTTACACCAACTACACGGGCAACTTCAAGGGGGT
CTTGGACTACGTGTGGTTCTCGGCGCCTCTTATCCGACCGCTGGCGGTGG
CCCCGGTGCCGACCGCGGAGGACATAATGAAGTGCGGCATCGCCCTACCG
AACGTGCAGTCTTCCTCGGACCACATAATGCTCTTGTGCGACATCCAGCT
CGGGGGCGGGGGCGGGGCGCAGCCGCCGGCGTCGCCGATTTTCCAGGGGC
AACCGAAGGTATGTAACATTGATCGATTGTGAATGGGATCTGAGCCCCCT
TACACCAACTACACGGGCAACTTCAAGGGGGTCTTGGACTACGTGTGGTT
CTCGGCGCCTCTTATCCGACCGCTGGCGGTGGCCCCGGTGCCGACCGCGG
AGGACATAATGAAGTGCGGCATCGCCCTACCGAACGTGCAGTCTTCCTCG
GACCACATAATGCTCTTGTGCGACATCCAGCTCGGGGGCGGGGGCGGGGC
GCAGCCGCCGGCGTCGCCGATTTTCCAGGGGCAACCGAAGGTATGTAACA
TTGATCGATTGTGA
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