mRNA_H-elongata_contig106124.494.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106124.494.1
Unique NamemRNA_H-elongata_contig106124.494.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig106124.494.1 vs. uniprot
Match: D7FRS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS9_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 8.390e-22
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 1
Query:   61 ATNTSSVDFVVYLQGGP-ACAHNQTLCLELLEQNRTGASFLTSDGFPDTIAGYGLLSDDAEENALYSTYNKVYVPYCTMDMYLMDAEASDGGGLYFGGRPYLE 366
            ATN SS D++ +LQ G  +CAH+ TLC   +E    GA  +T+    + I G+ LLS DA ENAL+ST+N+VYVP+CT DM+L+D + SD G L F GR  LE
Sbjct:    2 ATNASSSDYIFFLQAGSVSCAHDATLCERQIE----GAEIITTGSEREVILGHNLLSGDAAENALFSTFNRVYVPHCTADMFLLDTQ-SDDGQLQFRGRALLE 99          
BLAST of mRNA_H-elongata_contig106124.494.1 vs. uniprot
Match: D7G376_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G376_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 4.520e-17
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   19 TAVCADGSRGHYFAATNTSSVDFVVYLQGGPACAHNQTLCLELLEQNRTGASFLTSDGFPDTIAGYGLLSDDAEENALY 255
            +AVCADGS G ++ ATNTSS D+V+++QGG ACA+++ LC E L+         TS G PD +  +G+LSDD EEN LY
Sbjct:   55 SAVCADGSPGVFYMATNTSSTDYVMFIQGGGACAYDEELCDEYLDDRPQA---FTSTGLPDAMNAHGVLSDDPEENPLY 130          
BLAST of mRNA_H-elongata_contig106124.494.1 vs. uniprot
Match: D1LX95_SACKO (Notum protein n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=D1LX95_SACKO)

HSP 1 Score: 65.5 bits (158), Expect = 6.090e-10
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 1
Query:   19 TAVCADGSRGHYFAATNTSSVDFVVYLQGGPACAHNQTLCLELLEQNRTGASFLTSDGFPDTIAGYGLLSDDAEENALYSTYNKVYVPYCTMDMYLMDAEASDGGGLYFG 348
            T  C DGS   Y+   +  S  ++++L+GG  C  + + C    E  R     ++S  +    AG GLLS D EEN  +   NKV++PYC+ D++   A A  GG  + G
Sbjct:   77 TVTCNDGSPAGYYLYPSNGSTRWLIFLEGGWYCFDDDS-CQSRWESMR---GLMSSTRWTPEKAGSGLLSPDPEENPNWWNANKVFIPYCSSDVWSGTARADQGGYAFMG 182          
BLAST of mRNA_H-elongata_contig106124.494.1 vs. uniprot
Match: UPI0010FC76B1 (pectin acetylesterase 5-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI0010FC76B1)

HSP 1 Score: 65.1 bits (157), Expect = 8.230e-10
Identity = 34/95 (35.79%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   22 AVCADGSRGHYFAATNTSSVDFVVYLQGGPACAHNQTLCLELLEQNRTGASFLTSDGFPDTIAGYGLLSDDAEENALYSTYNKVYVPYCTMDMYL 306
            A+C DGS   ++ + N  S  +VV LQ G +C    + CL     +R+  SF +S  + D + G  + SDD  EN ++ ++NKV+VPYC+ D+++
Sbjct:   83 ALCLDGSEAVFYLSRNPHSKHWVVQLQAGGSCGTYDS-CL-----HRSRGSFGSSRNYSDYLTGTFVASDDPGENPMFHSWNKVFVPYCSGDVFV 171          
BLAST of mRNA_H-elongata_contig106124.494.1 vs. uniprot
Match: A0A3M6T851_POCDA (Uncharacterized protein n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6T851_POCDA)

HSP 1 Score: 64.7 bits (156), Expect = 1.130e-9
Identity = 33/95 (34.74%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   22 AVCADGSRGHYFAATNTSSVDFVVYLQGGPACAHNQTLCLELLEQNRTGASFLTSDGFPDTIAGYGLLSDDAEENALYSTYNKVYVPYCTMDMYL 306
            A+C DGS   ++ + N+ S  +VV LQ G +C   ++ CL     +R+     +S  + D + G  + SDD +EN ++S++NKV+VPYC+ D+++
Sbjct:   83 ALCLDGSEAVFYLSRNSDSKYWVVQLQEGGSCGTYES-CL-----HRSRGPLGSSRNYSDYLTGTFVASDDPQENPMFSSWNKVFVPYCSGDVFV 171          
BLAST of mRNA_H-elongata_contig106124.494.1 vs. uniprot
Match: UPI001955A0DC (inactive palmitoleoyl-protein carboxylesterase notum1b n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955A0DC)

HSP 1 Score: 62.4 bits (150), Expect = 7.220e-9
Identity = 36/113 (31.86%), Postives = 57/113 (50.44%), Query Frame = 1
Query:   28 CADGSRGHYFAATNTSSVDFVVYLQGGPACAHNQTLCLELLEQNRTGASFLTSDGFPDTIAGYGLLSDDAEENALYSTYNKVYVPYCTMDMYLMDAEASDGGGLYFGGRPYLE 366
            C DGS   Y+   +  S  ++++L+GG  C   QT C    E  R    F++S  +P T  G G+LS   EEN  +   N+V+VPYC+ D++   +  +D     F G   ++
Sbjct:   82 CNDGSPAGYYIKESRGSRRWLMFLEGGWYCFSKQT-CDSRYENMRR---FMSSSKWPSTRTGTGILSPQPEENPHWWNANRVFVPYCSSDVWSGSSPKTDQSDYVFMGSQIIQ 190          
BLAST of mRNA_H-elongata_contig106124.494.1 vs. uniprot
Match: UPI00106A3271 (pectin acetylesterase 8-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A3271)

HSP 1 Score: 62.0 bits (149), Expect = 9.830e-9
Identity = 35/104 (33.65%), Postives = 57/104 (54.81%), Query Frame = 1
Query:   22 AVCADGSRGHYFAATNTSSVDFVVYLQGGPACAHNQTLCLELLEQNRTGASFLTSDGFPDTIAGYGLLSDDAEENALYSTYNKVYVPYCTMDMYLMDAEASDGG 333
            A C D S   ++ + NT + ++V+ LQ G +C     L  E  ++  T  +F +SD   D I G  L S+D E N  +  +NKV++PYC+ D+++   +A D G
Sbjct:   61 ATCLDDSDAAFYISRNTKNHNWVIRLQAGGSCV----LFSECYDRKTT--AFGSSDYLEDYITGTFLTSNDPEVNPTFHRWNKVFIPYCSGDLFVGRKQARDHG 158          
BLAST of mRNA_H-elongata_contig106124.494.1 vs. uniprot
Match: A0A7S4LZT2_GUITH (Hypothetical protein n=3 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4LZT2_GUITH)

HSP 1 Score: 61.6 bits (148), Expect = 1.350e-8
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 1
Query:   22 AVCADGSRGHYFAATNTSSVD-------FVVYLQGGPACAHNQTLCLELLEQNRTGASFLTSDGFPDTIAGYGLLSDDAEENALYSTYNKVYVPYCTMDMYLMDAEASDGG-GLYFGGRPYL 363
            A C DGS G Y+ A  +S          ++V+L GG  C  ++T C     +  T  S ++S  FP+     G+LS D   + L +T NKVYVPYC+ D Y+ DA+ASD   G +F G+  +
Sbjct:   48 ARCNDGSGGAYYFAPASSRGGAMARTDMWLVFLMGGGWC-WDETSCAS---RYSTSPSLMSSKQFPEEREVDGILSADPTISPL-ATANKVYVPYCSSDAYVGDAQASDATYGWHFRGQELI 164          
BLAST of mRNA_H-elongata_contig106124.494.1 vs. uniprot
Match: UPI0009E211A0 (pectin acetylesterase 4-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E211A0)

HSP 1 Score: 58.9 bits (141), Expect = 2.960e-8
Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 1
Query:   22 AVCADGSRGHYFAATNTSSVDFVVYLQGGPACAHNQTLCLELLEQNRTGASFLTSDGFPDTIAGYGLLSDDAEENALYSTYNKVYVPYC 288
            A+C DGS   ++ +    S  +VV LQ G +C    + CL+     R+     +S  + D + G  + SDD  EN ++S++NKV+VPYC
Sbjct:   83 ALCLDGSEAVFYLSRRPDSKHWVVQLQAGGSCGTYDS-CLD-----RSKGPLGSSKNYSDFLTGTFVASDDPAENPMFSSWNKVFVPYC 165          
BLAST of mRNA_H-elongata_contig106124.494.1 vs. uniprot
Match: A0A1S3KIG8_LINUN (palmitoleoyl-protein carboxylesterase notum1 isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KIG8_LINUN)

HSP 1 Score: 60.1 bits (144), Expect = 4.760e-8
Identity = 39/111 (35.14%), Postives = 55/111 (49.55%), Query Frame = 1
Query:   19 TAVCADGSRGHYFAATNTSSVDFVVYLQGGPACAHNQTLCLELLEQNRTGASFLTSDGFPDTIAGYGLLSDDAEENALYSTYNKVYVPYCTMDMYLMDAEASDGGGLYFGG 351
            T  C DGS   Y+   +  S  ++VYL+GG  C  +Q  C      +R     ++S+ +P+T  G G+LS   EEN  +   N VYVPYC+ D +     AS  G   F G
Sbjct:   76 TVTCNDGSPAGYYIRQSYGSKRWIVYLEGGGYC-FDQLSCHGRWLNSR---KLMSSNEWPETKEGTGILSWHPEENPYFYHANIVYVPYCSSDSWSGHKMASGKGEFSFLG 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106124.494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FRS9_ECTSI8.390e-2250.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G376_ECTSI4.520e-1751.90ABC transporter domain-containing protein n=1 Tax=... [more]
D1LX95_SACKO6.090e-1033.64Notum protein n=1 Tax=Saccoglossus kowalevskii Tax... [more]
UPI0010FC76B18.230e-1035.79pectin acetylesterase 5-like n=1 Tax=Acropora mill... [more]
A0A3M6T851_POCDA1.130e-934.74Uncharacterized protein n=3 Tax=Pocilloporidae Tax... [more]
UPI001955A0DC7.220e-931.86inactive palmitoleoyl-protein carboxylesterase not... [more]
UPI00106A32719.830e-933.65pectin acetylesterase 8-like n=1 Tax=Dendronephthy... [more]
A0A7S4LZT2_GUITH1.350e-836.89Hypothetical protein n=3 Tax=Guillardia theta TaxI... [more]
UPI0009E211A02.960e-834.83pectin acetylesterase 4-like n=1 Tax=Orbicella fav... [more]
A0A1S3KIG8_LINUN4.760e-835.14palmitoleoyl-protein carboxylesterase notum1 isofo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106124contigH-elongata_contig106124:421..789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue2.5e-14
Seed eggNOG ortholog2880.D7G376
KEGG koko:K05679,ko:K05681
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
EggNOG free text desc.pectin acetylesterase activity
EggNOG OGsCOG1131@1,KOG0061@2759,KOG4287@1,KOG4287@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein notum homologue
Ec32 orthologEc-25_000250.1
Exons1
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929592.533936-CDS-H-elongata_contig106124:420..7891622929592.533936-CDS-H-elongata_contig106124:420..789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106124 421..789 -
1691679082.9362617-CDS-H-elongata_contig106124:420..7891691679082.9362617-CDS-H-elongata_contig106124:420..789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106124 421..789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106124.494.1prot_H-elongata_contig106124.494.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106124 421..789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106124.494.1

>prot_H-elongata_contig106124.494.1 ID=prot_H-elongata_contig106124.494.1|Name=mRNA_H-elongata_contig106124.494.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
FVLLPSTAVCADGSRGHYFAATNTSSVDFVVYLQGGPACAHNQTLCLELL
EQNRTGASFLTSDGFPDTIAGYGLLSDDAEENALYSTYNKVYVPYCTMDM
YLMDAEASDGGGLYFGGRPYLE*
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mRNA from alignment at H-elongata_contig106124:421..789-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106124.494.1 ID=mRNA_H-elongata_contig106124.494.1|Name=mRNA_H-elongata_contig106124.494.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at H-elongata_contig106124:421..789- (Himanthalia elongata Himel1 dioecious)
TTCGTCTTGTTGCCGTCGACAGCTGTCTGCGCGGATGGCTCGCGCGGCCA CTACTTCGCGGCGACCAATACATCCTCGGTTGACTTCGTCGTTTATCTTC AAGGAGGACCAGCCTGCGCGCACAACCAAACGCTGTGTCTAGAACTGCTC GAGCAGAACCGAACTGGTGCATCGTTTTTAACCTCTGATGGATTTCCCGA CACGATTGCCGGGTACGGGCTCCTCTCTGACGACGCTGAGGAAAACGCTC TCTACAGCACGTATAACAAGGTTTACGTGCCGTATTGCACCATGGATATG TATCTCATGGACGCGGAGGCCTCCGATGGTGGGGGACTTTACTTCGGCGG AAGACCCTATCTCGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig106124:421..789-

>mRNA_H-elongata_contig106124.494.1 ID=mRNA_H-elongata_contig106124.494.1|Name=mRNA_H-elongata_contig106124.494.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig106124:421..789- (Himanthalia elongata Himel1 dioecious)
TTCGTCTTGTTGCCGTCGACAGCTGTCTGCGCGGATGGCTCGCGCGGCCA
CTACTTCGCGGCGACCAATACATCCTCGGTTGACTTCGTCGTTTATCTTC
AAGGAGGACCAGCCTGCGCGCACAACCAAACGCTGTGTCTAGAACTGCTC
GAGCAGAACCGAACTGGTGCATCGTTTTTAACCTCTGATGGATTTCCCGA
CACGATTGCCGGGTACGGGCTCCTCTCTGACGACGCTGAGGAAAACGCTC
TCTACAGCACGTATAACAAGGTTTACGTGCCGTATTGCACCATGGATATG
TATCTCATGGACGCGGAGGCCTCCGATGGTGGGGGACTTTACTTCGGCGG
AAGACCCTATCTCGAGTGATTCGTCTTGTTGCCGTCGACAGCTGTCTGCG
CGGATGGCTCGCGCGGCCACTACTTCGCGGCGACCAATACATCCTCGGTT
GACTTCGTCGTTTATCTTCAAGGAGGACCAGCCTGCGCGCACAACCAAAC
GCTGTGTCTAGAACTGCTCGAGCAGAACCGAACTGGTGCATCGTTTTTAA
CCTCTGATGGATTTCCCGACACGATTGCCGGGTACGGGCTCCTCTCTGAC
GACGCTGAGGAAAACGCTCTCTACAGCACGTATAACAAGGTTTACGTGCC
GTATTGCACCATGGATATGTATCTCATGGACGCGGAGGCCTCCGATGGTG
GGGGACTTTACTTCGGCGGAAGACCCTATCTCGAGTGA
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