mRNA_H-elongata_contig106064.490.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106064.490.1
Unique NamemRNA_H-elongata_contig106064.490.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig106064.490.1 vs. uniprot
Match: A0A067CSH0_SAPPC (HECT domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CSH0_SAPPC)

HSP 1 Score: 89.7 bits (221), Expect = 1.240e-19
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    4 LVISRNGGDSDRLPTAHTCFNHLLLPSYTTKEKLADRLKLAIEQSEGFGL 153
             VISRNG DSDRLPTAHTCFNHLLLP Y T+EK+ DRL+LAI QSEGFGL
Sbjct:  642 FVISRNGPDSDRLPTAHTCFNHLLLPEYATREKMKDRLELAITQSEGFGL 691
[Close]
BLAST of mRNA_H-elongata_contig106064.490.1 vs. uniprot
Match: A0A1V9Z6D7_9STRA (HECT E3 ubiquitin ligase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6D7_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.700e-19
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    4 LVISRNGGDSDRLPTAHTCFNHLLLPSYTTKEKLADRLKLAIEQSEGFGL 153
             VISRNG DSDRLPTAHTCFNHLLLP Y+++EK+ +RLKLAI QSEGFGL
Sbjct:  639 FVISRNGSDSDRLPTAHTCFNHLLLPDYSSQEKMQERLKLAISQSEGFGL 688
[Close]
BLAST of mRNA_H-elongata_contig106064.490.1 vs. uniprot
Match: A0A1V9Z4A7_9STRA (HECT E3 ubiquitin ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4A7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.170e-19
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    4 LVISRNGGDSDRLPTAHTCFNHLLLPSYTTKEKLADRLKLAIEQSEGFGL 153
             VISRNG DSDRLPTAHTCFNHLLLP YTT++K+ +RL+LAI QSEGFGL
Sbjct:  639 FVISRNGPDSDRLPTAHTCFNHLLLPDYTTRDKMKNRLQLAITQSEGFGL 688
[Close]
BLAST of mRNA_H-elongata_contig106064.490.1 vs. uniprot
Match: A0A7S2S0T1_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0T1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.330e-19
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 SLVISRNGGDSDRLPTAHTCFNHLLLPSYTTKEKLADRLKLAIEQSEGFGLR 156
            + VIS+NG DSDRLPT+HTCFNHLLLP Y+T+EKL D+LK AI Q+EGFGLR
Sbjct:  793 TFVISKNGPDSDRLPTSHTCFNHLLLPDYSTEEKLEDKLKCAIRQAEGFGLR 844
[Close]
BLAST of mRNA_H-elongata_contig106064.490.1 vs. uniprot
Match: A0A8K1FM26_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FM26_PYTOL)

HSP 1 Score: 87.8 bits (216), Expect = 5.910e-19
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    4 LVISRNGGDSDRLPTAHTCFNHLLLPSYTTKEKLADRLKLAIEQSEGFGLR 156
             VISRNG DSDRLPTAHTCFNHLLLP Y+++EKL +RL LAI Q+EGFGLR
Sbjct:  729 FVISRNGPDSDRLPTAHTCFNHLLLPDYSSREKLKERLLLAINQAEGFGLR 779
[Close]
BLAST of mRNA_H-elongata_contig106064.490.1 vs. uniprot
Match: A0A225VJJ4_9STRA (HECT E3 ubiquitin ligase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VJJ4_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.920e-19
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    4 LVISRNGGDSDRLPTAHTCFNHLLLPSYTTKEKLADRLKLAIEQSEGFGLR 156
             VISRNG DSDRLPTAHTCFNHLLLP Y+++EKL +RL LAI Q+EGFGLR
Sbjct:  782 FVISRNGPDSDRLPTAHTCFNHLLLPEYSSREKLKERLLLAINQAEGFGLR 832
[Close]
BLAST of mRNA_H-elongata_contig106064.490.1 vs. uniprot
Match: A0A3R7GAK4_9STRA (HECT domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GAK4_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.920e-19
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    4 LVISRNGGDSDRLPTAHTCFNHLLLPSYTTKEKLADRLKLAIEQSEGFGLR 156
             VISRNG DSDRLPTAHTCFNHLLLP Y+++EKL +RL LAI Q+EGFGLR
Sbjct:  793 FVISRNGPDSDRLPTAHTCFNHLLLPEYSSREKLKERLLLAINQAEGFGLR 843
[Close]
BLAST of mRNA_H-elongata_contig106064.490.1 vs. uniprot
Match: A0A5D6XP60_9STRA (HECT domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP60_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.920e-19
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    4 LVISRNGGDSDRLPTAHTCFNHLLLPSYTTKEKLADRLKLAIEQSEGFGLR 156
             VISRNG DSDRLP+AHTCFNHLLLP Y+++EKL +RL LAI QSEGFGLR
Sbjct:  757 FVISRNGSDSDRLPSAHTCFNHLLLPEYSSREKLKERLLLAITQSEGFGLR 807
[Close]
BLAST of mRNA_H-elongata_contig106064.490.1 vs. uniprot
Match: A0A8J5JEX0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JEX0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.920e-19
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    4 LVISRNGGDSDRLPTAHTCFNHLLLPSYTTKEKLADRLKLAIEQSEGFGLR 156
             VISRNG DSDRLPTAHTCFNHLLLP Y+++EKL +RL LAI Q+EGFGLR
Sbjct:  792 FVISRNGPDSDRLPTAHTCFNHLLLPEYSSREKLKERLLLAINQAEGFGLR 842
[Close]
BLAST of mRNA_H-elongata_contig106064.490.1 vs. uniprot
Match: G5AI12_PHYSP (HECT domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G5AI12_PHYSP)

HSP 1 Score: 86.7 bits (213), Expect = 1.510e-18
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    4 LVISRNGGDSDRLPTAHTCFNHLLLPSYTTKEKLADRLKLAIEQSEGFGLR 156
             VISRNG DSDRLPTAHTCFNHLLLP Y++++KL +RL LAI Q+EGFGLR
Sbjct:  705 FVISRNGPDSDRLPTAHTCFNHLLLPEYSSRDKLQERLLLAISQAEGFGLR 755
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106064.490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067CSH0_SAPPC1.240e-1982.00HECT domain-containing protein n=2 Tax=Saprolegnia... [more]
A0A1V9Z6D7_9STRA1.700e-1980.00HECT E3 ubiquitin ligase n=1 Tax=Thraustotheca cla... [more]
A0A1V9Z4A7_9STRA3.170e-1980.00HECT E3 ubiquitin ligase n=1 Tax=Achlya hypogyna T... [more]
A0A7S2S0T1_9STRA4.330e-1975.00Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A8K1FM26_PYTOL5.910e-1978.43Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A225VJJ4_9STRA5.920e-1978.43HECT E3 ubiquitin ligase n=1 Tax=Phytophthora mega... [more]
A0A3R7GAK4_9STRA5.920e-1978.43HECT domain-containing protein n=3 Tax=Phytophthor... [more]
A0A5D6XP60_9STRA5.920e-1978.43HECT domain-containing protein n=1 Tax=Pythium bra... [more]
A0A8J5JEX0_9STRA5.920e-1978.43Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
G5AI12_PHYSP1.510e-1876.47HECT domain-containing protein n=4 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106064contigH-elongata_contig106064:569..727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.3e-15
Seed eggNOG ortholog112098.XP_008620778.1
Preferred nameUBE3A
KEGG koko:K10587,ko:K10614,ko:K10615
KEGG Pathwayko04120,ko05165,ko05203,map04120,map05165,map05203
GOsGO:0000003,GO:0000209,GO:0000902,GO:0000904,GO:0001541,GO:0001655,GO:0003006,GO:0003008,GO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0007154,GO:0007165,GO:0007275,GO:0007338,GO:0007399,GO:0007417,GO:0007420,GO:0007422,GO:0007548,GO:0007610,GO:0007611,GO:0007613,GO:0007616,GO:0007623,GO:0008150,GO:0008152,GO:0008406,GO:0008582,GO:0008585,GO:0009056,GO:0009057,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0010647,GO:0010648,GO:0010721,GO:0010769,GO:0010771,GO:0010975,GO:0010977,GO:0014066,GO:0014068,GO:0014070,GO:0016043,GO:0016192,GO:0016358,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022008,GO:0022414,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030154,GO:0030162,GO:0030163,GO:0030182,GO:0030510,GO:0030514,GO:0030518,GO:0030521,GO:0030522,GO:0030850,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031344,GO:0031345,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032570,GO:0032870,GO:0032989,GO:0032990,GO:0033993,GO:0035037,GO:0035265,GO:0036211,GO:0040007,GO:0040008,GO:0040011,GO:0042176,GO:0042221,GO:0042493,GO:0042752,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043401,GO:0043412,GO:0043632,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045137,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045886,GO:0045893,GO:0045926,GO:0045935,GO:0045944,GO:0046545,GO:0046660,GO:0048468,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048608,GO:0048638,GO:0048640,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048732,GO:0048812,GO:0048813,GO:0048814,GO:0048856,GO:0048858,GO:0048869,GO:0048934,GO:0048935,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050847,GO:0050877,GO:0050890,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051603,GO:0051704,GO:0051716,GO:0051865,GO:0051960,GO:0051961,GO:0051963,GO:0051964,GO:0060255,GO:0060284,GO:0060322,GO:0060736,GO:0060998,GO:0061000,GO:0061001,GO:0061002,GO:0061458,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0070647,GO:0070887,GO:0070936,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0071840,GO:0080090,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0098657,GO:0099175,GO:0120035,GO:0120036,GO:0120039,GO:0140096,GO:0140110,GO:1901564,GO:1901565,GO:1901575,GO:1901654,GO:1901700,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903320,GO:1903322,GO:1903362,GO:1903506,GO:1903508,GO:1904396,GO:1904397,GO:1905809,GO:2000026,GO:2000058,GO:2000112,GO:2000171,GO:2001141
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0941@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929592.368622-CDS-H-elongata_contig106064:568..7271622929592.368622-CDS-H-elongata_contig106064:568..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106064 569..727 +
1691679082.8701022-CDS-H-elongata_contig106064:568..7271691679082.8701022-CDS-H-elongata_contig106064:568..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106064 569..727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106064.490.1prot_H-elongata_contig106064.490.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106064 569..727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106064.490.1

>prot_H-elongata_contig106064.490.1 ID=prot_H-elongata_contig106064.490.1|Name=mRNA_H-elongata_contig106064.490.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
SLVISRNGGDSDRLPTAHTCFNHLLLPSYTTKEKLADRLKLAIEQSEGFG
LR*
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mRNA from alignment at H-elongata_contig106064:569..727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106064.490.1 ID=mRNA_H-elongata_contig106064.490.1|Name=mRNA_H-elongata_contig106064.490.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig106064:569..727+ (Himanthalia elongata Himel1 dioecious)
TCCCTCGTGATCTCCCGCAACGGAGGCGACTCGGATCGCCTGCCAACCGC
CCACACATGCTTCAACCACCTCTTGTTACCGTCATACACCACAAAGGAGA
AGCTAGCCGACCGCCTCAAGCTGGCCATCGAGCAATCCGAAGGCTTCGGT
CTTCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig106064:569..727+

>mRNA_H-elongata_contig106064.490.1 ID=mRNA_H-elongata_contig106064.490.1|Name=mRNA_H-elongata_contig106064.490.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig106064:569..727+ (Himanthalia elongata Himel1 dioecious)
TCCCTCGTGATCTCCCGCAACGGAGGCGACTCGGATCGCCTGCCAACCGC
CCACACATGCTTCAACCACCTCTTGTTACCGTCATACACCACAAAGGAGA
AGCTAGCCGACCGCCTCAAGCTGGCCATCGAGCAATCCGAAGGCTTCGGT
CTTCGGTGATCCCTCGTGATCTCCCGCAACGGAGGCGACTCGGATCGCCT
GCCAACCGCCCACACATGCTTCAACCACCTCTTGTTACCGTCATACACCA
CAAAGGAGAAGCTAGCCGACCGCCTCAAGCTGGCCATCGAGCAATCCGAA
GGCTTCGGTCTTCGGTGA
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