mRNA_H-elongata_contig106040.489.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106040.489.1
Unique NamemRNA_H-elongata_contig106040.489.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig106040.489.1 vs. uniprot
Match: D8LHF5_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF5_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 2.900e-53
Identity = 97/115 (84.35%), Postives = 103/115 (89.57%), Query Frame = 1
Query:    1 QVPLCEVAKQFFPDRNNIHGPDFEIKVKQGDH-HSRAQFFEAYSAKLNVSVVSIRGTDMGRISDLIEDIKIWVEPMVLEVLSMVFPTIRIWPDSTSSAVIEWLHETLQLFGLHQQ 342
            +VPL EVAKQFFP     HGPDF+IKVKQGD  HS AQFFEAYSAKLNVSVV+IRGTD+GRISDLIEDIKIWVEP+VL+ LSMVFPTIRIWPDSTSS VIEWLHETLQLFGL QQ
Sbjct:  704 KVPLSEVAKQFFPPGK--HGPDFKIKVKQGDDLHSHAQFFEAYSAKLNVSVVAIRGTDVGRISDLIEDIKIWVEPIVLKGLSMVFPTIRIWPDSTSSVVIEWLHETLQLFGLQQQ 816          
BLAST of mRNA_H-elongata_contig106040.489.1 vs. uniprot
Match: A0A7S3XTY2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTY2_HETAK)

HSP 1 Score: 110 bits (275), Expect = 8.110e-27
Identity = 53/99 (53.54%), Postives = 74/99 (74.75%), Query Frame = 1
Query:   46 NNIHG-PDFEIKVKQGD--HHSRAQFFEAYSAKLNVSVVSIRGTDMGRISDLIEDIKIWVEPMVLEVLSMVFPTIRIWPDSTSSAVIEWLHETLQLFGL 333
            +  HG P FE+++   +   H  A F E YSA LN+SVVS++GTD+GRISD +EDIK++ EP+V  +LS VFPT+R+W D+T+S +++WLHET  LFGL
Sbjct:   63 HTAHGAPLFELRLPPQEFLRHGDANFLEFYSASLNLSVVSVKGTDIGRISDFVEDIKLYTEPVVFMILSSVFPTVRMWSDNTASYMVDWLHETQVLFGL 161          
BLAST of mRNA_H-elongata_contig106040.489.1 vs. uniprot
Match: A0A835YVP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP4_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.200e-26
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 1
Query:  127 SAKLNVSVVSIRGTDMGRISDLIEDIKIWVEPMVLEVLSMVFPTIRIWPDSTSSAVIEWLHETLQLFGL 333
            S K NVS+V++RGTD+GR+ D IEDIKIWVEP+V  +LS +FPTIRIWPDST+SAVIEWLHETLQLFGL
Sbjct:  702 SRKGNVSIVAVRGTDIGRLGDFIEDIKIWVEPVVFMLLSTLFPTIRIWPDSTASAVIEWLHETLQLFGL 770          
BLAST of mRNA_H-elongata_contig106040.489.1 vs. uniprot
Match: A0A1V9ZID9_9STRA (Transmembrane protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZID9_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.230e-26
Identity = 53/106 (50.00%), Postives = 77/106 (72.64%), Query Frame = 1
Query:   31 FFPDRNNIHGPDFEIKVKQG--DHHSRAQFFEAYSAKLNVSVVSIRGTDMGRISDLIEDIKIWVEPMVLEVLSMVFPTIRIWPDSTSSAVIEWLHETLQLFGLHQQ 342
            F P ++N   P F++++      H S+ +FFEAYS+KLN+SV+S+RGTD+GR  DLIED+K++ EP++  ++S +FPTIRIWPD T S +IE  HE + LFGL  +
Sbjct: 1263 FPPTKDNK--PMFDVRIPDNYTQHGSKVEFFEAYSSKLNLSVISVRGTDVGRFRDLIEDVKMFAEPVIFAIISSIFPTIRIWPDVTFSTLIELYHEMMSLFGLSHE 1366          
BLAST of mRNA_H-elongata_contig106040.489.1 vs. uniprot
Match: A0A485KXN8_9STRA (Aste57867_12985 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXN8_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.430e-25
Identity = 52/94 (55.32%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   58 GPDFEIKVKQG--DHHSRAQFFEAYSAKLNVSVVSIRGTDMGRISDLIEDIKIWVEPMVLEVLSMVFPTIRIWPDSTSSAVIEWLHETLQLFGL 333
            GPDFEI++      H S+ +FFEAYS  LNVSV+S+RGTD+GR  D IED K++ EP++  +LS +FPTIR+WPD T S +IE  HE   +FGL
Sbjct:  551 GPDFEIRLPANYTAHGSKVEFFEAYSKALNVSVISVRGTDVGRFRDFIEDAKMYAEPVIFVILSSIFPTIRMWPDVTYSTLIELYHEIASMFGL 644          
BLAST of mRNA_H-elongata_contig106040.489.1 vs. uniprot
Match: A0A6G0XXD1_9STRA (Lipase_3 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXD1_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.710e-24
Identity = 48/97 (49.48%), Postives = 70/97 (72.16%), Query Frame = 1
Query:   49 NIHGPDFEIKVKQG--DHHSRAQFFEAYSAKLNVSVVSIRGTDMGRISDLIEDIKIWVEPMVLEVLSMVFPTIRIWPDSTSSAVIEWLHETLQLFGL 333
            ++  P+FEI++ +    H S+ +FFEAYS  LNVSV+++RGTD+GR  D +ED K++ EP++  +LS +FPTIR+WPD T S +IE  HE   +FGL
Sbjct:  546 SVSDPEFEIRLPENYTAHGSKVEFFEAYSRSLNVSVIAVRGTDVGRFRDFLEDAKMYAEPVIFVILSSIFPTIRMWPDVTFSTLIELYHEMASMFGL 642          
BLAST of mRNA_H-elongata_contig106040.489.1 vs. uniprot
Match: A0A067CKS2_SAPPC (Lipase_3 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKS2_SAPPC)

HSP 1 Score: 106 bits (265), Expect = 1.710e-24
Identity = 50/96 (52.08%), Postives = 70/96 (72.92%), Query Frame = 1
Query:   61 PDFEIKVKQG--DHHSRAQFFEAYSAKLNVSVVSIRGTDMGRISDLIEDIKIWVEPMVLEVLSMVFPTIRIWPDSTSSAVIEWLHETLQLFGLHQQ 342
            P F+I++        S+ +FFEAYSA LN+SV+S+RGTD+GR  DLIED+K++ EP++  +LS +FPTIR+WPD T S +IE  HE + LFGL  +
Sbjct:  558 PMFDIRIPDNYTAKGSKVEFFEAYSAALNLSVISVRGTDVGRFRDLIEDVKMFAEPVIFAILSSIFPTIRMWPDVTFSTLIELYHEMMSLFGLSHE 653          
BLAST of mRNA_H-elongata_contig106040.489.1 vs. uniprot
Match: A0A024UV21_9STRA (Lipase_3 domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UV21_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.340e-24
Identity = 50/99 (50.51%), Postives = 70/99 (70.71%), Query Frame = 1
Query:   43 RNNIHGPDFEIKVKQG--DHHSRAQFFEAYSAKLNVSVVSIRGTDMGRISDLIEDIKIWVEPMVLEVLSMVFPTIRIWPDSTSSAVIEWLHETLQLFGL 333
            R++   P F+I++ +    H S+ +FFEAYS  LNVSV+S+RGTD+GR  D IED K++ EP++  +LS +FPTIR+WPD T S +IE  HE   +FGL
Sbjct:  544 RSDTEDPRFDIRLPENYTAHSSKVEFFEAYSNDLNVSVISVRGTDVGRFRDFIEDAKMYAEPVIFVILSSIFPTIRMWPDVTFSTLIELYHELATMFGL 642          
BLAST of mRNA_H-elongata_contig106040.489.1 vs. uniprot
Match: A0A3R7XS02_9STRA (Lipase_3 domain-containing protein (Fragment) n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7XS02_9STRA)

HSP 1 Score: 105 bits (261), Expect = 5.880e-24
Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   10 LCEVAKQFFPDRNNIHGPDFEIKVKQG--DHHSRAQFFEAYSAKLNVSVVSIRGTDMGRISDLIEDIKIWVEPMVLEVLSMVFPTIRIWPDSTSSAVIEWLHETLQLFGL 333
            L +     FP  + +  P F+I++ +    H S+ +FFEAYS  LNVSV+S+RGTD+GR  D IED K++ EP++  +LS +FPTIR+WPD T S +IE  HE   +FGL
Sbjct:  484 LKDFVASVFPSASAL--PMFDIRLPENYTAHGSKVEFFEAYSKDLNVSVISVRGTDVGRFRDFIEDAKMYAEPVIFVILSSIFPTIRMWPDVTFSTLIELYHEMATMFGL 591          
BLAST of mRNA_H-elongata_contig106040.489.1 vs. uniprot
Match: W4H8U1_9STRA (Lipase_3 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8U1_9STRA)

HSP 1 Score: 105 bits (261), Expect = 5.920e-24
Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   10 LCEVAKQFFPDRNNIHGPDFEIKVKQG--DHHSRAQFFEAYSAKLNVSVVSIRGTDMGRISDLIEDIKIWVEPMVLEVLSMVFPTIRIWPDSTSSAVIEWLHETLQLFGL 333
            L +     FP  + +  P F+I++ +    H S+ +FFEAYS  LNVSV+S+RGTD+GR  D IED K++ EP++  +LS +FPTIR+WPD T S +IE  HE   +FGL
Sbjct:  535 LKDFVASVFPSASAL--PMFDIRLPENYTAHGSKVEFFEAYSKDLNVSVISVRGTDVGRFRDFIEDAKMYAEPVIFVILSSIFPTIRMWPDVTFSTLIELYHEMATMFGL 642          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106040.489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHF5_ECTSI2.900e-5384.35Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S3XTY2_HETAK8.110e-2753.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YVP4_9STRA1.200e-2676.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1V9ZID9_9STRA1.230e-2650.00Transmembrane protein (Fragment) n=1 Tax=Thraustot... [more]
A0A485KXN8_9STRA1.430e-2555.32Aste57867_12985 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XXD1_9STRA1.710e-2449.48Lipase_3 domain-containing protein n=1 Tax=Aphanom... [more]
A0A067CKS2_SAPPC1.710e-2452.08Lipase_3 domain-containing protein n=2 Tax=Saprole... [more]
A0A024UV21_9STRA2.340e-2450.51Lipase_3 domain-containing protein n=3 Tax=Aphanom... [more]
A0A3R7XS02_9STRA5.880e-2447.27Lipase_3 domain-containing protein (Fragment) n=10... [more]
W4H8U1_9STRA5.920e-2447.27Lipase_3 domain-containing protein n=2 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106040contigH-elongata_contig106040:560..2175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.3
Seed ortholog evalue1.9e-45
Seed eggNOG ortholog2880.D8LHF5
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K17900
KEGG ReactionR02250,R02687
KEGG Pathwayko00561,ko01100,ko04138,map00561,map01100,map04138
KEGG ModuleM00098
EggNOG free text desc.Lipase (class 3)
EggNOG OGs2DUDU@1,2QVZS@2759
EC3.1.1.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-11_004280.1
Exons3
Model size342
Cds size342
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106040.489.1prot_H-elongata_contig106040.489.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106040 560..2175 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929592.2889936-CDS-H-elongata_contig106040:559..6941622929592.2889936-CDS-H-elongata_contig106040:559..694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106040 560..694 -
1691679082.8321612-CDS-H-elongata_contig106040:559..6941691679082.8321612-CDS-H-elongata_contig106040:559..694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106040 560..694 -
1622929592.301544-CDS-H-elongata_contig106040:1400..15291622929592.301544-CDS-H-elongata_contig106040:1400..1529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106040 1401..1529 -
1691679082.8441339-CDS-H-elongata_contig106040:1400..15291691679082.8441339-CDS-H-elongata_contig106040:1400..1529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106040 1401..1529 -
1622929592.319647-CDS-H-elongata_contig106040:2097..21751622929592.319647-CDS-H-elongata_contig106040:2097..2175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106040 2098..2175 -
1691679082.8538463-CDS-H-elongata_contig106040:2097..21751691679082.8538463-CDS-H-elongata_contig106040:2097..2175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106040 2098..2175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106040.489.1

>prot_H-elongata_contig106040.489.1 ID=prot_H-elongata_contig106040.489.1|Name=mRNA_H-elongata_contig106040.489.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
QVPLCEVAKQFFPDRNNIHGPDFEIKVKQGDHHSRAQFFEAYSAKLNVSV
VSIRGTDMGRISDLIEDIKIWVEPMVLEVLSMVFPTIRIWPDSTSSAVIE
WLHETLQLFGLHQQ
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mRNA from alignment at H-elongata_contig106040:560..2175-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106040.489.1 ID=mRNA_H-elongata_contig106040.489.1|Name=mRNA_H-elongata_contig106040.489.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1616bp|location=Sequence derived from alignment at H-elongata_contig106040:560..2175- (Himanthalia elongata Himel1 dioecious)
CAGGTACCGCTGTGCGAGGTCGCCAAGCAGTTCTTTCCCGACAGAAACAA CATACATGGACCTGACTTCGAGATCAAGGTACCGCCTAAATCTCCCTCCC TCCATTTCTCTCTCTACCGTTCGCGTCTCAAACACCCCATAGCCCCCATA GCTCTGATAGCGTTCGGCTCGGTCGTCACCGATCCGGTTTGCCCCAGAGA TGTGATGAGGGCGTGTGGTCGCGATTTTCCGATCCCATCCCTGAGCCCGG CATGTCTCTGGTTTGGTCAGCGCACCGCTGCGTGTACGATGAACGCATGG ACGCGCATGATAGATTGGCGCCTGCCTCAACCATTGTCGTTTTCGTAGTT TAGGTGGGGCAACTGCTCTGTAACTGGAACTGTAAGGAGGAGGGAGTGTG CTTGCTGCAGTTGACGTTCTACACTATACAATATAGACTATACTGTAGCA GACTAGACAATACTGTAGCAGCTCAAGTGCCGGCCGTAAGAGTGAATAGG GTGTGCATCAAGGGTAAAAAAACATCCGAAACGATCGTCAACAATTCCTC TCCCCATGCAGTATTTATATGCATCTATCTATACATCTAAATCTCGCCAC GGCTACCAATGTCGACGCCACCGTCCACCGTCTCCTGTCGTCACAGGTGA AGCAGGGTGATCACCACAGCCGCGCGCAGTTTTTCGAGGCGTACTCGGCA AAGCTCAACGTGAGCGTTGTGTCCATCAGAGGTACCGACATGGGGCGCAT CTCGGACCTGATCGAGGACATTAAGGTGCCACGTTATGTACCTCGGGATA CTTGCACAACGAGCGCGGTGTGATGTGGTGTGGTGTGGTGCGATACGGTG CGATTTTGGGGTTGGGAAGCCAAAATATCAAAATATGGCGCTGTTGTGCG GGGATTGGGGTTTGGAAGGGGGGGGGGAGGGGGGTATCACATTATCGAAT GATATATACGGCTTGCCAAAAGTTTAATGTTTCTTTTTCCCTGCTTATCA TATACGAAGTATTAGCGGCTCGCCGATCGTGGGATACTGCCTAGCCCGAT AAAATATACCGTATAGCGCCTGGGATTCTTTTGCTGAATCCCACCGCAGT CGGAATTGTTTGTGGGAGGGTTAAGCTGTGCGGCAGTCGGGAAATCGTTG GCACCTCGTGTGCCCGGGTGTGGCAAATGTCATATGCCAAATCGTGAAGG CGCTGCTCTTGTTTGGGCTAGTAATAGAGCTAGAGCTACAGACAGGCCGC CATTTTTGCCATTTTGGAACTCAAAAAGCATTACTTTGGACTGAGCAAAA ATTAGCCTGACCTCTTCGCCGACGGGTCAACGTGCGAGGAACGAGCCAGG GGAGATCACGATCCTTGGCAACAGCACGAGCTGTAATAGAACCCACCCAC GGGTGGAGGGGAGCGAGGAAAAGCAGTCGAGAGTGCCAAGATTCACATCA GTCCCCGACCCCCCGCCTCCCCCCTCCTCAGATCTGGGTGGAGCCGATGG TGTTGGAGGTCCTTTCGATGGTGTTTCCGACGATCAGGATCTGGCCGGAC TCGACGTCGTCCGCGGTGATTGAGTGGCTCCACGAGACCCTGCAGCTGTT TGGTCTGCACCAGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig106040:560..2175-

>mRNA_H-elongata_contig106040.489.1 ID=mRNA_H-elongata_contig106040.489.1|Name=mRNA_H-elongata_contig106040.489.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig106040:560..2175- (Himanthalia elongata Himel1 dioecious)
CAGGTACCGCTGTGCGAGGTCGCCAAGCAGTTCTTTCCCGACAGAAACAA
CATACATGGACCTGACTTCGAGATCAAGCAGGTACCGCTGTGCGAGGTCG
CCAAGCAGTTCTTTCCCGACAGAAACAACATACATGGACCTGACTTCGAG
ATCAAGGTGAAGCAGGGTGATCACCACAGCCGCGCGCAGTTTTTCGAGGC
GTACTCGGCAAAGCTCAACGTGAGCGTTGTGTCCATCAGAGGTACCGACA
TGGGGCGCATCTCGGACCTGATCGAGGACATTAAGGTGAAGCAGGGTGAT
CACCACAGCCGCGCGCAGTTTTTCGAGGCGTACTCGGCAAAGCTCAACGT
GAGCGTTGTGTCCATCAGAGGTACCGACATGGGGCGCATCTCGGACCTGA
TCGAGGACATTAAGATCTGGGTGGAGCCGATGGTGTTGGAGGTCCTTTCG
ATGGTGTTTCCGACGATCAGGATCTGGCCGGACTCGACGTCGTCCGCGGT
GATTGAGTGGCTCCACGAGACCCTGCAGCTGTTTGGTCTGCACCAGCAGA
TCTGGGTGGAGCCGATGGTGTTGGAGGTCCTTTCGATGGTGTTTCCGACG
ATCAGGATCTGGCCGGACTCGACGTCGTCCGCGGTGATTGAGTGGCTCCA
CGAGACCCTGCAGCTGTTTGGTCTGCACCAGCAG
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