mRNA_H-elongata_contig105991.486.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105991.486.1
Unique NamemRNA_H-elongata_contig105991.486.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: D7FJL3_ECTSI (Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL3_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 3.070e-37
Identity = 65/86 (75.58%), Postives = 75/86 (87.21%), Query Frame = 1
Query:    4 VATGTANVHGPGTSRVMWCDSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
            V     +VHGPGTSRV WCD+SVYM+TTGMSK+TRERE AVWD+RS+SAPVSR+ +GGTSSGFLLP LQ+ LGL+ LCGRGDSTVR
Sbjct:  146 VVAKAQDVHGPGTSRVTWCDNSVYMLTTGMSKLTREREFAVWDARSMSAPVSRTRVGGTSSGFLLPRLQYGLGLVTLCGRGDSTVR 231          
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: A0A5K1VI49_ENTHI (Coronin n=7 Tax=Entamoeba histolytica TaxID=5759 RepID=A0A5K1VI49_ENTHI)

HSP 1 Score: 58.9 bits (141), Expect = 3.390e-8
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   46 RVMWCDSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTV 258
            R +W  ++  ++TTG S+ + ERE+A+WD RSL +P+ R H     SG L+P    +L L+ L G+GDST+
Sbjct:  221 RCLWMQNNDMIVTTGFSR-SAEREIALWDPRSLESPLCR-HTVDNQSGVLMPFYDPDLSLLYLGGKGDSTI 289          
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: A0A507BW04_9FUNG (Coronin n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BW04_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 8.650e-8
Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 1
Query:    7 ATGTANVHGPGTSRVMWCDSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
            A G   V G   SR+ W  S+  ++TTG SK T +R++ +WD++S++ PV +  I  T+SG L+P       ++ L G+GD  +R
Sbjct:  211 AKGHEGVKG---SRITWLGSTDKLVTTGFSK-TSDRQVFIWDNKSMAEPVKQESID-TASGMLMPYFDEGTNMLYLAGKGDGNIR 290          
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: UPI001B7EB7D7 (coronin-1A-like n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7EB7D7)

HSP 1 Score: 57.4 bits (137), Expect = 9.530e-8
Identity = 27/62 (43.55%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   76 MITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
            ++TTG S+++ ER++A+WD +SL  P++   +  TSSG LLP    + G++ LCG+GDS++R
Sbjct:   61 ILTTGFSRMS-ERQVALWDPKSLEEPLTLQELD-TSSGVLLPFFDPDTGIVYLCGKGDSSIR 120          
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: A0A139AEG6_GONPJ (Coronin n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AEG6_GONPJ)

HSP 1 Score: 57.4 bits (137), Expect = 1.180e-7
Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    1 RVATGTANVHGPGTSRVMWCDSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
            +VA   +   G   SRV+W   S  ++TTG S+ + +R++ VWD+RSL+ P+   +I  TSSG L+P    +  ++ L G+GD  +R
Sbjct:  207 KVAGEVSGHQGIKGSRVVWMGESSKVLTTGFSRQS-DRQVYVWDTRSLTKPLREENID-TSSGTLIPYYDGDTKMVYLAGKGDGNIR 291          
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: A0A0D2X5A5_CAPO3 (Coronin n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X5A5_CAPO3)

HSP 1 Score: 57.4 bits (137), Expect = 1.230e-7
Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 RVATGTANVH---GPGTSRVMWCDSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
            R A+  A V    G  T RV W      ++TTG SK +RER+  VWD+R+L+ P+    +  +S+G L+P    +  +++L G+GDST+R
Sbjct:  201 RSASAVAGVEAHAGTKTIRVAWAGHLDRILTTGFSK-SRERQYCVWDARNLAKPL-HLQVLDSSTGVLIPMYDEDTNVVVLAGKGDSTLR 288          
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: A0A177UAE6_9BASI (DUF1899 domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177UAE6_9BASI)

HSP 1 Score: 56.6 bits (135), Expect = 2.250e-7
Identity = 32/87 (36.78%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    1 RVATGTANVHGPGTSRVMWCDSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
            +V  G   + G   SR +WC S   +ITTG SK++ +R++ +WDS++LSAP+ +S +  +SSG ++P    +  ++ L G+GD  +R
Sbjct:  224 QVVDGHGGIKG---SRAVWCGSLDRIITTGFSKMS-DRQMFLWDSKNLSAPL-KSIVLDSSSGVVMP-FWSDNNIVFLAGKGDGNIR 304          
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: A0A507EIM3_9FUNG (Uncharacterized protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507EIM3_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 3.150e-7
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   31 GPGTSRVMWCDSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
            G   S + W + +  ++T G SK+ R+RELA+WDSRS++ PV    +  TS+G L+P    + GL+ + G+GDS +R
Sbjct:  193 GVKASSIHWINDTA-LLTAGFSKM-RDRELALWDSRSMAKPVVNYKLD-TSTGRLIPLFDPDSGLLFVTGKGDSAIR 266          
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: A0A3P6TM06_LITSI (Coronin n=1 Tax=Litomosoides sigmodontis TaxID=42156 RepID=A0A3P6TM06_LITSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.080e-6
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   61 DSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
            D+S  +ITTG S+ TR R+LA++ SR L AP++   I G  SGFL+P +  +L L+ + G+GD+ +R
Sbjct:  224 DNSERLITTGSSRSTR-RQLALYSSRPLDAPLAVVDIDG-GSGFLMPIVDNDLNLLYIAGKGDANIR 288          
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: Q6P9I1_XENLA (Coronin n=4 Tax=Xenopus TaxID=8353 RepID=Q6P9I1_XENLA)

HSP 1 Score: 54.3 bits (129), Expect = 1.440e-6
Identity = 26/66 (39.39%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   64 SSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
            S   ++TTG S+++ ER++A+WD +SL+ P++   +  TSSG L+P    +  ++ LCG+GDS++R
Sbjct:  229 SDEQILTTGFSRMS-ERQVALWDLKSLNEPLTLQELD-TSSGVLIPFFDPDTNVVYLCGKGDSSIR 292          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJL3_ECTSI3.070e-3775.58Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL3... [more]
A0A5K1VI49_ENTHI3.390e-842.25Coronin n=7 Tax=Entamoeba histolytica TaxID=5759 R... [more]
A0A507BW04_9FUNG8.650e-836.47Coronin n=1 Tax=Synchytrium microbalum TaxID=18069... [more]
UPI001B7EB7D79.530e-843.55coronin-1A-like n=1 Tax=Polyodon spathula TaxID=79... [more]
A0A139AEG6_GONPJ1.180e-736.78Coronin n=1 Tax=Gonapodya prolifera (strain JEL478... [more]
A0A0D2X5A5_CAPO31.230e-737.78Coronin n=1 Tax=Capsaspora owczarzaki (strain ATCC... [more]
A0A177UAE6_9BASI2.250e-736.78DUF1899 domain-containing protein n=2 Tax=Tilletia... [more]
A0A507EIM3_9FUNG3.150e-740.26Uncharacterized protein n=2 Tax=Chytriomyces confe... [more]
A0A3P6TM06_LITSI1.080e-644.78Coronin n=1 Tax=Litomosoides sigmodontis TaxID=421... [more]
Q6P9I1_XENLA1.440e-639.39Coronin n=4 Tax=Xenopus TaxID=8353 RepID=Q6P9I1_XE... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105991contigH-elongata_contig105991:854..1114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.4e-32
Seed eggNOG ortholog2880.D7FJL3
KEGG koko:K13886,ko:K18619
EggNOG free text desc.actin filament binding
EggNOG OGsCOG1985@1,KOG0303@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929592.0743864-CDS-H-elongata_contig105991:853..11141622929592.0743864-CDS-H-elongata_contig105991:853..1114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105991 854..1114 +
1691679082.7017634-CDS-H-elongata_contig105991:853..11141691679082.7017634-CDS-H-elongata_contig105991:853..1114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105991 854..1114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105991.486.1prot_H-elongata_contig105991.486.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105991 854..1114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105991.486.1

>prot_H-elongata_contig105991.486.1 ID=prot_H-elongata_contig105991.486.1|Name=mRNA_H-elongata_contig105991.486.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
RVATGTANVHGPGTSRVMWCDSSVYMITTGMSKITRERELAVWDSRSLSA
PVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR
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mRNA from alignment at H-elongata_contig105991:854..1114+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105991.486.1 ID=mRNA_H-elongata_contig105991.486.1|Name=mRNA_H-elongata_contig105991.486.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig105991:854..1114+ (Himanthalia elongata Himel1 dioecious)
CGGGTCGCCACCGGAACAGCAAACGTGCATGGGCCGGGCACATCCAGGGT CATGTGGTGTGACAGTAGCGTTTACATGATCACGACGGGCATGTCGAAGA TAACAAGAGAGCGGGAGTTGGCCGTATGGGACTCGCGGTCGCTGTCTGCC CCAGTAAGCCGGTCGCACATTGGAGGGACGTCCTCCGGCTTCCTCTTACC GAATCTCCAGTTTGAACTTGGCCTCATCATGCTGTGCGGCAGAGGCGACT CCACCGTGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig105991:854..1114+

>mRNA_H-elongata_contig105991.486.1 ID=mRNA_H-elongata_contig105991.486.1|Name=mRNA_H-elongata_contig105991.486.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig105991:854..1114+ (Himanthalia elongata Himel1 dioecious)
CGGGTCGCCACCGGAACAGCAAACGTGCATGGGCCGGGCACATCCAGGGT
CATGTGGTGTGACAGTAGCGTTTACATGATCACGACGGGCATGTCGAAGA
TAACAAGAGAGCGGGAGTTGGCCGTATGGGACTCGCGGTCGCTGTCTGCC
CCAGTAAGCCGGTCGCACATTGGAGGGACGTCCTCCGGCTTCCTCTTACC
GAATCTCCAGTTTGAACTTGGCCTCATCATGCTGTGCGGCAGAGGCGACT
CCACCGTGAGGCGGGTCGCCACCGGAACAGCAAACGTGCATGGGCCGGGC
ACATCCAGGGTCATGTGGTGTGACAGTAGCGTTTACATGATCACGACGGG
CATGTCGAAGATAACAAGAGAGCGGGAGTTGGCCGTATGGGACTCGCGGT
CGCTGTCTGCCCCAGTAAGCCGGTCGCACATTGGAGGGACGTCCTCCGGC
TTCCTCTTACCGAATCTCCAGTTTGAACTTGGCCTCATCATGCTGTGCGG
CAGAGGCGACTCCACCGTGAGG
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