mRNA_H-elongata_contig105991.486.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: D7FJL3_ECTSI (Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL3_ECTSI) HSP 1 Score: 141 bits (356), Expect = 3.070e-37 Identity = 65/86 (75.58%), Postives = 75/86 (87.21%), Query Frame = 1
Query: 4 VATGTANVHGPGTSRVMWCDSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
V +VHGPGTSRV WCD+SVYM+TTGMSK+TRERE AVWD+RS+SAPVSR+ +GGTSSGFLLP LQ+ LGL+ LCGRGDSTVR
Sbjct: 146 VVAKAQDVHGPGTSRVTWCDNSVYMLTTGMSKLTREREFAVWDARSMSAPVSRTRVGGTSSGFLLPRLQYGLGLVTLCGRGDSTVR 231
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: A0A5K1VI49_ENTHI (Coronin n=7 Tax=Entamoeba histolytica TaxID=5759 RepID=A0A5K1VI49_ENTHI) HSP 1 Score: 58.9 bits (141), Expect = 3.390e-8 Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 1
Query: 46 RVMWCDSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTV 258
R +W ++ ++TTG S+ + ERE+A+WD RSL +P+ R H SG L+P +L L+ L G+GDST+
Sbjct: 221 RCLWMQNNDMIVTTGFSR-SAEREIALWDPRSLESPLCR-HTVDNQSGVLMPFYDPDLSLLYLGGKGDSTI 289
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: A0A507BW04_9FUNG (Coronin n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BW04_9FUNG) HSP 1 Score: 57.8 bits (138), Expect = 8.650e-8 Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 1
Query: 7 ATGTANVHGPGTSRVMWCDSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
A G V G SR+ W S+ ++TTG SK T +R++ +WD++S++ PV + I T+SG L+P ++ L G+GD +R
Sbjct: 211 AKGHEGVKG---SRITWLGSTDKLVTTGFSK-TSDRQVFIWDNKSMAEPVKQESID-TASGMLMPYFDEGTNMLYLAGKGDGNIR 290
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: UPI001B7EB7D7 (coronin-1A-like n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7EB7D7) HSP 1 Score: 57.4 bits (137), Expect = 9.530e-8 Identity = 27/62 (43.55%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 76 MITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
++TTG S+++ ER++A+WD +SL P++ + TSSG LLP + G++ LCG+GDS++R
Sbjct: 61 ILTTGFSRMS-ERQVALWDPKSLEEPLTLQELD-TSSGVLLPFFDPDTGIVYLCGKGDSSIR 120
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: A0A139AEG6_GONPJ (Coronin n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AEG6_GONPJ) HSP 1 Score: 57.4 bits (137), Expect = 1.180e-7 Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 1
Query: 1 RVATGTANVHGPGTSRVMWCDSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
+VA + G SRV+W S ++TTG S+ + +R++ VWD+RSL+ P+ +I TSSG L+P + ++ L G+GD +R
Sbjct: 207 KVAGEVSGHQGIKGSRVVWMGESSKVLTTGFSRQS-DRQVYVWDTRSLTKPLREENID-TSSGTLIPYYDGDTKMVYLAGKGDGNIR 291
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: A0A0D2X5A5_CAPO3 (Coronin n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X5A5_CAPO3) HSP 1 Score: 57.4 bits (137), Expect = 1.230e-7 Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 1
Query: 1 RVATGTANVH---GPGTSRVMWCDSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
R A+ A V G T RV W ++TTG SK +RER+ VWD+R+L+ P+ + +S+G L+P + +++L G+GDST+R
Sbjct: 201 RSASAVAGVEAHAGTKTIRVAWAGHLDRILTTGFSK-SRERQYCVWDARNLAKPL-HLQVLDSSTGVLIPMYDEDTNVVVLAGKGDSTLR 288
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: A0A177UAE6_9BASI (DUF1899 domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177UAE6_9BASI) HSP 1 Score: 56.6 bits (135), Expect = 2.250e-7 Identity = 32/87 (36.78%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 1 RVATGTANVHGPGTSRVMWCDSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
+V G + G SR +WC S +ITTG SK++ +R++ +WDS++LSAP+ +S + +SSG ++P + ++ L G+GD +R
Sbjct: 224 QVVDGHGGIKG---SRAVWCGSLDRIITTGFSKMS-DRQMFLWDSKNLSAPL-KSIVLDSSSGVVMP-FWSDNNIVFLAGKGDGNIR 304
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: A0A507EIM3_9FUNG (Uncharacterized protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507EIM3_9FUNG) HSP 1 Score: 56.2 bits (134), Expect = 3.150e-7 Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 31 GPGTSRVMWCDSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
G S + W + + ++T G SK+ R+RELA+WDSRS++ PV + TS+G L+P + GL+ + G+GDS +R
Sbjct: 193 GVKASSIHWINDTA-LLTAGFSKM-RDRELALWDSRSMAKPVVNYKLD-TSTGRLIPLFDPDSGLLFVTGKGDSAIR 266
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: A0A3P6TM06_LITSI (Coronin n=1 Tax=Litomosoides sigmodontis TaxID=42156 RepID=A0A3P6TM06_LITSI) HSP 1 Score: 54.7 bits (130), Expect = 1.080e-6 Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 61 DSSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
D+S +ITTG S+ TR R+LA++ SR L AP++ I G SGFL+P + +L L+ + G+GD+ +R
Sbjct: 224 DNSERLITTGSSRSTR-RQLALYSSRPLDAPLAVVDIDG-GSGFLMPIVDNDLNLLYIAGKGDANIR 288
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Match: Q6P9I1_XENLA (Coronin n=4 Tax=Xenopus TaxID=8353 RepID=Q6P9I1_XENLA) HSP 1 Score: 54.3 bits (129), Expect = 1.440e-6 Identity = 26/66 (39.39%), Postives = 46/66 (69.70%), Query Frame = 1
Query: 64 SSVYMITTGMSKITRERELAVWDSRSLSAPVSRSHIGGTSSGFLLPNLQFELGLIMLCGRGDSTVR 261
S ++TTG S+++ ER++A+WD +SL+ P++ + TSSG L+P + ++ LCG+GDS++R
Sbjct: 229 SDEQILTTGFSRMS-ERQVALWDLKSLNEPLTLQELD-TSSGVLIPFFDPDTNVVYLCGKGDSSIR 292 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105991.486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig105991.486.1 >prot_H-elongata_contig105991.486.1 ID=prot_H-elongata_contig105991.486.1|Name=mRNA_H-elongata_contig105991.486.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp RVATGTANVHGPGTSRVMWCDSSVYMITTGMSKITRERELAVWDSRSLSAback to top mRNA from alignment at H-elongata_contig105991:854..1114+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig105991.486.1 ID=mRNA_H-elongata_contig105991.486.1|Name=mRNA_H-elongata_contig105991.486.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig105991:854..1114+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig105991:854..1114+ >mRNA_H-elongata_contig105991.486.1 ID=mRNA_H-elongata_contig105991.486.1|Name=mRNA_H-elongata_contig105991.486.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig105991:854..1114+ (Himanthalia elongata Himel1 dioecious)back to top |