mRNA_H-elongata_contig105946.482.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105946.482.1
Unique NamemRNA_H-elongata_contig105946.482.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig105946.482.1 vs. uniprot
Match: A0A6H5KU51_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU51_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.130e-32
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    1 FHDDLLISEPEIVETDIDEADQFLLMACDGLWGVLGKAEAVGSVKTMFTEGFCAQAMSERMCELAHDRGSTDNVTVVLIQFHHYRP 258
            FHDDLL +EPE  E +I   D+FLLMACDGLW VLGK EAV   K  F EG C+QA++ERMCELA+  G++DNVTVV++QFHH+RP
Sbjct:  296 FHDDLLTAEPEFQEAEIGLDDEFLLMACDGLWDVLGKREAVDYAKNFFDEGMCSQAVAERMCELAYRMGTSDNVTVVIVQFHHFRP 381          
BLAST of mRNA_H-elongata_contig105946.482.1 vs. uniprot
Match: A0A835ZH46_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH46_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.190e-23
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 FHDDLLISEPEIVETDIDEADQFLLMACDGLWGVLGKAEAVGSVKTMFTEGFCAQAMSERMCELAHDRGSTDNVTVVLIQFHHYRP 258
            F+DDLL++ P+  E +I + DQFLL+ACDGLW VL   +AV     +  +G CAQ  ++++CELA   G++DNVTV+++  HH+ P
Sbjct:   72 FYDDLLVAHPDFHEEEITDEDQFLLLACDGLWDVLSHGDAVKHTLELLDQGLCAQGAAQQLCELATRLGTSDNVTVIIVSLHHHPP 157          
BLAST of mRNA_H-elongata_contig105946.482.1 vs. uniprot
Match: A0A812TH32_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TH32_SYMMI)

HSP 1 Score: 83.6 bits (205), Expect = 7.460e-19
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 FHDDLLISEPEIVETDIDEADQFLLMACDGLWGVLGKAEAVGSVKTMFTEGFCAQAMSERMCELAHDRGSTDNVTVVLIQFHHYR 255
            F  DL+I +PE +  ++   D+FL++A DGLW V+ K EAV  V+  F EG   + +S  +CELA   GS+DNVTVV++QF H R
Sbjct:   35 FMADLIIPDPECISVELQPCDEFLILASDGLWDVVSKPEAVRRVRASFDEGKPPETVSHDLCELAIRLGSSDNVTVVVVQFVHMR 119          
BLAST of mRNA_H-elongata_contig105946.482.1 vs. uniprot
Match: A0A7S1VL20_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1VL20_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 1.060e-13
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    1 FHDDLLISEPEIVETDIDEADQFLLMACDGLWGVLGKAEAVGSVKTMFTEGFCAQA-MSERMCELAHDRGSTDNVTVVLIQFHHYRP 258
            F  +++I+EPE+ ET + + D+FL+MACDGLW V    EAV  V     E   A+A + E++   A  RGS DNV+VVL+ F H +P
Sbjct:  636 FTGEVVIAEPEVTETTLRKGDEFLIMACDGLWDVFSSEEAVTWVSERLQESTLARAFLGEQLVAEAIRRGSLDNVSVVLLFFDHEKP 722          
BLAST of mRNA_H-elongata_contig105946.482.1 vs. uniprot
Match: A0A8J5QJA4_9ASCO (MgPP2CL-1 n=1 Tax=[Candida] subhashii TaxID=561895 RepID=A0A8J5QJA4_9ASCO)

HSP 1 Score: 73.2 bits (178), Expect = 2.950e-13
Identity = 28/78 (35.90%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   10 DLLISEPEIVETDIDEADQFLLMACDGLWGVLGKAEAVGSVKTMFTEGFCAQAMSERMCELAHDRGSTDNVTVVLIQF 243
            DL+I +P    T++   D+++++ACDG+W V+  ++A   V  +F++G+ A   ++++C+LA D  +TDNVTV++++F
Sbjct:  289 DLVIGKPFTTATEVTPDDEYIILACDGVWDVISDSKACSLVTELFSKGYDAHGAAKKLCQLAMDNSTTDNVTVMIVKF 366          
BLAST of mRNA_H-elongata_contig105946.482.1 vs. uniprot
Match: A0A642UVD8_DIURU (PPM-type phosphatase domain-containing protein n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642UVD8_DIURU)

HSP 1 Score: 72.0 bits (175), Expect = 5.500e-13
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   10 DLLISEPEIVETDIDEADQFLLMACDGLWGVLGKAEAVGSVKTMFTEGFCAQAMSERMCELAHDRGSTDNVTVVLIQF 243
            DL+I +P   +T I + D+F+++ACDG+W V+  ++A   V   F E    Q +++R+C+LA D  +TDNVTV++++F
Sbjct:  219 DLVIGKPFTTQTTITDEDEFMIIACDGVWDVISDSKACQFVVDQFAEQLDVQTVAKRLCQLAMDLSTTDNVTVMVVKF 296          
BLAST of mRNA_H-elongata_contig105946.482.1 vs. uniprot
Match: H8X5D0_CANO9 (Ptc1 protein phosphatase n=1 Tax=Candida orthopsilosis (strain 90-125) TaxID=1136231 RepID=H8X5D0_CANO9)

HSP 1 Score: 72.0 bits (175), Expect = 8.870e-13
Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   10 DLLISEPEIVETDIDEADQFLLMACDGLWGVLGKAEAVGSVKTMFTEGFCAQAMSERMCELAHDRGSTDNVTVVLIQF 243
            DL++ +P    T I + D+F+++ACDG+W V+   +A   V   F +G  AQ  S+++C+LA D  +TDNVTV+++QF
Sbjct:  369 DLVLGKPFTTSTQIIKDDEFMIIACDGVWDVISDTKACKIVADCFKKGLDAQEASKKLCQLAIDASTTDNVTVMVVQF 446          
BLAST of mRNA_H-elongata_contig105946.482.1 vs. uniprot
Match: G8BFU6_CANPC (PPM-type phosphatase domain-containing protein n=1 Tax=Candida parapsilosis (strain CDC 317 / ATCC MYA-4646) TaxID=578454 RepID=G8BFU6_CANPC)

HSP 1 Score: 71.6 bits (174), Expect = 1.210e-12
Identity = 29/81 (35.80%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   10 DLLISEPEIVETDIDEADQFLLMACDGLWGVLGKAEAVGSVKTMFTEGFCAQAMSERMCELAHDRGSTDNVTVVLIQFHHY 252
            DL++ +P    T I + D+F+++ACDG+W V+  A+A   V   F  G  AQ  ++++C++A + G+TDN+T ++++F H+
Sbjct:  371 DLVLGKPFTTSTQIIKDDEFMIIACDGVWDVISDAKACKIVADCFKNGMDAQEAAKKLCQMAINDGTTDNITCMVVKFRHF 451          
BLAST of mRNA_H-elongata_contig105946.482.1 vs. uniprot
Match: A0A8H7ZHC6_9ASCO (MgPP2CL-1 n=1 Tax=Candida metapsilosis TaxID=273372 RepID=A0A8H7ZHC6_9ASCO)

HSP 1 Score: 71.2 bits (173), Expect = 1.620e-12
Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   10 DLLISEPEIVETDIDEADQFLLMACDGLWGVLGKAEAVGSVKTMFTEGFCAQAMSERMCELAHDRGSTDNVTVVLIQF 243
            DL++ +P    T I + D+F+++ACDG+W V+   +A   V   F  G+ AQ  S+++C+LA +  +TDNVTV+++QF
Sbjct:  344 DLVLGKPFTTSTQIIKDDEFMIIACDGVWDVISDTKACRIVADCFERGYDAQEASKKLCQLAIEASTTDNVTVMVVQF 421          
BLAST of mRNA_H-elongata_contig105946.482.1 vs. uniprot
Match: M2W265_GALSU (Protein phosphatase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W265_GALSU)

HSP 1 Score: 70.5 bits (171), Expect = 1.970e-12
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   13 LLISEPEIVETDIDEADQFLLMACDGLWGVLGKAEAVGSVKTMFTEGFCAQAMSERMCELAHDRGSTDNVTVVLI 237
            ++I EP +    +   D+FL++ACDGLW V+   E V  V+ +   G   Q++SER+  LA DRGSTDN++V++I
Sbjct:  228 VVIGEPHVTSETLTADDKFLILACDGLWDVVEDQEVVNFVQHLHVNGLDVQSISERLVRLALDRGSTDNISVMVI 302          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105946.482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU51_9PHAE6.130e-3265.12PPM-type phosphatase domain-containing protein n=1... [more]
A0A835ZH46_9STRA5.190e-2346.51Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A812TH32_SYMMI7.460e-1947.06Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A7S1VL20_9EUKA1.060e-1344.83Hypothetical protein (Fragment) n=1 Tax=Sexangular... [more]
A0A8J5QJA4_9ASCO2.950e-1335.90MgPP2CL-1 n=1 Tax=[Candida] subhashii TaxID=561895... [more]
A0A642UVD8_DIURU5.500e-1339.74PPM-type phosphatase domain-containing protein n=1... [more]
H8X5D0_CANO98.870e-1341.03Ptc1 protein phosphatase n=1 Tax=Candida orthopsil... [more]
G8BFU6_CANPC1.210e-1235.80PPM-type phosphatase domain-containing protein n=1... [more]
A0A8H7ZHC6_9ASCO1.620e-1239.74MgPP2CL-1 n=1 Tax=Candida metapsilosis TaxID=27337... [more]
M2W265_GALSU1.970e-1242.67Protein phosphatase n=1 Tax=Galdieria sulphuraria ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105946contigH-elongata_contig105946:1516..2211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue5.4e-11
Seed eggNOG ortholog164328.Phyra96836
KEGG koko:K17501
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGs3QDY0@4776,COG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929591.3606117-CDS-H-elongata_contig105946:1515..16321622929591.3606117-CDS-H-elongata_contig105946:1515..1632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105946 1516..1632 -
1691679082.417343-CDS-H-elongata_contig105946:1515..16321691679082.417343-CDS-H-elongata_contig105946:1515..1632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105946 1516..1632 -
1622929591.386395-CDS-H-elongata_contig105946:2061..22111622929591.386395-CDS-H-elongata_contig105946:2061..2211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105946 2062..2211 -
1691679082.4285746-CDS-H-elongata_contig105946:2061..22111691679082.4285746-CDS-H-elongata_contig105946:2061..2211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105946 2062..2211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105946.482.1prot_H-elongata_contig105946.482.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105946 1516..2211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105946.482.1

>prot_H-elongata_contig105946.482.1 ID=prot_H-elongata_contig105946.482.1|Name=mRNA_H-elongata_contig105946.482.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
FHDDLLISEPEIVETDIDEADQFLLMACDGLWGVLGKAEAVGSVKTMFTE
GFCAQAMSERMCELAHDRGSTDNVTVVLIQFHHYRPPC*
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mRNA from alignment at H-elongata_contig105946:1516..2211-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105946.482.1 ID=mRNA_H-elongata_contig105946.482.1|Name=mRNA_H-elongata_contig105946.482.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=696bp|location=Sequence derived from alignment at H-elongata_contig105946:1516..2211- (Himanthalia elongata Himel1 dioecious)
TTCCACGACGACCTGCTGATCTCGGAACCTGAAATTGTCGAAACCGATAT AGACGAAGCCGATCAATTCCTCCTCATGGCATGCGACGGGTTGTGGGGCG TCCTCGGCAAGGCCGAGGCCGTGGGAAGTGTGAAAACCATGTTCACCGAG GTGCGTCGTCCGATTCGATTCCTGATTTCTTCTCATCTTTTTGTTGTTGT TGTATAAAGCAGTGGACTGTGGTATTTATTTATTTATTTCTCCATGGCTT CTCCGCCATTGACGATAAGCGAAAGACTAGACCAGTTTCAGACTCTTTTC CGCAGGATACATCTAGACTGTTCTTTTCGAGCGGCGAGCGCTTAACCAGT ATTGCACTGAACAAGAAAAATGCTGCCACGGGATCCATGAAACCCCGATC ACCCCCCGCCTTCTTTGTGAAATGCCTTGTTTTTTGTGTGGCTTGTAGGA AGTGATATGGTAAGAGGACTACTCTGACATCATGAAATATTGTCTATTTA AAACAAAATATATAGAATCCACTGTTCTTTTCCAGCTCCTCGTTCCAATC ACCACCGCCACCTCGCAATGAACTTGCAGGGGTTCTGTGCACAGGCGATG TCAGAGCGTATGTGCGAGCTCGCCCATGACAGGGGATCAACGGACAACGT AACGGTCGTATTAATCCAATTTCACCACTATCGACCACCTTGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig105946:1516..2211-

>mRNA_H-elongata_contig105946.482.1 ID=mRNA_H-elongata_contig105946.482.1|Name=mRNA_H-elongata_contig105946.482.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig105946:1516..2211- (Himanthalia elongata Himel1 dioecious)
TTCCACGACGACCTGCTGATCTCGGAACCTGAAATTGTCGAAACCGATAT
AGACGAAGCCGATCAATTCCTCCTCATGGCATGCGACGGGTTGTGGGGCG
TCCTCGGCAAGGCCGAGGCCGTGGGAAGTGTGAAAACCATGTTCACCGAG
TTCCACGACGACCTGCTGATCTCGGAACCTGAAATTGTCGAAACCGATAT
AGACGAAGCCGATCAATTCCTCCTCATGGCATGCGACGGGTTGTGGGGCG
TCCTCGGCAAGGCCGAGGCCGTGGGAAGTGTGAAAACCATGTTCACCGAG
GGGTTCTGTGCACAGGCGATGTCAGAGCGTATGTGCGAGCTCGCCCATGA
CAGGGGATCAACGGACAACGTAACGGTCGTATTAATCCAATTTCACCACT
ATCGACCACCTTGTTGAGGGTTCTGTGCACAGGCGATGTCAGAGCGTATG
TGCGAGCTCGCCCATGACAGGGGATCAACGGACAACGTAACGGTCGTATT
AATCCAATTTCACCACTATCGACCACCTTGTTGA
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