mRNA_H-elongata_contig105902.481.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig105902.481.1 vs. uniprot
Match: D8LFI3_ECTSI (CobW C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFI3_ECTSI) HSP 1 Score: 160 bits (404), Expect = 5.010e-42 Identity = 130/267 (48.69%), Postives = 152/267 (56.93%), Query Frame = 1
Query: 1 LTQILTALNPHARLIGCTYGNVGLQADVLGVMDGRGVADSGSIDDHKDAVSALEATEDRAAASHD----------------------------SDGCTHTGDEGGATATVASSDHECDGHDHGRSLEAGQEGYDSNCAQCSEGGHEXXXXXXXXXXXXXXXXXKEMGEGTTTAAKRFGIDNFVYRQRRPFHPERLGRVLKSMPTPTNLALSQ-AAGGDTAAADAVTETSGEGGDKALLKAFGRLVRSKGFMWLAFSDNAAMYWSHAG 714
+ +IL ALNPHAR+IGCTYGNVG+ DVLGVMDG+GVADSG+IDDHKD+++ALE + A GC H XXXXXXXXXXXXXXXXXK +G+GTTTAAKRFGIDNFVYRQRRPF+PERL +LKSMP+ +NLAL A+G D +A A +S +AL A ++VRSKGFMWLAFSD AAMYWSHAG
Sbjct: 237 MQKILMALNPHARVIGCTYGNVGIH-DVLGVMDGQGVADSGTIDDHKDSMTALENNAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPESGCGSXXXXXXXXXXXXXXXXXXXXXGHSXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXKAIGDGTTTAAKRFGIDNFVYRQRRPFNPERLAELLKSMPSSSNLALKGVASGADDSAKAADGASSSTSDSEALRMALRKVVRSKGFMWLAFSDKAAMYWSHAG 499
BLAST of mRNA_H-elongata_contig105902.481.1 vs. uniprot
Match: A0A7S2Y1P1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P1_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.350e-18 Identity = 105/273 (38.46%), Postives = 126/273 (46.15%), Query Frame = 1
Query: 1 LTQILTALNPHARLIGCTYGNVGLQADVLGVMDGRGVADSGSIDDHKDAVSALEATEDRAAASHDSDGCTHTGDEGGATATVASSDHECD---GHDHGRSLEAGQ--------EGYDSNCAQCSEGGHEXXXXXXXXXXXXXXXXXKEMGEGTTTAAKRFGIDNFVYRQRRPFHPERLGRVLKSMPTPTNLALSQAAGGDTAAADAVTETSG------------------------EGGDKALLKAFGRLVRSKGFMWLAFSDNAAMYWSHAG 714
LT+I+ ALNP A + YG V ++ VLGVM G GVA+ G +DDHK+A+ + A+ + EC GH EG ++ XXXXXXXXXXXXXXXXX TTAA RFGI +FVYR+RRPFHP+RL LK MP +NL L A + D E G E D +L A G +VRSKGF WLA D AAMYWSHAG
Sbjct: 123 LTEIVRALNPKAAIAPAEYGKVPIRG-VLGVMKGNGVAELGVLDDHKEALEQADEMMAAPTAAPTXXXXXXXXXXXXXXXXXXXTCAECGESVGHXXXXXXXXXXXXXXXXXXEGKEAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXESADATTAATRFGITSFVYRRRRPFHPQRLLSFLKQMPVSSNLLLQDLADTEMDTDDLSGEKRGQTLPGAKRRTRRSTRTTSQADDLSEDSDPSLQAALGCIVRSKGFSWLANMDVAAMYWSHAG 394
BLAST of mRNA_H-elongata_contig105902.481.1 vs. uniprot
Match: A0A6S8CKI4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8CKI4_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.350e-15 Identity = 48/96 (50.00%), Postives = 60/96 (62.50%), Query Frame = 1
Query: 427 TTAAKRFGIDNFVYRQRRPFHPERLGRVLKSMPTPTNLALSQAAGGDTAAADAVTETSGEGGDKALLKAFGRLVRSKGFMWLAFSDNAAMYWSHAG 714
TTA RFGI++FVY +RRPF P+RL ++L+ +P D AA E + + D+AL AF LVRSKGFMWLA S +AA YWSHAG
Sbjct: 441 TTAETRFGINSFVYSRRRPFEPKRLEQILRQLPA------------DVTAAFHHFEKTEQAQDEALTSAFKLLVRSKGFMWLASSHDAAFYWSHAG 524
BLAST of mRNA_H-elongata_contig105902.481.1 vs. uniprot
Match: A0A836CKL1_9STRA (CobW/HypB/UreG, nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL1_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.790e-13 Identity = 50/117 (42.74%), Postives = 60/117 (51.28%), Query Frame = 1
Query: 421 GTTTAAKRFGIDNFVYRQRRPFHPERLGRVLKSMPTPTNLALSQAAGGDTAAADAVTETSGEGG-------------------DKALLKAFGRLVRSKGFMWLAFSDNAAMYWSHAG 714
G TTAA RFG++NFVYR+RRPFHP RL ++LK +P AL+ + A +A RLVRSKGF+WLA SD AAMYWSHAG
Sbjct: 477 GETTAAARFGVNNFVYRRRRPFHPTRLVQLLKLLPIAEGSALTLVEAAASVGATTXXXXXXXXXXXXXXXXXXXXXXXXXTEQQAVARQALRRLVRSKGFLWLACSDVAAMYWSHAG 593
BLAST of mRNA_H-elongata_contig105902.481.1 vs. uniprot
Match: A0A0G4F4G2_VITBC (CobW C-terminal domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F4G2_VITBC) HSP 1 Score: 76.6 bits (187), Expect = 1.950e-12 Identity = 48/97 (49.48%), Postives = 58/97 (59.79%), Query Frame = 1
Query: 427 TTAAKRFGIDNFVYRQRRPFHPERLGRVLKSMPTPTN-LALSQAAGGDTAAADAVTETSGEGGDKALLKAFGRLVRSKGFMWLAFSDNAAMYWSHAG 714
TTA KRFGI++FVY +RRPFHP+RL +VL +MP N LA S G+ ETS +G + RL RSKGF+WLA SD WS AG
Sbjct: 423 TTAEKRFGINSFVYSRRRPFHPDRLAKVLAAMPAADNPLAASFRPDGEL-------ETSDDG----VASVLSRLFRSKGFLWLASSDVTCWEWSLAG 508
BLAST of mRNA_H-elongata_contig105902.481.1 vs. uniprot
Match: A0A2K3DFC4_CHLRE (CobW C-terminal domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DFC4_CHLRE) HSP 1 Score: 73.9 bits (180), Expect = 5.320e-12 Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 1
Query: 421 GTTTAAKRFGIDNFVYRQRRPFHPERLGR-VLKSMPTPTNLALSQAAGGDTAAADAVTETSGEGGDKALLKAFGRLVRSKGFMWLAFSDNAAMYWSHAG 714
G T AA RFGI NFVY +RRPFHP+RL VLK +P +A++QA G+ E GD + ++RSKGFMWL+ S + A YWSHAG
Sbjct: 92 GETRAASRFGIRNFVYSRRRPFHPQRLKEMVLKWLP----VAVNQAIDGEAP----------EAGDSPIKT----VMRSKGFMWLSSSHSTAYYWSHAG 172
BLAST of mRNA_H-elongata_contig105902.481.1 vs. uniprot
Match: A0A4D9DBW1_9STRA (CobW C-terminal domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBW1_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 8.770e-12 Identity = 91/240 (37.92%), Postives = 121/240 (50.42%), Query Frame = 1
Query: 1 LTQILTALNPHARLIGCTYGNVGLQADVLGVMDGR-GVADSGSIDDHKDAVS-ALEATEDRAAASHDSDGCTHTGDEGGATATVASSDHECDGHDHGRSLEAGQEGYDSNCAQCSEGGHEXXXXXXXXXXXXXXXXXKEMGEGTTTAAKRFGIDNFVYRQRRPFHPERLGRVLKSMPTPTNLALSQAAGGDTAAADAVTETSGEGGDKALLKAFGRLVRSKGFMWLAFSDNAAMYWSHAG 714
L ++ LNP A ++ Y V L+ D LGV +GR GVA G++DDHK+AV + +++AAAS + GD GGA +H+ HDH XXXXXXXXXXXXXXXX K E TTA RF I ++Y +R+PFHP R +L+ M + A+ T A + S L L+RSKGF+WLA +D AA+Y+S AG
Sbjct: 282 LAEVAQTLNPWALVVPANYSRVPLE-DFLGVNEGRMGVALGGALDDHKEAVEGSARLAQEQAAASRQTRKEGGEGDSGGAVGL----EHK---HDHSXXXXXXX--------------XXXXXXXXXXXXXXXXXXGKTASE--TTARSRFQIGTYIYLRRKPFHPGRFADLLEEMAATSYAAVENVMAPKTGG-HAPSPPSAS--SSLLSSVLSGLLRSKGFLWLACTDQAALYFSQAG 494
BLAST of mRNA_H-elongata_contig105902.481.1 vs. uniprot
Match: A0A7S3V3R1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V3R1_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 8.890e-12 Identity = 96/265 (36.23%), Postives = 121/265 (45.66%), Query Frame = 1
Query: 1 LTQILTALNPHARLIGCTYGNVGLQADVLGVMDGRGVADSGSIDDHKDAVSALEATEDRAAASHDSDGCTHTGDEGGATATVASSDHEC--DGHDHGRSLEAGQEGYDSNCAQCSEGGHEXXXXXXXXXXXXXXXXXKEMGEGTTTAAKRF---------------------GIDNFVYRQRRPFHPERLGRVLKSMPT----PTNLALSQAAGGDTAAADAVTETSGEGGDKALLKAFGRLVRSKGFMWLAFSDNAAMYWSHAG 714
+ I+ ALN A++ +G V +LG G GVA SG DDHKDA+ AL+ RA A T ++ D C + H+ +E D N C++ E XXXXXXXXXXXXXX + T TA GI FVYR RRPF+P+RL VL+ MP P+ LA S+ E S E KAF +++R KGF WLA S+ AAMYWSHAG
Sbjct: 292 IESIIMALNARAKIFKTKFGIVDSLHSILGAAKGDGVAVSGITDDHKDAIEALDP---RAEAKQPQSLSEAT--------SIPCEDPVCIDESHEXXXXXXXXEE-KDCNEPGCTD---ESXXXXXXXXXXXXXXGDTDSTSPTATACTXXXXXXXXXXXXXXXSHEIEMPGGIGTFVYRARRPFNPDRLMNVLRLMPVVKGLPSQLATSKE-----------EEQSAE-----RRKAFKQILRGKGFCWLADSNIAAMYWSHAG 525
BLAST of mRNA_H-elongata_contig105902.481.1 vs. uniprot
Match: A0A7S2R413_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R413_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.490e-11 Identity = 82/240 (34.17%), Postives = 107/240 (44.58%), Query Frame = 1
Query: 1 LTQILTALNPHARLIGCTYGNVGLQADVLGVMDGRGVADSGSIDDHKDAVSALEATE--DRAAASHDSDGCTHTGDEGGATATVASSDHECDGHDHGRSLEAGQEGYDSNCAQCSEGGHEXXXXXXXXXXXXXXXXXKEMGEGTTTAAKRFGIDNFVYRQRRPFHPERLGRVLKSMPTPTNLALSQAAGGDTAAADAVTETSGEGGDKALLKAFGRLVRSKGFMWLAFSDNAAMYWSHAG 714
+ QI+ LN A + +G + L +L G+G A SG +DDHKDA+ A E + D H++D CT D C+ + + XXXXXXXXXXXX GTT A GI ++VYR RRPFHP+RL L+ +P G + + E G L + +VRSKGF+WLA S AAMYWSHAG
Sbjct: 278 IEQIVQRLNSKATIFRARFGKIPL-TQILATAKGQGTALSGIVDDHKDAIQAAERDQIKDDHDHQHNTDDCT---------------DQNCNDPSXXXXXXXXXXXXNDEV----DNXXXXXXXXXXXXXXXSHESSSSSSSGTTFA----GIGSYVYRARRPFHPDRLAAFLRHLPVTR--------GKPSTGSKEDFEKQG------LEQTLANIVRSKGFVWLADSHEAAMYWSHAG 479
BLAST of mRNA_H-elongata_contig105902.481.1 vs. uniprot
Match: A0A250X7K0_9CHLO (CobW C-terminal domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X7K0_9CHLO) HSP 1 Score: 73.9 bits (180), Expect = 1.540e-11 Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 1
Query: 427 TTAAKRFGIDNFVYRQRRPFHPERLGR-VLKSMPTPTNLALSQAAGGDTAAADAVTETSGEGGDKALLKAFGRLVRSKGFMWLAFSDNAAMYWSHAG 714
TTAAKRFGI NFVY +R+PFHP+RL VLK +P +N A+ D + G+ K++L RSKGFMW++ S A YWSHAG
Sbjct: 380 TTAAKRFGIRNFVYSRRKPFHPQRLKEMVLKWLPVSSNKAI-----------DGEAPSLGDSPIKSVL-------RSKGFMWMSNSHTTAFYWSHAG 458 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105902.481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig105902.481.1 >prot_H-elongata_contig105902.481.1 ID=prot_H-elongata_contig105902.481.1|Name=mRNA_H-elongata_contig105902.481.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=238bp LTQILTALNPHARLIGCTYGNVGLQADVLGVMDGRGVADSGSIDDHKDAVback to top mRNA from alignment at H-elongata_contig105902:293..2110+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig105902.481.1 ID=mRNA_H-elongata_contig105902.481.1|Name=mRNA_H-elongata_contig105902.481.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1818bp|location=Sequence derived from alignment at H-elongata_contig105902:293..2110+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig105902:293..2110+ >mRNA_H-elongata_contig105902.481.1 ID=mRNA_H-elongata_contig105902.481.1|Name=mRNA_H-elongata_contig105902.481.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at H-elongata_contig105902:293..2110+ (Himanthalia elongata Himel1 dioecious)back to top |