mRNA_H-elongata_contig10575.474.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10575.474.1
Unique NamemRNA_H-elongata_contig10575.474.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10575.474.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.590e-24
Identity = 58/162 (35.80%), Postives = 90/162 (55.56%), Query Frame = 1 
Query:    1 AWKALKETYNSYTKKTRRVCHEKLVRTKMEPGQDPDDLFFLLDESRDLLEEMGQTVHDERYEDIILQALPAEYERVRSASYEKRDFGQVNIRHMVHTMIVDSISHSSRSKPVAGNGISMQPTENIKSDVWCNYFRGVGHLLSDCIILKSKEQRHGSNRSRQR 486
            AWK L+++++  TK+ RR C  KL  T M+ G+DP D    +D+ R  LE+MG+ + DE YED++L+AL  EY  +R  S++ R FG   IR  +  M +D +S  S    VAG G++M       S+V C   +  GH  ++C       ++HG  +  +R
Sbjct:   63 AWKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSAES---SNVQCRNCQEFGHYANEC-------RKHGKGKGNRR 214
[Close]
BLAST of mRNA_H-elongata_contig10575.474.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.310e-11
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 1 
Query:   85 MEPGQDPDDLFFLLDESRDLLEEMGQTVHDERYEDIILQALPAEYERVRSASYEKRDFGQVNIRHMVHTMIVDSISHSSRSKPVAGNGISMQPTENIKSDVWC----NYFRGVGHLL 423
            M  G+DPD  F  +++ R   ++M + + DER+ED+ILQA+  +Y+ VR  S+  R FG   I+  + +M +DS+S +  +K VAG G++M P  N  S + C     + RG   LL
Sbjct:    1 MAQGEDPDGFFITVEDVRQRPKDMVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMKSMYIDSLSRTW-TKSVAGRGVAM-PASNGDSIIKCFNCGQFRRGNNRLL 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10575.474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE1.590e-2435.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWF9_9PHAE1.310e-1136.75Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10575contigH-elongata_contig10575:4512..5018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size507
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929590.7098463-CDS-H-elongata_contig10575:4511..50181622929590.7098463-CDS-H-elongata_contig10575:4511..5018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10575 4512..5018 +
1691679082.1812165-CDS-H-elongata_contig10575:4511..50181691679082.1812165-CDS-H-elongata_contig10575:4511..5018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10575 4512..5018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10575.474.1prot_H-elongata_contig10575.474.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10575 4512..5018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10575.474.1

>prot_H-elongata_contig10575.474.1 ID=prot_H-elongata_contig10575.474.1|Name=mRNA_H-elongata_contig10575.474.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
AWKALKETYNSYTKKTRRVCHEKLVRTKMEPGQDPDDLFFLLDESRDLLE
EMGQTVHDERYEDIILQALPAEYERVRSASYEKRDFGQVNIRHMVHTMIV
DSISHSSRSKPVAGNGISMQPTENIKSDVWCNYFRGVGHLLSDCIILKSK
EQRHGSNRSRQRALFQHN*
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mRNA from alignment at H-elongata_contig10575:4512..5018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10575.474.1 ID=mRNA_H-elongata_contig10575.474.1|Name=mRNA_H-elongata_contig10575.474.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=507bp|location=Sequence derived from alignment at H-elongata_contig10575:4512..5018+ (Himanthalia elongata Himel1 dioecious)
GCTTGGAAAGCCCTGAAAGAGACGTACAACAGCTATACGAAGAAGACTCG
AAGGGTGTGCCACGAGAAACTCGTGCGCACAAAAATGGAGCCCGGCCAGG
ATCCCGACGACTTATTCTTCCTCCTGGACGAATCCCGCGACCTTCTCGAG
GAAATGGGACAGACGGTGCATGACGAGCGTTACGAGGATATTATTTTACA
AGCTCTCCCTGCAGAGTACGAAAGAGTCCGAAGCGCCAGCTACGAGAAGA
GGGACTTCGGACAGGTCAACATTCGGCACATGGTACACACCATGATCGTC
GACAGCATTTCACACTCTTCCCGCTCTAAGCCGGTCGCAGGCAACGGCAT
TTCCATGCAGCCAACTGAAAACATCAAGAGCGATGTGTGGTGCAACTACT
TCAGGGGCGTCGGACACCTCCTCTCAGACTGTATCATCCTGAAGTCAAAG
GAGCAGCGCCATGGGTCCAACCGGTCGAGGCAGCGCGCTCTATTTCAACA
CAATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig10575:4512..5018+

>mRNA_H-elongata_contig10575.474.1 ID=mRNA_H-elongata_contig10575.474.1|Name=mRNA_H-elongata_contig10575.474.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig10575:4512..5018+ (Himanthalia elongata Himel1 dioecious)
GCTTGGAAAGCCCTGAAAGAGACGTACAACAGCTATACGAAGAAGACTCG
AAGGGTGTGCCACGAGAAACTCGTGCGCACAAAAATGGAGCCCGGCCAGG
ATCCCGACGACTTATTCTTCCTCCTGGACGAATCCCGCGACCTTCTCGAG
GAAATGGGACAGACGGTGCATGACGAGCGTTACGAGGATATTATTTTACA
AGCTCTCCCTGCAGAGTACGAAAGAGTCCGAAGCGCCAGCTACGAGAAGA
GGGACTTCGGACAGGTCAACATTCGGCACATGGTACACACCATGATCGTC
GACAGCATTTCACACTCTTCCCGCTCTAAGCCGGTCGCAGGCAACGGCAT
TTCCATGCAGCCAACTGAAAACATCAAGAGCGATGTGTGGTGCAACTACT
TCAGGGGCGTCGGACACCTCCTCTCAGACTGTATCATCCTGAAGTCAAAG
GAGCAGCGCCATGGGTCCAACCGGTCGAGGCAGCGCGCTCTATTTCAACA
CAATTAGGCTTGGAAAGCCCTGAAAGAGACGTACAACAGCTATACGAAGA
AGACTCGAAGGGTGTGCCACGAGAAACTCGTGCGCACAAAAATGGAGCCC
GGCCAGGATCCCGACGACTTATTCTTCCTCCTGGACGAATCCCGCGACCT
TCTCGAGGAAATGGGACAGACGGTGCATGACGAGCGTTACGAGGATATTA
TTTTACAAGCTCTCCCTGCAGAGTACGAAAGAGTCCGAAGCGCCAGCTAC
GAGAAGAGGGACTTCGGACAGGTCAACATTCGGCACATGGTACACACCAT
GATCGTCGACAGCATTTCACACTCTTCCCGCTCTAAGCCGGTCGCAGGCA
ACGGCATTTCCATGCAGCCAACTGAAAACATCAAGAGCGATGTGTGGTGC
AACTACTTCAGGGGCGTCGGACACCTCCTCTCAGACTGTATCATCCTGAA
GTCAAAGGAGCAGCGCCATGGGTCCAACCGGTCGAGGCAGCGCGCTCTAT
TTCAACACAATTAG
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