mRNA_H-elongata_contig105120.425.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105120.425.1
Unique NamemRNA_H-elongata_contig105120.425.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig105120.425.1 vs. uniprot
Match: D7FIC1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIC1_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 6.710e-17
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 RLVIKERDDVLAESIAKACREHPGRPVVAVLGLLHCNGVADNLRRFA 141
            RLVIKERDDVLA+++ KACR+HPGRPVVAVLGLLHCNGVAD +R  A
Sbjct:  473 RLVIKERDDVLADNVMKACRDHPGRPVVAVLGLLHCNGVADIIRSSA 519
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BLAST of mRNA_H-elongata_contig105120.425.1 vs. uniprot
Match: A0A7S0WU28_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WU28_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 7.340e-7
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    4 LVIKERDDVLAESIAKACREHPGRPVVAVLGLLHCNGV 117
            +V+  RD+VLA SI + C+ H G+ VVAVLG+LHCNGV
Sbjct:  341 IVLSSRDEVLAASIMQTCQRHKGQTVVAVLGMLHCNGV 378
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BLAST of mRNA_H-elongata_contig105120.425.1 vs. uniprot
Match: A0A7S3L447_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L447_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.340e-5
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:    1 RLVIKERDDVLAESIAKACR---------EHPGRPVVAVLGLLHCNGVADNLRRFA 141
            R++++ERDD+L + I +ACR          H    VVAVLGLLH NG+A+ L+  A
Sbjct:  359 RVILRERDDILTQGIREACRVAADNAARTNHTRGRVVAVLGLLHVNGIAERLQHPA 414
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BLAST of mRNA_H-elongata_contig105120.425.1 vs. uniprot
Match: A0A835YJK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJK9_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 5.940e-5
Identity = 22/28 (78.57%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   49 KACREHPGRPVVAVLGLLHCNGVADNLR 132
            +A R HPG PVVAVLGLLHCNGVA  LR
Sbjct:  402 EAARAHPGEPVVAVLGLLHCNGVAQLLR 429
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105120.425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FIC1_ECTSI6.710e-1780.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0WU28_9CHLO7.340e-760.53Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S3L447_9STRA4.340e-544.64Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A835YJK9_9STRA5.940e-578.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105120contigH-elongata_contig105120:506..691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue6.2e-14
Seed eggNOG ortholog2880.D7FIC1
EggNOG OGs2SW75@2759,COG1916@1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001340.1
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.074025-CDS-H-elongata_contig105120:505..6911622929584.074025-CDS-H-elongata_contig105120:505..691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105120 506..691 -
1691679079.9782085-CDS-H-elongata_contig105120:505..6911691679079.9782085-CDS-H-elongata_contig105120:505..691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105120 506..691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105120.425.1prot_H-elongata_contig105120.425.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105120 506..691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105120.425.1

>prot_H-elongata_contig105120.425.1 ID=prot_H-elongata_contig105120.425.1|Name=mRNA_H-elongata_contig105120.425.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
RLVIKERDDVLAESIAKACREHPGRPVVAVLGLLHCNGVADNLRRFAVAT
PENTTKDEVPL*
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mRNA from alignment at H-elongata_contig105120:506..691-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105120.425.1 ID=mRNA_H-elongata_contig105120.425.1|Name=mRNA_H-elongata_contig105120.425.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig105120:506..691- (Himanthalia elongata Himel1 dioecious)
AGGTTAGTCATCAAGGAACGCGATGACGTGCTGGCTGAGTCCATCGCGAA
GGCTTGCCGCGAGCATCCTGGTCGCCCTGTGGTGGCCGTCCTAGGGCTTC
TTCACTGCAATGGTGTGGCCGACAATCTCCGTAGATTTGCCGTCGCTACG
CCGGAAAACACGACGAAAGATGAAGTTCCGCTCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig105120:506..691-

>mRNA_H-elongata_contig105120.425.1 ID=mRNA_H-elongata_contig105120.425.1|Name=mRNA_H-elongata_contig105120.425.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig105120:506..691- (Himanthalia elongata Himel1 dioecious)
AGGTTAGTCATCAAGGAACGCGATGACGTGCTGGCTGAGTCCATCGCGAA
GGCTTGCCGCGAGCATCCTGGTCGCCCTGTGGTGGCCGTCCTAGGGCTTC
TTCACTGCAATGGTGTGGCCGACAATCTCCGTAGATTTGCCGTCGCTACG
CCGGAAAACACGACGAAAGATGAAGTTCCGCTCTAAAGGTTAGTCATCAA
GGAACGCGATGACGTGCTGGCTGAGTCCATCGCGAAGGCTTGCCGCGAGC
ATCCTGGTCGCCCTGTGGTGGCCGTCCTAGGGCTTCTTCACTGCAATGGT
GTGGCCGACAATCTCCGTAGATTTGCCGTCGCTACGCCGGAAAACACGAC
GAAAGATGAAGTTCCGCTCTAA
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