mRNA_H-elongata_contig105082.423.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105082.423.1
Unique NamemRNA_H-elongata_contig105082.423.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig105082.423.1 vs. uniprot
Match: D7FYU2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYU2_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 3.180e-27
Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    1 EVEIVKAIILREEYIVRVKKKIGRQGPKFGRE-EVLEDLVSLLDLLRSATVDSVEAIQKWR-IQGRPE-PFMWKGTNYLLKIPTDTDFLD 261
            EVE+ KAIILREEYI+RVK  +     KFG++ E  + L+SL+DLLR+ATVD+VEAI++WR IQG P  PF+WK  NYLLKI +D DFLD
Sbjct:   39 EVEVAKAIILREEYILRVKANLDNHQSKFGKDQEAFDGLISLVDLLRTATVDTVEAIEQWRRIQGNPAAPFIWKSVNYLLKIGSDLDFLD 128
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BLAST of mRNA_H-elongata_contig105082.423.1 vs. uniprot
Match: A0A3R6WZC3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6WZC3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.540e-15
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:    1 EVEIVKAIILREEYIVRVKKKIGRQGPKFGREEVLEDLVSLLDLLRSATVDSVEAIQKWR-IQGRPEPFMWKGTNYLLKIPTDTDFLDECKV 273
            E+E++KAIILRE+Y+ R+     R+     +  ++  + + LDL+R  TV+ VEAI  WR +Q +  PF W G NYLLK+P+D DF+ EC V
Sbjct:   66 ELEVLKAIILREDYLTRLLDMSKRES----QYTLVGSMANTLDLIRLTTVEVVEAIAAWRKLQPKHMPFKWYGVNYLLKVPSDLDFMQECDV 153
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BLAST of mRNA_H-elongata_contig105082.423.1 vs. uniprot
Match: A0A397CUN5_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CUN5_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.000e-15
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:    1 EVEIVKAIILREEYIVRVKKKIGRQGPKFGREEVLEDLVSLLDLLRSATVDSVEAIQKWR-IQGRPEPFMWKGTNYLLKIPTDTDFLDECKV 273
            E+E++KAIILRE+Y+ R+     R+     +  ++  + + LDL+R  TV+ VEAI  WR +Q +  PF W G NYLLK+P+D DF+ EC V
Sbjct:   66 ELEVLKAIILREDYLTRLLDMSKRES----QYTLVGSMANTLDLIRLTTVEVVEAIAAWRKLQPKHMPFKWNGVNYLLKVPSDLDFMQECDV 153
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BLAST of mRNA_H-elongata_contig105082.423.1 vs. uniprot
Match: W4H646_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H646_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.060e-15
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:    1 EVEIVKAIILREEYIVRVKKKIGRQGPKFGREEVLEDLVSLLDLLRSATVDSVEAIQKWR-IQGRPEPFMWKGTNYLLKIPTDTDFLDECKV 273
            E+E++KAIILRE+Y+ R+     R+     +  ++  + + LDL+R  TV+ VEAI  WR +Q +  PF W G NYLLK+P+D DF+ EC V
Sbjct:  112 ELEVLKAIILREDYLTRLLDMSKRES----QYTLVGSMANTLDLIRLTTVEVVEAIAAWRKLQPKHMPFKWNGVNYLLKVPSDLDFMQECDV 199
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BLAST of mRNA_H-elongata_contig105082.423.1 vs. uniprot
Match: A0A1V9YF24_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YF24_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.810e-15
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    1 EVEIVKAIILREEYIVRVKKKIGRQGPKFGREEVLEDLVSLLDLLRSATVDSVEAIQKWRIQGRPE-PFMWKGTNYLLKIPTDTDFLDECKV 273
            E++I+KAIILRE+YI R+K+      P      ++  + + LDLLR  TV+ VEAI +WR Q +   PF W G NYLLK+P+D DFL  C V
Sbjct:   17 ELDILKAIILREDYIARLKEMSESDSPY----ALVGAMANTLDLLRITTVEVVEAIIQWRKQQQKSLPFKWNGINYLLKLPSDLDFLQHCDV 104
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BLAST of mRNA_H-elongata_contig105082.423.1 vs. uniprot
Match: A0A067CVL0_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CVL0_SAPPC)

HSP 1 Score: 79.3 bits (194), Expect = 2.810e-15
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    1 EVEIVKAIILREEYIVRVKKKIGRQGPKFGREEVLEDLVSLLDLLRSATVDSVEAIQKWRIQGRPE-PFMWKGTNYLLKIPTDTDFLDECKV 273
            E+EI+KAIILRE+Y+ R+ +      P      ++  + + LDLLR  TV+ VEAI +WR Q +   PF W G NYLLK+PTD +FL +C V
Sbjct:   84 ELEILKAIILREDYVARLLEMSQSDAP----HALIGAMANTLDLLRITTVEVVEAIVQWRKQQQKHVPFKWNGINYLLKLPTDLNFLQQCDV 171
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BLAST of mRNA_H-elongata_contig105082.423.1 vs. uniprot
Match: A0A418DH23_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DH23_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.740e-15
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:    1 EVEIVKAIILREEYIVRVKKKIGRQGPKFGREEVLEDLVSLLDLLRSATVDSVEAIQKWR-IQGRPEPFMWKGTNYLLKIPTDTDFLDECKV 273
            E+E++KAIILRE+Y+ R+     R+     +  ++  + + LDL+R  TV+ VEAI  WR +Q +  PF W G NYLLK+P+D DF+ EC V
Sbjct:   66 ELEVLKAIILREDYLTRLLDMSKRES----QYTLVGSMANTLDLIRLTTVEVVEAIAAWRKLQPKHMPFKWYGVNYLLKVPSDLDFMQECDV 153
[Close]
BLAST of mRNA_H-elongata_contig105082.423.1 vs. uniprot
Match: A0A6G0XY69_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XY69_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.840e-15
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:    1 EVEIVKAIILREEYIVRVKKKIGRQGPKFGREEVLEDLVSLLDLLRSATVDSVEAIQKWRI-QGRPEPFMWKGTNYLLKIPTDTDFLDECKV 273
            E++++KAIILRE+YI R+ +    + P      V+  + + LDL+R  TV+ VEAI  WR  Q +  PF W G NYL+KIP+D DFL+EC V
Sbjct:  109 ELDVLKAIILREDYISRLAELSRSESPY----AVVGSMANTLDLIRLTTVEVVEAIATWRKRQTKHMPFKWNGINYLVKIPSDLDFLEECDV 196
[Close]
BLAST of mRNA_H-elongata_contig105082.423.1 vs. uniprot
Match: A0A6A5A6J2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A6J2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 9.480e-15
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    1 EVEIVKAIILREEYIVRVKKKIGRQGPKFGREEVLEDLVSLLDLLRSATVDSVEAIQKWR-IQGRPEPFMWKGTNYLLKIPTDTDFLDECKV 273
            E+E++KAIILRE+Y+ R+     R+     +  ++  + + LDL+R  TV+ VEAI  WR +Q +  PF W G NYLLK+P+D DF+ E  V
Sbjct:  123 ELEVLKAIILREDYLTRLLDMSKRES----QYTLVGSMANTLDLIRLTTVEVVEAIAAWRKLQPKHMPFKWNGVNYLLKVPSDLDFMQEVVV 210
[Close]
BLAST of mRNA_H-elongata_contig105082.423.1 vs. uniprot
Match: T0Q9C9_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q9C9_SAPDV)

HSP 1 Score: 77.4 bits (189), Expect = 1.330e-14
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    1 EVEIVKAIILREEYIVRVKKKIGRQGPKFGREEVLEDLVSLLDLLRSATVDSVEAIQKWRIQGRPE-PFMWKGTNYLLKIPTDTDFLDECKV 273
            E+EI+KAIILRE+Y+ R+ +      P      ++  + + LDLLR  TV+ VEAI +WR Q +   PF W G NYLLK+P+D +FL +C V
Sbjct:   84 ELEILKAIILREDYVARLLEMSQSDAP----HALVGAMANTLDLLRITTVEVVEAILQWRKQQQKNLPFKWNGINYLLKLPSDLNFLQQCDV 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105082.423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYU2_ECTSI3.180e-2762.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3R6WZC3_9STRA1.540e-1544.57Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A397CUN5_9STRA2.000e-1544.57Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
W4H646_9STRA2.060e-1544.57Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A1V9YF24_9STRA2.810e-1547.83Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CVL0_SAPPC2.810e-1546.74Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A418DH23_9STRA3.740e-1544.57Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0XY69_9STRA3.840e-1546.74Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A5A6J2_9STRA9.480e-1543.48Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
T0Q9C9_SAPDV1.330e-1445.65Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105082contigH-elongata_contig105082:1356..1628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue1e-12
Seed eggNOG ortholog112098.XP_008615112.1
EggNOG free text desc.Short calmodulin-binding motif containing conserved Ile and Gln residues.
EggNOG OGs293JW@1,2RAGR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929583.9584274-CDS-H-elongata_contig105082:1355..16281622929583.9584274-CDS-H-elongata_contig105082:1355..1628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105082 1356..1628 -
1691679079.9379506-CDS-H-elongata_contig105082:1355..16281691679079.9379506-CDS-H-elongata_contig105082:1355..1628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105082 1356..1628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105082.423.1prot_H-elongata_contig105082.423.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105082 1356..1628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105082.423.1

>prot_H-elongata_contig105082.423.1 ID=prot_H-elongata_contig105082.423.1|Name=mRNA_H-elongata_contig105082.423.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
EVEIVKAIILREEYIVRVKKKIGRQGPKFGREEVLEDLVSLLDLLRSATV
DSVEAIQKWRIQGRPEPFMWKGTNYLLKIPTDTDFLDECKV
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mRNA from alignment at H-elongata_contig105082:1356..1628-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105082.423.1 ID=mRNA_H-elongata_contig105082.423.1|Name=mRNA_H-elongata_contig105082.423.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at H-elongata_contig105082:1356..1628- (Himanthalia elongata Himel1 dioecious)
GAGGTGGAGATTGTTAAAGCTATAATCCTTCGCGAAGAGTATATTGTGCG
AGTGAAGAAAAAAATTGGTCGGCAAGGGCCAAAATTTGGTAGGGAAGAGG
TCCTCGAAGACCTTGTTAGCCTGCTGGATCTTCTCCGATCCGCAACGGTC
GATTCGGTTGAGGCGATCCAAAAATGGAGAATTCAAGGACGTCCTGAACC
CTTCATGTGGAAAGGAACAAATTACCTCTTGAAGATTCCTACTGATACTG
ACTTTTTGGACGAATGTAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig105082:1356..1628-

>mRNA_H-elongata_contig105082.423.1 ID=mRNA_H-elongata_contig105082.423.1|Name=mRNA_H-elongata_contig105082.423.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig105082:1356..1628- (Himanthalia elongata Himel1 dioecious)
GAGGTGGAGATTGTTAAAGCTATAATCCTTCGCGAAGAGTATATTGTGCG
AGTGAAGAAAAAAATTGGTCGGCAAGGGCCAAAATTTGGTAGGGAAGAGG
TCCTCGAAGACCTTGTTAGCCTGCTGGATCTTCTCCGATCCGCAACGGTC
GATTCGGTTGAGGCGATCCAAAAATGGAGAATTCAAGGACGTCCTGAACC
CTTCATGTGGAAAGGAACAAATTACCTCTTGAAGATTCCTACTGATACTG
ACTTTTTGGACGAATGTAAGGTGGAGGTGGAGATTGTTAAAGCTATAATC
CTTCGCGAAGAGTATATTGTGCGAGTGAAGAAAAAAATTGGTCGGCAAGG
GCCAAAATTTGGTAGGGAAGAGGTCCTCGAAGACCTTGTTAGCCTGCTGG
ATCTTCTCCGATCCGCAACGGTCGATTCGGTTGAGGCGATCCAAAAATGG
AGAATTCAAGGACGTCCTGAACCCTTCATGTGGAAAGGAACAAATTACCT
CTTGAAGATTCCTACTGATACTGACTTTTTGGACGAATGTAAGGTG
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