mRNA_H-elongata_contig105033.419.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105033.419.1
Unique NamemRNA_H-elongata_contig105033.419.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig105033.419.1 vs. uniprot
Match: A0A6H5KAY1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAY1_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 2.160e-86
Identity = 126/132 (95.45%), Postives = 131/132 (99.24%), Query Frame = 1
Query:    1 MKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTHMGVWQFRSSWEDSIIGGRISVAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKEGFQLAKKFPLDGNDG 396
            MKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNT +GVWQFRS+WEDSIIGGRIS+AGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIK+GFQLAKKFPLDGN+G
Sbjct:  122 MKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNG 253          
BLAST of mRNA_H-elongata_contig105033.419.1 vs. uniprot
Match: A0A835Z0G9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G9_9STRA)

HSP 1 Score: 223 bits (569), Expect = 1.490e-71
Identity = 102/132 (77.27%), Postives = 122/132 (92.42%), Query Frame = 1
Query:    1 MKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTHMGVWQFRSSWEDSIIGGRISVAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKEGFQLAKKFPLDGNDG 396
            +KDLFP+V +S +PTT+LKLRK   PLKTV+TLGADYNT++G+WQFRSSWEDSIIGGRISVAGRE+ML+KSWL+KVMDSEDVATRLKF+AA+NT+DWTAYAKFG RTERI+PLN++EGF L ++ PLDGN G
Sbjct:   75 VKDLFPHVSLSCEPTTTLKLRKIFTPLKTVVTLGADYNTNIGIWQFRSSWEDSIIGGRISVAGRELMLSKSWLIKVMDSEDVATRLKFKAAVNTKDWTAYAKFGLRTERIAPLNVREGFTLCRRLPLDGNRG 206          
BLAST of mRNA_H-elongata_contig105033.419.1 vs. uniprot
Match: A0A4D9CS25_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS25_9STRA)

HSP 1 Score: 183 bits (464), Expect = 3.400e-55
Identity = 80/130 (61.54%), Postives = 103/130 (79.23%), Query Frame = 1
Query:    7 DLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTHMGVWQFRSSWEDSIIGGRISVAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKEGFQLAKKFPLDGNDG 396
            DL P  RV ++P T+LKLRKR YP KTV+ LGADYNT +GVWQF+SSWED IIGGR++V GRE+  +K+WL+ + D +D+ATRLKFRA I+T  W +YA+ GFRTERI PLN+K+G  L ++ PLDG +G
Sbjct:  115 DLIPRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEG 244          
BLAST of mRNA_H-elongata_contig105033.419.1 vs. uniprot
Match: W7U3J5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3J5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.430e-53
Identity = 80/130 (61.54%), Postives = 103/130 (79.23%), Query Frame = 1
Query:    7 DLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTHMGVWQFRSSWEDSIIGGRISVAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKEGFQLAKKFPLDGNDG 396
            DL P  RV ++P T+LKLRKR YP KTV+ LGADYNT +GVWQF+SSWED IIGGR++V GRE+  +K+WL+ + D +D+ATRLKFRA I+T  W +YA+ GFRTERI PLN+K+G  L ++ PLDG +G
Sbjct:  264 DLIPRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEG 393          
BLAST of mRNA_H-elongata_contig105033.419.1 vs. uniprot
Match: A0A7S1BGQ1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BGQ1_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.370e-53
Identity = 80/131 (61.07%), Postives = 105/131 (80.15%), Query Frame = 1
Query:    4 KDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTHMGVWQFRSSWEDSIIGGRISVAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKEGFQLAKKFPLDGNDG 396
            +D FP ++V  DP T+LKLRKR  PLKTVLTLGAD+ T +GVWQF+SSWEDS+IGGR+++ GRE+ ++K+WLL V   ED+ TRL+ RAA++     AYA+FGFRTER+SP+N+ EGF L K FPLDG++G
Sbjct:   92 RDKFPGLKVRTDPRTTLKLRKRFRPLKTVLTLGADFETQLGVWQFKSSWEDSLIGGRLTLNGRELQMSKTWLLSVGAVEDLVTRLRLRAAVDLATGKAYARFGFRTERLSPINVVEGFTLKKMFPLDGSNG 222          
BLAST of mRNA_H-elongata_contig105033.419.1 vs. uniprot
Match: B7G885_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G885_PHATC)

HSP 1 Score: 177 bits (450), Expect = 2.000e-52
Identity = 77/130 (59.23%), Postives = 105/130 (80.77%), Query Frame = 1
Query:   13 FPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTHMGVWQFRSSWEDSIIGGRISVAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKEGFQLAKKFPLDGNDGEI 402
            +P ++  ++PTT+LK+RK   PLKTV+ LGAD+NT +GVWQFRSSWED+IIGG++++AGRE+ L+KSW L V   ED+ TRL+FRAA++ + W AYA+ GFRTER+SP+N+ EGF L K+ PLDGN G +
Sbjct:  174 WPKIQCRVEPTTTLKIRKTFRPLKTVVQLGADFNTQLGVWQFRSSWEDAIIGGKLTLAGRELQLSKSWQLSVGAVEDLVTRLRFRAAVDLQTWKAYARVGFRTERLSPINVMEGFTLLKQLPLDGNHGHV 303          
BLAST of mRNA_H-elongata_contig105033.419.1 vs. uniprot
Match: A0A7S1TRT3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRT3_9STRA)

HSP 1 Score: 171 bits (434), Expect = 2.110e-50
Identity = 75/132 (56.82%), Postives = 99/132 (75.00%), Query Frame = 1
Query:    7 DLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTHMGVWQFRSSWEDSIIGGRISVAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKEGFQLAKKFPLDGNDGEI 402
            D FP VR   +P+T+LKLRKR YPLKT LTLGADYNT +G+WQF SSWED IIGGR+S  GRE+ L+K W+LK+ ++ D+  +L FRAA++T     YAKFG+R E++ P+N++EG    +K PLDG DG +
Sbjct:  135 DYFPRVRCHFEPSTTLKLRKRFYPLKTRLTLGADYNTQLGIWQFISSWEDQIIGGRLSFRGRELQLSKKWMLKIDEASDLIAKLTFRAALDTSTGATYAKFGWRFEKLEPINVREGIPWRQKLPLDGPDGHV 266          
BLAST of mRNA_H-elongata_contig105033.419.1 vs. uniprot
Match: A0A7S2S8R8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S8R8_9STRA)

HSP 1 Score: 170 bits (431), Expect = 5.220e-50
Identity = 74/130 (56.92%), Postives = 102/130 (78.46%), Query Frame = 1
Query:   13 FPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTHMGVWQFRSSWEDSIIGGRISVAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKEGFQLAKKFPLDGNDGEI 402
            FP ++  ++P T+LK+RK   PLKTV+ LGAD+NT +GVWQF+SSWEDS+IGG++++AGRE+ L+K+WLL V   ED+ TRL+FRAA++     AYA+ GFRTER+SP+N+ EGF L K+ PLDG  G +
Sbjct:  135 FPKLQCRVEPNTTLKVRKTFRPLKTVIRLGADFNTQLGVWQFKSSWEDSLIGGKLTLAGREIQLSKTWLLSVGAVEDLVTRLRFRAAVDLGTMKAYARLGFRTERLSPINVVEGFTLMKQLPLDGTQGHV 264          
BLAST of mRNA_H-elongata_contig105033.419.1 vs. uniprot
Match: A0A7S1GJA6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJA6_CYCTE)

HSP 1 Score: 168 bits (425), Expect = 9.520e-50
Identity = 73/130 (56.15%), Postives = 103/130 (79.23%), Query Frame = 1
Query:   13 FPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTHMGVWQFRSSWEDSIIGGRISVAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKEGFQLAKKFPLDGNDGEI 402
            FP ++  +DPTT+LK++K   PLKT++ LGA++NT +GVWQF+SSWED+IIGG++++AGRE+ LTKSW L +   ED+ TRL+FRAA++ +   AYA+ GFRTER+SP+N+ EGF L  + PLDG +G I
Sbjct:   81 FPKLQCRIDPTTTLKIQKTFRPLKTIVRLGAEFNTQLGVWQFKSSWEDAIIGGKLTLAGRELQLTKSWQLSMGPMEDLVTRLRFRAAVDLQTMKAYARVGFRTERLSPINMMEGFTLQHQIPLDGQNGHI 210          
BLAST of mRNA_H-elongata_contig105033.419.1 vs. uniprot
Match: A0A7S3Q958_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q958_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.590e-48
Identity = 72/129 (55.81%), Postives = 100/129 (77.52%), Query Frame = 1
Query:   16 PNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTHMGVWQFRSSWEDSIIGGRISVAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKEGFQLAKKFPLDGNDGEI 402
            P ++  ++P T+LK+RK   PLKTV+ LGAD+NT +GVWQF+SSWED +IGG++++AGRE+  +K+WLL V   ED+ TRL+ RAA++     AYA+ GFRTER+SP+N+ EGF L K+ PLDGNDG +
Sbjct:  167 PKLQCRVEPNTTLKVRKTFRPLKTVVKLGADFNTQLGVWQFKSSWEDDVIGGKLTLAGRELQFSKTWLLSVGAVEDLVTRLRMRAAVDLGTMKAYARLGFRTERLSPINVVEGFTLMKRLPLDGNDGHV 295          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105033.419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAY1_9PHAE2.160e-8695.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0G9_9STRA1.490e-7177.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CS25_9STRA3.400e-5561.54Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U3J5_9STRA1.430e-5361.54Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S1BGQ1_9STRA2.370e-5361.07Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B7G885_PHATC2.000e-5259.23Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S1TRT3_9STRA2.110e-5056.82Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2S8R8_9STRA5.220e-5056.92Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1GJA6_CYCTE9.520e-5056.15Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3Q958_9STRA2.590e-4855.81Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105033contigH-elongata_contig105033:530..931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score262.3
Seed ortholog evalue1.2e-67
Seed eggNOG ortholog2880.D7FKW6
EggNOG OGs2DZIP@1,2S72C@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_001630.1
Exons1
Model size402
Cds size402
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929583.6018167-CDS-H-elongata_contig105033:529..9311622929583.6018167-CDS-H-elongata_contig105033:529..931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105033 530..931 -
1691679079.83944-CDS-H-elongata_contig105033:529..9311691679079.83944-CDS-H-elongata_contig105033:529..931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105033 530..931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105033.419.1prot_H-elongata_contig105033.419.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105033 530..931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105033.419.1

>prot_H-elongata_contig105033.419.1 ID=prot_H-elongata_contig105033.419.1|Name=mRNA_H-elongata_contig105033.419.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTHMGVWQFRSSW
EDSIIGGRISVAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAY
AKFGFRTERISPLNIKEGFQLAKKFPLDGNDGEI
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mRNA from alignment at H-elongata_contig105033:530..931-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105033.419.1 ID=mRNA_H-elongata_contig105033.419.1|Name=mRNA_H-elongata_contig105033.419.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=402bp|location=Sequence derived from alignment at H-elongata_contig105033:530..931- (Himanthalia elongata Himel1 dioecious)
ATGAAGGATCTCTTCCCTAACGTACGCGTGTCGATGGACCCGACAACATC TCTGAAGCTACGAAAACGCATTTACCCGCTCAAGACGGTATTGACCCTTG GAGCAGACTATAACACCCACATGGGTGTGTGGCAGTTCCGGTCAAGTTGG GAGGATTCTATTATCGGCGGCAGGATTAGCGTCGCGGGACGGGAAGTCAT GTTGACGAAGTCGTGGCTACTTAAGGTCATGGACTCCGAGGACGTTGCAA CGCGGTTAAAATTCCGAGCGGCTATCAACACTCGAGACTGGACAGCGTAC GCAAAGTTTGGGTTCCGCACGGAGCGCATTTCACCCCTGAACATAAAGGA GGGCTTCCAATTGGCGAAAAAGTTCCCTCTCGACGGAAACGATGGTGAGA TA
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Coding sequence (CDS) from alignment at H-elongata_contig105033:530..931-

>mRNA_H-elongata_contig105033.419.1 ID=mRNA_H-elongata_contig105033.419.1|Name=mRNA_H-elongata_contig105033.419.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig105033:530..931- (Himanthalia elongata Himel1 dioecious)
ATGAAGGATCTCTTCCCTAACGTACGCGTGTCGATGGACCCGACAACATC
TCTGAAGCTACGAAAACGCATTTACCCGCTCAAGACGGTATTGACCCTTG
GAGCAGACTATAACACCCACATGGGTGTGTGGCAGTTCCGGTCAAGTTGG
GAGGATTCTATTATCGGCGGCAGGATTAGCGTCGCGGGACGGGAAGTCAT
GTTGACGAAGTCGTGGCTACTTAAGGTCATGGACTCCGAGGACGTTGCAA
CGCGGTTAAAATTCCGAGCGGCTATCAACACTCGAGACTGGACAGCGTAC
GCAAAGTTTGGGTTCCGCACGGAGCGCATTTCACCCCTGAACATAAAGGA
GGGCTTCCAATTGGCGAAAAAGTTCCCTCTCGACGGAAACGATGGTGAGA
TAATGAAGGATCTCTTCCCTAACGTACGCGTGTCGATGGACCCGACAACA
TCTCTGAAGCTACGAAAACGCATTTACCCGCTCAAGACGGTATTGACCCT
TGGAGCAGACTATAACACCCACATGGGTGTGTGGCAGTTCCGGTCAAGTT
GGGAGGATTCTATTATCGGCGGCAGGATTAGCGTCGCGGGACGGGAAGTC
ATGTTGACGAAGTCGTGGCTACTTAAGGTCATGGACTCCGAGGACGTTGC
AACGCGGTTAAAATTCCGAGCGGCTATCAACACTCGAGACTGGACAGCGT
ACGCAAAGTTTGGGTTCCGCACGGAGCGCATTTCACCCCTGAACATAAAG
GAGGGCTTCCAATTGGCGAAAAAGTTCCCTCTCGACGGAAACGATGGTGA
GATA
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