mRNA_H-elongata_contig1048.396.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1048.396.1
Unique NamemRNA_H-elongata_contig1048.396.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1048.396.1 vs. uniprot
Match: A0A6H5JLC6_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLC6_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 4.760e-62
Identity = 104/152 (68.42%), Postives = 126/152 (82.89%), Query Frame = 1
Query:    4 LNIFLEYLDKGSVRDRLEREGRMSEAETAGITKKFLAGLAYLHSQGITHRDIKGANVLLSRGGAVKLADFGTSKLVNQESVMSGLKGTPHWMAPEVIRDQQQGHEGWIRADVWSVGCMVIEMLTGKRPWPDVPNAVAVMFKIARGMTPPIDR 459
            LNIFLEY+D GS+R RL+REG M E +TA +T+K L GLAYLHS  ITHRDIKGANVLLS+ GAVKLADFGTSK ++Q+SV+SGLKGTP+WMAPEVI++Q     GW++ADVWSVGC V+EMLTGK PWP++PN +  MFKI  G  PP++R
Sbjct:  150 LNIFLEYMDGGSLRRRLDREGPMCERQTAVVTRKVLCGLAYLHSNNITHRDIKGANVLLSKKGAVKLADFGTSKPMDQDSVVSGLKGTPNWMAPEVIKNQLLPG-GWLQADVWSVGCTVVEMLTGKMPWPNMPNPLCAMFKIVSGDKPPVNR 300          
BLAST of mRNA_H-elongata_contig1048.396.1 vs. uniprot
Match: I2CPJ7_NANGC (Ha-tagged protein kinase domain of mitogen-activated protein kinase kinase kinase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ7_NANGC)

HSP 1 Score: 200 bits (508), Expect = 1.680e-61
Identity = 93/152 (61.18%), Postives = 116/152 (76.32%), Query Frame = 1
Query:    4 LNIFLEYLDKGSVRDRLEREGRMSEAETAGITKKFLAGLAYLHSQGITHRDIKGANVLLSRGGAVKLADFGTSKLVNQESVMSGLKGTPHWMAPEVIRDQQQGHEGWIRADVWSVGCMVIEMLTGKRPWPDVPNAVAVMFKIARGMTPPIDR 459
            LNIFLEY  +GS+R  L+ EG ++E +T   T++ L GL YLH  GI HRD+KGANVL+SR GA+KLADFG SK +  ES+MSGLKGTPHWMAPE+I+  +   EGW +ADVWS+GC V+EMLTG+ PWPD PN +A M+ IA G +PPI R
Sbjct:   91 LNIFLEYCPRGSLRHMLQSEGALTERQTGIYTRQILMGLRYLHENGIAHRDVKGANVLVSREGAMKLADFGASKRLGHESLMSGLKGTPHWMAPEIIKGAKTS-EGWKKADVWSLGCTVVEMLTGRMPWPDHPNPIAAMYHIANGQSPPIHR 241          
BLAST of mRNA_H-elongata_contig1048.396.1 vs. uniprot
Match: A0A835YVT9_9STRA (Ha-tagged protein kinase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT9_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.830e-61
Identity = 93/152 (61.18%), Postives = 117/152 (76.97%), Query Frame = 1
Query:    4 LNIFLEYLDKGSVRDRLEREGRMSEAETAGITKKFLAGLAYLHSQGITHRDIKGANVLLSRGGAVKLADFGTSKLVNQESVMSGLKGTPHWMAPEVIRDQQQGHEGWIRADVWSVGCMVIEMLTGKRPWPDVPNAVAVMFKIARGMTPPIDR 459
            LNIFLEY+D GS+R  LE+ G +SE  TA  TK+ L GL +LH++ ITHRD+KGAN+L+ R G++KLADFG +K +  ESV  GLKGTPHWMAPEVIR QQ    GW +ADVWSVGC V+EMLTG+ PWP++ N +A M++IA G  PP+DR
Sbjct:  110 LNIFLEYVDGGSLRKMLEKTGPLSEPHTACNTKQILEGLRHLHTRNITHRDVKGANILVCRDGSLKLADFGAAKRMGHESVCGGLKGTPHWMAPEVIRGQQMA-SGWFKADVWSVGCTVVEMLTGRMPWPNISNPMAAMYRIANGEKPPLDR 260          
BLAST of mRNA_H-elongata_contig1048.396.1 vs. uniprot
Match: A0A7S2RVT5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVT5_9STRA)

HSP 1 Score: 187 bits (474), Expect = 4.690e-53
Identity = 93/150 (62.00%), Postives = 110/150 (73.33%), Query Frame = 1
Query:    4 LNIFLEYLDKGSVRDRLEREGRMSEAETAGITKKFLAGLAYLHSQGITHRDIKGANVLLSRGGAVKLADFGTSKLVNQESVMSGLKGTPHWMAPEVIRDQQQGHEGWIRADVWSVGCMVIEMLTGKRPWPDVPNAVAVMFKIARGMTPPI 453
            LNIFLEY   GS+R  L+ +G +SE ET+  T + L GL YLHS   THRDIKGANVLLS  G  KLADFG  K V   S +SGLKGTPHWMAPEVIR +Q    GW +AD+WSVGC VIEMLTG+ PWPD+PN +A +++IA G +PPI
Sbjct:  123 LNIFLEYAAGGSLRQLLQEKGGLSEEETSRYTYQILQGLHYLHSNEKTHRDIKGANVLLSAEGFCKLADFGACKHVEATSYVSGLKGTPHWMAPEVIRGEQGS--GWQKADIWSVGCTVIEMLTGQAPWPDLPNPIAALYRIAHGDSPPI 270          
BLAST of mRNA_H-elongata_contig1048.396.1 vs. uniprot
Match: F0Y0R9_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0R9_AURAN)

HSP 1 Score: 165 bits (417), Expect = 1.400e-48
Identity = 85/158 (53.80%), Postives = 108/158 (68.35%), Query Frame = 1
Query:    1 RLNIFLEYLDKGSVRDRLEREGRMSEAETAGITKKFLAGLAYLHSQGITHRDIKGANVLLSRGGAVK--LADFGTSKLVN----QESVMSGLKGTPHWMAPEVIRDQQQGH-EGWIRADVWSVGCMVIEMLTGKRPWPDVPNAVAVMFKIARGMTPPI 453
            RL+IF+EY   GSVR  L+  G  SEA  A   ++ L GL YLH+ G+ HRDIKGAN+LLS   A +  LADFG SK +      +SV+SGLKGTP WMAPEVI+ Q  G  +GW+ ADVWS+GC ++EM+TG+ PWP  PN +A M+ IA G  PP+
Sbjct:   29 RLSIFMEYAMGGSVRQLLQDGGAFSEARAARTLEQVLRGLTYLHAHGVAHRDIKGANILLSAPAARERDLADFGASKRIGTLGEDKSVLSGLKGTPRWMAPEVIKGQIAGTLDGWVLADVWSMGCTMVEMVTGEMPWPMFPNPMAAMYHIADGKAPPL 186          
BLAST of mRNA_H-elongata_contig1048.396.1 vs. uniprot
Match: A0A482SBK5_9ARCH (Protein kinase domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBK5_9ARCH)

HSP 1 Score: 158 bits (400), Expect = 6.170e-46
Identity = 80/146 (54.79%), Postives = 99/146 (67.81%), Query Frame = 1
Query:    1 RLNIFLEYLDKGSVRDRLEREGRMSEAETAGITKKFLAGLAYLHSQGITHRDIKGANVLLSRGGAVKLADFGTSKLVNQESVMSGLKGTPHWMAPEVIRDQQQGHEGWIRADVWSVGCMVIEMLTGKRPWPDVPNAVAVMFKIARG 438
            R+NI +EY   GS+R   +REG +SE ETA      LAGLAYLH++G  HRDIK AN LL     VKLADFG SK    ES++SGLKGTP+WMAPE IR    G   W+RAD+WS+GC V+EMLT + P+ +  N +  M+KIA G
Sbjct:   86 RINIVMEYAVYGSLRQFYQREGALSEDETAYCVVDILAGLAYLHAKGFAHRDIKCANCLLFPQSRVKLADFGASKRFESESIVSGLKGTPNWMAPETIRGDCAG-PAWMRADIWSLGCSVVEMLTAQMPYAEYENPLTAMYKIAGG 230          
BLAST of mRNA_H-elongata_contig1048.396.1 vs. uniprot
Match: A0A7S3HB88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HB88_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.000e-45
Identity = 79/149 (53.02%), Postives = 99/149 (66.44%), Query Frame = 1
Query:    1 RLNIFLEYLDKGSVRDRLEREGRMSEAETAGITKKFLAGLAYLHSQGITHRDIKGANVLLSRGGAVKLADFGTSKLVNQESVMSGLKGTPHWMAPEVIRDQQQGHEGWIRADVWSVGCMVIEMLTGKRPWPDVPNAVAVMFKIARGMTP 447
            R+ IFLEY D+GS+R      G +SE++     +  +AGL YLH  GI HRDIK AN LL   G VKLADFG SK    +S++SGLKGTPHWMAPEVI+  Q    GW++ADVWS+GC V+EM T K P+ +  N +  M+KIA G  P
Sbjct:   78 RVFIFLEYADRGSLRHFYSNRGPLSESQITFCLQGIVAGLNYLHENGIAHRDIKCANCLLGSEGVVKLADFGASKRFESDSIVSGLKGTPHWMAPEVIKGTQMT-TGWMKADVWSLGCTVVEMFTAKVPYAEYENPMTAMYKIASGEVP 225          
BLAST of mRNA_H-elongata_contig1048.396.1 vs. uniprot
Match: A0A6T5VXF8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5VXF8_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.660e-44
Identity = 79/149 (53.02%), Postives = 104/149 (69.80%), Query Frame = 1
Query:    1 RLNIFLEYLDKGSVRDRLEREGRMSEAETAGITKKFLAGLAYLHSQGITHRDIKGANVLLSRGGAVKLADFGTSKLVNQESVMSGLKGTPHWMAPEVIRDQQQGHEGWIRADVWSVGCMVIEMLTGKRPWPDVPNAVAVMFKIARGMTP 447
            ++NIFLE+   GS++   +++G M E +    TK+ L GL YLH++GI HRDIK AN LL+  G VKLADFG SK    ES++SGLKGTP+WMAPEVIR  Q    GW++ADVWSVGC ++EMLT K P+ +  N +  M+ IA G +P
Sbjct:   81 KINIFLEFATLGSLQSYYKKKGPMKENQAINCTKQILNGLEYLHNKGIAHRDIKCANCLLTSKGVVKLADFGASKKYESESIVSGLKGTPNWMAPEVIRGTQMT-SGWMKADVWSVGCTIVEMLTAKLPFSEYDNPMTAMYHIANGKSP 228          
BLAST of mRNA_H-elongata_contig1048.396.1 vs. uniprot
Match: A0A7S1CQA9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQA9_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.480e-43
Identity = 81/145 (55.86%), Postives = 100/145 (68.97%), Query Frame = 1
Query:    4 LNIFLEYLDKGSVRDRLEREGRMSEAETAGITKKFLAGLAYLHSQGITHRDIKGANVLLSRGGAVKLADFGTSKLVNQESVMS--GLKGTPHWMAPEVIRDQQQGHEGWIRADVWSVGCMVIEMLTGKRPWPDVPNAVAVMFKIA 432
            L+IFLEY+  GS+R  + R G++ EA     T++ L GL YLH  GI HRDIKGANVL++  G +KLADFG SK +  +SV +  GLKGTP WMAPEVI++QQ    GW +AD+WSVGC VIEM TGK PW    N V  M+ IA
Sbjct:  724 LSIFLEYVPGGSIRSLVNRFGKLDEAVVRVYTRQLLLGLEYLHRHGIAHRDIKGANVLVANDGTIKLADFGASKQLGHKSVTANTGLKGTPLWMAPEVIKEQQSAR-GWKKADIWSVGCTVIEMATGKPPWSHFSNPVTAMYHIA 867          
BLAST of mRNA_H-elongata_contig1048.396.1 vs. uniprot
Match: A0A7S4E6M1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E6M1_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.040e-42
Identity = 79/159 (49.69%), Postives = 105/159 (66.04%), Query Frame = 1
Query:    1 RLNIFLEYLDKGSVRDRLEREGRMSEAETAGITKKFLAGLAYLHSQGITHRDIKGANVLLSRG-GAVKLADFGTSKLVNQESV------MSGLKGTPHWMAPEVIRDQQQGH-EGWIRADVWSVGCMVIEMLTGKRPWPDVPNAVAVMFKIARGMTPPI 453
            +L+IF+E+   GSVR  L+ +G + E+  A    + L GL YLH+ GI HRD+KGANVLLS      +LADFG SK + +          SGL+GTP WMAPE+IR +  G  EGWI +DVWSVGC ++EM TG+ PWP  PN +A MF I++G+ PP+
Sbjct:   92 KLSIFMEFAPGGSVRQLLKAKGALDESICASYIDQVLQGLEYLHTNGIAHRDVKGANVLLSHDLTGAQLADFGASKRIEKLGEDASGGGASGLRGTPRWMAPELIRGELSGDLEGWILSDVWSVGCTLVEMATGQLPWPQFPNPMAAMFHISQGIAPPL 250          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1048.396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLC6_9PHAE4.760e-6268.42Protein kinase domain-containing protein n=2 Tax=E... [more]
I2CPJ7_NANGC1.680e-6161.18Ha-tagged protein kinase domain of mitogen-activat... [more]
A0A835YVT9_9STRA1.830e-6161.18Ha-tagged protein kinase (Fragment) n=1 Tax=Tribon... [more]
A0A7S2RVT5_9STRA4.690e-5362.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0Y0R9_AURAN1.400e-4853.80Protein kinase domain-containing protein (Fragment... [more]
A0A482SBK5_9ARCH6.170e-4654.79Protein kinase domain-containing protein (Fragment... [more]
A0A7S3HB88_9STRA2.000e-4553.02Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6T5VXF8_9STRA1.660e-4453.02Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S1CQA9_9STRA2.480e-4355.86Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S4E6M1_9STRA2.040e-4249.69Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1048contigH-elongata_contig1048:10414..11146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.7
Seed ortholog evalue1.5e-53
Seed eggNOG ortholog2880.D8LT93
EggNOG free text desc.MAP kinase kinase kinase activity
EggNOG OGsKOG0198@1,KOG0198@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMEKK and related serine/threonine protein kinases
Ec32 orthologEc-12_005680.1
Exons2
Model size462
Cds size462
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929580.7567446-CDS-H-elongata_contig1048:10413..107131622929580.7567446-CDS-H-elongata_contig1048:10413..10713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1048 10414..10713 -
1691679079.0022144-CDS-H-elongata_contig1048:10413..107131691679079.0022144-CDS-H-elongata_contig1048:10413..10713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1048 10414..10713 -
1622929580.8671498-CDS-H-elongata_contig1048:10984..111461622929580.8671498-CDS-H-elongata_contig1048:10984..11146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1048 10985..11146 -
1691679079.0110161-CDS-H-elongata_contig1048:10984..111461691679079.0110161-CDS-H-elongata_contig1048:10984..11146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1048 10985..11146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1048.396.1prot_H-elongata_contig1048.396.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1048 10414..11146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1048.396.1

>prot_H-elongata_contig1048.396.1 ID=prot_H-elongata_contig1048.396.1|Name=mRNA_H-elongata_contig1048.396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
RLNIFLEYLDKGSVRDRLEREGRMSEAETAGITKKFLAGLAYLHSQGITH
RDIKGANVLLSRGGAVKLADFGTSKLVNQESVMSGLKGTPHWMAPEVIRD
QQQGHEGWIRADVWSVGCMVIEMLTGKRPWPDVPNAVAVMFKIARGMTPP
IDR*
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mRNA from alignment at H-elongata_contig1048:10414..11146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1048.396.1 ID=mRNA_H-elongata_contig1048.396.1|Name=mRNA_H-elongata_contig1048.396.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=733bp|location=Sequence derived from alignment at H-elongata_contig1048:10414..11146- (Himanthalia elongata Himel1 dioecious)
CGCCTCAACATTTTCCTTGAGTACCTTGACAAGGGCAGCGTTCGCGATCG CTTGGAGAGGGAGGGGCGAATGTCGGAGGCCGAGACCGCTGGCATCACGA AGAAGTTTCTCGCCGGGTTGGCGTACCTTCACTCGCAAGGCATCACGCAC CGCGACATCAAGGTGGGGATGCCGATGCACCATAATCGAGTATATCGTTC GCACGAAGGGCCTCATCGCGTTGTTAGAATATATCATTGGCCGAGGATGC GGCAAGATACGGCCCACCGAGTTAGCTGCCGATCGAGTCCATTTTTTCTT TGGGTATAATGCTATTTTCAGCCACCGTCGCAGGGTAGCAGCGAACCCTC CCCTCTCCGAGCCTCCCACCGCTTCACCCTTTCGAATTTTATTTCCCTGG CCGCGATTGCCACACGACGTGGCACATGAACAGGGCGCCAACGTGCTGCT CTCCCGAGGCGGTGCCGTCAAGCTCGCGGATTTCGGCACGAGCAAGCTGG TGAACCAGGAGAGCGTCATGAGCGGCCTCAAGGGAACACCCCATTGGATG GCCCCAGAGGTCATCCGGGATCAGCAGCAAGGGCACGAGGGGTGGATCCG GGCGGACGTTTGGAGTGTTGGCTGCATGGTGATCGAGATGCTCACGGGCA AGAGGCCGTGGCCAGACGTTCCCAACGCGGTTGCTGTAATGTTCAAGATC GCGAGGGGGATGACGCCCCCGATAGACCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig1048:10414..11146-

>mRNA_H-elongata_contig1048.396.1 ID=mRNA_H-elongata_contig1048.396.1|Name=mRNA_H-elongata_contig1048.396.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig1048:10414..11146- (Himanthalia elongata Himel1 dioecious)
CGCCTCAACATTTTCCTTGAGTACCTTGACAAGGGCAGCGTTCGCGATCG
CTTGGAGAGGGAGGGGCGAATGTCGGAGGCCGAGACCGCTGGCATCACGA
AGAAGTTTCTCGCCGGGTTGGCGTACCTTCACTCGCAAGGCATCACGCAC
CGCGACATCAAGCGCCTCAACATTTTCCTTGAGTACCTTGACAAGGGCAG
CGTTCGCGATCGCTTGGAGAGGGAGGGGCGAATGTCGGAGGCCGAGACCG
CTGGCATCACGAAGAAGTTTCTCGCCGGGTTGGCGTACCTTCACTCGCAA
GGCATCACGCACCGCGACATCAAGGGCGCCAACGTGCTGCTCTCCCGAGG
CGGTGCCGTCAAGCTCGCGGATTTCGGCACGAGCAAGCTGGTGAACCAGG
AGAGCGTCATGAGCGGCCTCAAGGGAACACCCCATTGGATGGCCCCAGAG
GTCATCCGGGATCAGCAGCAAGGGCACGAGGGGTGGATCCGGGCGGACGT
TTGGAGTGTTGGCTGCATGGTGATCGAGATGCTCACGGGCAAGAGGCCGT
GGCCAGACGTTCCCAACGCGGTTGCTGTAATGTTCAAGATCGCGAGGGGG
ATGACGCCCCCGATAGACCGGTGAGGCGCCAACGTGCTGCTCTCCCGAGG
CGGTGCCGTCAAGCTCGCGGATTTCGGCACGAGCAAGCTGGTGAACCAGG
AGAGCGTCATGAGCGGCCTCAAGGGAACACCCCATTGGATGGCCCCAGAG
GTCATCCGGGATCAGCAGCAAGGGCACGAGGGGTGGATCCGGGCGGACGT
TTGGAGTGTTGGCTGCATGGTGATCGAGATGCTCACGGGCAAGAGGCCGT
GGCCAGACGTTCCCAACGCGGTTGCTGTAATGTTCAAGATCGCGAGGGGG
ATGACGCCCCCGATAGACCGGTGA
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