mRNA_H-elongata_contig10478.393.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10478.393.1
Unique NamemRNA_H-elongata_contig10478.393.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10478.393.1 vs. uniprot
Match: D7FYN8_ECTSI (AN1 and C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYN8_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.470e-31
Identity = 83/158 (52.53%), Postives = 97/158 (61.39%), Query Frame = 1 
Query:  295 VLMPANKQRCAQCARETCLAHRFPDSHNCTGGGSWNGRRSSSGAAGAAAANRRG-RVEATRPMSLREKAAQKRTATRS----NGNTVKGTAERRRRQDASGVGREAAGVTAAGSGSGQGGEQCPLCGTRFGDVGSLVAHVEATHSERSRASAFGGGGG 753
            VL P N QRCA C +ETCL HRFPDSHNC+     + R    G+A AAAA R   +   +RPMSLREKAAQ R A  S    + NT + TA+RRRR++ +   R          GSG   EQCP CG  FGD+GSLVAHVEA HSE  +  A GGGGG
Sbjct:  108 VLGPTNTQRCASCGKETCLTHRFPDSHNCSASSRGDAR----GSAAAAAARRMAAQANQSRPMSLREKAAQNRAAASSRRDADANTARATADRRRRENPAAQARSF-------GGSGGQSEQCPQCGATFGDIGSLVAHVEAFHSEGQQFRAHGGGGG 254
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10478.393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYN8_ECTSI1.470e-3152.53AN1 and C2H2 zinc finger protein n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10478contigH-elongata_contig10478:4283..7887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue4.8e-28
Seed eggNOG ortholog2880.D7FYN8
GOsGO:0001101,GO:0008150,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0010200,GO:0010243,GO:0033993,GO:0042221,GO:0042493,GO:0050896,GO:0097305,GO:1901698,GO:1901700
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG3183@1,KOG3183@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAN1 and C2H2 zinc finger protein
Ec32 orthologEc-17_000160.1
Exons5
Model size758
Cds size594
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10478.393.1prot_H-elongata_contig10478.393.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10478 4445..7887 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929580.4155636-UTR-H-elongata_contig10478:4282..44441622929580.4155636-UTR-H-elongata_contig10478:4282..4444Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10478 4283..4444 +
1691679078.8807442-UTR-H-elongata_contig10478:4282..44441691679078.8807442-UTR-H-elongata_contig10478:4282..4444Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10478 4283..4444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929580.4298756-CDS-H-elongata_contig10478:4444..45761622929580.4298756-CDS-H-elongata_contig10478:4444..4576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10478 4445..4576 +
1691679078.8939958-CDS-H-elongata_contig10478:4444..45761691679078.8939958-CDS-H-elongata_contig10478:4444..4576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10478 4445..4576 +
1622929580.4413466-CDS-H-elongata_contig10478:5370..54471622929580.4413466-CDS-H-elongata_contig10478:5370..5447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10478 5371..5447 +
1691679078.9079273-CDS-H-elongata_contig10478:5370..54471691679078.9079273-CDS-H-elongata_contig10478:5370..5447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10478 5371..5447 +
1622929580.4586625-CDS-H-elongata_contig10478:6164..63361622929580.4586625-CDS-H-elongata_contig10478:6164..6336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10478 6165..6336 +
1691679078.9173155-CDS-H-elongata_contig10478:6164..63361691679078.9173155-CDS-H-elongata_contig10478:6164..6336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10478 6165..6336 +
1622929580.4698668-CDS-H-elongata_contig10478:6828..70021622929580.4698668-CDS-H-elongata_contig10478:6828..7002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10478 6829..7002 +
1691679078.9309778-CDS-H-elongata_contig10478:6828..70021691679078.9309778-CDS-H-elongata_contig10478:6828..7002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10478 6829..7002 +
1622929580.4821868-CDS-H-elongata_contig10478:7848..78871622929580.4821868-CDS-H-elongata_contig10478:7848..7887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10478 7849..7887 +
1691679078.944975-CDS-H-elongata_contig10478:7848..78871691679078.944975-CDS-H-elongata_contig10478:7848..7887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10478 7849..7887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10478.393.1

>prot_H-elongata_contig10478.393.1 ID=prot_H-elongata_contig10478.393.1|Name=mRNA_H-elongata_contig10478.393.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
MGGHPRKGNIASHVSTLTTGADNEIVLAVDNPDGASRTFPVAYHVLMPAN
KQRCAQCARETCLAHRFPDSHNCTGGGSWNGRRSSSGAAGAAAANRRGRV
EATRPMSLREKAAQKRTATRSNGNTVKGTAERRRRQDASGVGREAAGVTA
AGSGSGQGGEQCPLCGTRFGDVGSLVAHVEATHSERSRASAFGGGGGG
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mRNA from alignment at H-elongata_contig10478:4283..7887+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10478.393.1 ID=mRNA_H-elongata_contig10478.393.1|Name=mRNA_H-elongata_contig10478.393.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3605bp|location=Sequence derived from alignment at H-elongata_contig10478:4283..7887+ (Himanthalia elongata Himel1 dioecious)
TACCATCAACGGAAATTGTGGCTTGCACCCCACGGGACCGGTGGTAGACA
GCGGCTCAAGAACTTGAGCTTAATAGGGTGTGTACGACACACTGGGTTGA
ATCGGTTGGCGAGAATCCAGGACGGCCTCAGCTTGAGGACGGGTGTAAGA
GGGAAGTGATTCATGGGGGGCCACCCGCGCAAGGGGAATATAGCATCCCA
TGTGTCAACGCTGACGACCGGCGCGGACAACGAAATTGTACTTGCCGTTG
ACAATCCCGACGGCGCTTCTCGAACCTTCCCGGTGGCTTACCACGTAAGG
GCCAAAAACCTGATTGGAGCTGTGTTTCCGTGATATGACCTGGTGTTATT
GGAAAATACTTCGCGGATTGATGCAGGTGGGAGTTGCACAGGAGTACGGA
TTGCATTAACGCCGTGGACTCCAATGGGAAAAAGCCGCAGAAGCAGAGGC
AAGTGACGTCATTGTAGAGACGAAATAATAATGAGTGAATTTCGTTTTAT
TAGCGACAAGAGTTTGTGGTAAAAGGTAGTAATGTACACATTCGAACCTG
ACGATAGTTGGTCCCCTGGACTACACCTCTCACGGTGTGCTAAGAAGGCG
TATTGAATGTTCGGAGGGTTGGAAGGAGTTCATGTGTTTTTTTTTTTTAA
GAAAAGAGGGAATAAAACGAATAAATGGATTCATGAATCAATGAATATTA
ATGAATGAAAGAAGGACTGTATTTATAACTGAGAAAATGAATAAGGGAAC
GAAGGAATGTCTGTTTTTCTCGAACGATGAACGCTTGGGGAGTGTTGCTG
GAAGTACTCGATGAAGGTCTAGCTCTATCAAGTTCTCGCGCCTCGTCCTA
TTACGTTTTGAAGCATCAGAGCTTGTGGTGAGCTTGTCTCATGATCGTCG
TGCGTTGTTGTCCCGTAACTAGAACTAGATCCATGTGGGATCAAAAACTA
GACATGAAAAACAAGAAATAATATAAAAAGCGCTCTATAAAAAAAGACAC
GAACATTTTTTTTTTTCATTGTTTTTTCAAGTACACCAAACCTTTTTGTC
GGTTGTTGAGCAGGTGTCCGGCGCCAGGCTGTCGAGAGGTGCTCATGCCG
GCCAACAAGCAGCGATGCGCCCAGTGTGCCAGGGAGACTTGCTTGGCGCA
CAGATTCCCGGACAGGTAGGTCTTGCGTGTTTTGTATGTGTGTGTGTGTA
GTAGATGTACGACGCTTTCTCTGCACGATACACGAGTTTTGTTCCGTGGC
ACAACTTTTGCTCGCAAGCGACGAAGAAAGGCGCGCGCGGAAGGATTTGC
GGGGGATGGTGCCGCCGGACCCTCCTTGCCCGTTGCCACTCTGGGTACAG
CACTCCAGGAGTAAAAGGCGCGATCCTTAAACGAACAGAAATAGTTCAAC
CGTATTGCTGGCGAACGAACGAGCGGTAACCTCTCACGACCATGACGCAG
TGAAACGAGAGCTGTACCGCGGTACTCTGGGTCTCCTGCACGTGGGTAAG
GTTGTGACCCTTGGATGTCACCCCCCTGCGGTCGCCCGCCGTGACCCCCC
CCCCTACCTCCCTCCTCCTGGCACTTATTCATCTGTGGCTTTTCCAAGTT
GTGTTCGATATACGTACGGTAGATACAAAACGAAAACAGTACCGCGTGCG
AACCGCATGTCGTTTCCCCTCCCTGCACCCCTTTGTTTTCAGTACAGTAC
AAGATCCCTCACCTTAGCTTACCCTATGTTAGGTTATCTTTCGTAATGGT
TGCGTTGGTTTCCTCTCCCTTGCGAAACCGAATCATCAAACAAACTCGGT
AAAACCTCCGTGTTACCGTCCCGTCCCGTCCTGTCCCGTCCTGTCCCCCA
CAACAAATATACGCCTCGTTGCGGATGATCAGCCACAATTGCACCGGCGG
CGGGTCCTGGAACGGTCGGCGCAGCTCGAGTGGAGCTGCTGGTGCTGCTG
CAGCCAACCGAAGAGGTCGCGTAGAGGCGACACGACCGATGTCGCTGAGG
GAGAAGGCGGCCCAAAAGAGGACCGCCACGCGTTCGAACGGCAACACTGT
TAAGGTGAACGCATGGTTTACAGGGGACGGCTGTTGTTTTATTGTTATTT
TGTTTTCGGGGAGGGGGTTAAGAGAGGACATAAACGCGCGAAAAATCCGC
GTGCGGTGTGTCGTCTCCTTGGTGCAAATAGCTTGAGTACGTAGCACGTA
AGGTCGTCGATTTGACCTGTTTCTGGCTGTGGCTCTGTTTGTGTGTGTTA
AATTTCAGATACCGCGCAATCCGGCCCTGTCATGCTAGTCATTTTAGGAT
ACTCGCTGTTTGGCGTCATAGTCCTTATAATGGTGTGATATGTGTGTGTC
TGTGTGTGTGTGTGTGTTTGTTTGTTTGTTTTTTTTTCAGGCTTTTTTTT
TGCCTGACATACAAGTCTTGAATATACACCTTCTACTGCCGAATTTACCT
TTCGAAAGAAATGAATTCGAGAGAGACAAAAATAAAAAACGGAAACATTT
AACGGGTGGTGGCCGATTTGTCCTGCCCGTGCCTATGTTCCCACAGGGGA
CCGCTGAGCGAAGACGGAGACAGGATGCCTCAGGTGTTGGTCGAGAAGCA
GCCGGGGTGACGGCGGCGGGCAGTGGTTCGGGGCAGGGCGGTGAGCAGTG
CCCGCTGTGTGGGACGAGGTTTGGCGACGTGGGCTCGCTCGTAGCGCACG
TGGAGGCAACTCACTCCGAGGTACCGGTATGCAGAGTACTATATATATAT
ATATATTATTATAGTAGCATGCCGTCGGATAGGTTCTAGAGCGTTGCTGT
CACGCCGCACTCGATTATAGGTTGTGGTAAGAGAGAGTGACCGGGACGGA
ATAACGCATGTCGTATAGACACTAGATCCACCTTCCCACGCTTTTCTCCC
CTCTTTTGCTCAATCAACAAGTAGTACGTAAAGACGCCAAAACCCCCTCT
TTTTCTTTTTCTTTTTCTTTTTTATTATGAATGAATTCATACCTGGTACG
TATGTTTTATTTATTTTTAAAACCTTGAACTCATTCCAACCCTCCGACCA
TCCACACCTTCTTAGCACCATGACCACTGCTTGTCGTATTTAAGACTTTT
TTTTTTTTTTTTTTAGCAGCGAATATGTGGCTCGCGCTGCACCCCTCGAA
CCCTGCCACCTTTCTCGTCGCCGCCCCCACCCCAATCCTCCCCCACCCCC
CACCCCCTCACGCCTGATCAGAGGTTTTCGTTACAAATAGCATTGATCCT
AGAATTACTATAATAGCATAACAGGGGACGGATTGCGCAGTTATTTTTTT
ATTTAATAAAATCACACAAACACACACACACACACACACACACATACACA
CATCACTGATCCCCCATACGTAGGGAGGATCTATACGAGTAGCATATAAA
TATTAGTATGTCAGGGCCGGGTTGTGGGGGTATTTGGAATTTCATAATAC
ATACACACGCACTTACATATACATATACCCACGACCAAATTGTGCAACAT
GGCCCGTCAAGCCATCTAGCAGAACCAACGCCCTTGTCTACCTTCGCCCG
ACCATGGCTTCCGCAGCGATCCCGAGCGTCGGCATTTGGCGGCGGGGGCG
GGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig10478:4283..7887+

>mRNA_H-elongata_contig10478.393.1 ID=mRNA_H-elongata_contig10478.393.1|Name=mRNA_H-elongata_contig10478.393.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig10478:4283..7887+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGGCCACCCGCGCAAGGGGAATATAGCATCCCATGTGTCAACGCT
GACGACCGGCGCGGACAACGAAATTGTACTTGCCGTTGACAATCCCGACG
GCGCTTCTCGAACCTTCCCGGTGGCTTACCACATGGGGGGCCACCCGCGC
AAGGGGAATATAGCATCCCATGTGTCAACGCTGACGACCGGCGCGGACAA
CGAAATTGTACTTGCCGTTGACAATCCCGACGGCGCTTCTCGAACCTTCC
CGGTGGCTTACCACGTGCTCATGCCGGCCAACAAGCAGCGATGCGCCCAG
TGTGCCAGGGAGACTTGCTTGGCGCACAGATTCCCGGACAGGTGCTCATG
CCGGCCAACAAGCAGCGATGCGCCCAGTGTGCCAGGGAGACTTGCTTGGC
GCACAGATTCCCGGACAGCCACAATTGCACCGGCGGCGGGTCCTGGAACG
GTCGGCGCAGCTCGAGTGGAGCTGCTGGTGCTGCTGCAGCCAACCGAAGA
GGTCGCGTAGAGGCGACACGACCGATGTCGCTGAGGGAGAAGGCGGCCCA
AAAGAGGACCGCCACGCGTTCGAACGGCAACACTGTTAAGCCACAATTGC
ACCGGCGGCGGGTCCTGGAACGGTCGGCGCAGCTCGAGTGGAGCTGCTGG
TGCTGCTGCAGCCAACCGAAGAGGTCGCGTAGAGGCGACACGACCGATGT
CGCTGAGGGAGAAGGCGGCCCAAAAGAGGACCGCCACGCGTTCGAACGGC
AACACTGTTAAGGGGACCGCTGAGCGAAGACGGAGACAGGATGCCTCAGG
TGTTGGTCGAGAAGCAGCCGGGGTGACGGCGGCGGGCAGTGGTTCGGGGC
AGGGCGGTGAGCAGTGCCCGCTGTGTGGGACGAGGTTTGGCGACGTGGGC
TCGCTCGTAGCGCACGTGGAGGCAACTCACTCCGAGGGGACCGCTGAGCG
AAGACGGAGACAGGATGCCTCAGGTGTTGGTCGAGAAGCAGCCGGGGTGA
CGGCGGCGGGCAGTGGTTCGGGGCAGGGCGGTGAGCAGTGCCCGCTGTGT
GGGACGAGGTTTGGCGACGTGGGCTCGCTCGTAGCGCACGTGGAGGCAAC
TCACTCCGAGCGATCCCGAGCGTCGGCATTTGGCGGCGGGGGCGGGGGCC
GATCCCGAGCGTCGGCATTTGGCGGCGGGGGCGGGGGC
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