mRNA_H-elongata_contig104681.386.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig104681.386.1
Unique NamemRNA_H-elongata_contig104681.386.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig104681.386.1 vs. uniprot
Match: D7G5E2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E2_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.310e-16
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 HADNAMVNLNVWLTPDSANLGSTETDDGGGLTVFHAKPPGVERFTWYTYE 150
            HAD A +NLN+WLT DSANLGS ETDDGGGLTVFHAKPPG   F  +  E
Sbjct: 1104 HADTAEINLNIWLTDDSANLGSVETDDGGGLTVFHAKPPGDWGFQEFNQE 1153
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BLAST of mRNA_H-elongata_contig104681.386.1 vs. uniprot
Match: A0A6H5LAR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAR2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 4.170e-16
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 HADNAMVNLNVWLTPDSANLGSTETDDGGGLTVFHAKPPG 120
            HAD A +NLN+WLT DSANLGS ETDDGGGLTVFHAKPPG
Sbjct:  363 HADTAEINLNIWLTDDSANLGSVETDDGGGLTVFHAKPPG 402
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BLAST of mRNA_H-elongata_contig104681.386.1 vs. uniprot
Match: A0A7S2LVN8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LVN8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 7.340e-9
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    1 HADNAMVNLNVWLTPDSANLGSTETDDGGGLTVFHAKPPGVERFTWYTYESPR 159
            HAD A VN+N+W+TPD ANL S    + GGL +F AKPP    FT Y  ++ R
Sbjct:   23 HADQAAVNVNLWITPDDANLDS----NSGGLVIFTAKPPSDWDFTAYNTDTER 71
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BLAST of mRNA_H-elongata_contig104681.386.1 vs. uniprot
Match: A0A7S2A6T5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6T5_TRICV)

HSP 1 Score: 57.0 bits (136), Expect = 2.130e-8
Identity = 27/53 (50.94%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:    1 HADNAMVNLNVWLTPDSANLGSTETDDGGGLTVFHAKPPGVERFTWYTYESPR 159
            HAD A VN+N+W+TPD ANL      D GGL VF AKPP    F  Y  ++ R
Sbjct:   99 HADQAAVNVNLWITPDDANL----DPDSGGLVVFTAKPPSDWNFEMYNADADR 147
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BLAST of mRNA_H-elongata_contig104681.386.1 vs. uniprot
Match: A0A7S1YH78_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YH78_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.290e-8
Identity = 27/51 (52.94%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:    1 HADNAMVNLNVWLTPDSANLGSTETDDGGGLTVFHAKPPGVERFTWYTYES 153
            HAD A VN+N+WLTPDSANL      D GGL +F AKPP    F  Y  ++
Sbjct:  100 HADQAAVNVNLWLTPDSANL----DPDSGGLVIFTAKPPANWNFEKYNTDT 146
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BLAST of mRNA_H-elongata_contig104681.386.1 vs. uniprot
Match: A0A7S1VKH0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VKH0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.720e-8
Identity = 27/51 (52.94%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:    1 HADNAMVNLNVWLTPDSANLGSTETDDGGGLTVFHAKPPGVERFTWYTYES 153
            HAD A VN+N+WLTPDSANL      D GGL +F AKPP    F  Y  ++
Sbjct:  229 HADQAAVNVNLWLTPDSANL----DPDSGGLVIFTAKPPANWNFEKYNTDT 275
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BLAST of mRNA_H-elongata_contig104681.386.1 vs. uniprot
Match: A0A813D9R1_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813D9R1_POLGL)

HSP 1 Score: 56.6 bits (135), Expect = 5.860e-8
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 HADNAMVNLNVWLTPDSANLGSTETDDGGGLTVFHAKPP 117
            HAD+A VN+N+WLTPDSANL      DGGGL VF A PP
Sbjct:   66 HADDAAVNVNIWLTPDSANL----DPDGGGLVVFDAAPP 100
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BLAST of mRNA_H-elongata_contig104681.386.1 vs. uniprot
Match: UPI001A0C64B8 (Tetratricopeptide repeat protein n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI001A0C64B8)

HSP 1 Score: 55.1 bits (131), Expect = 2.070e-7
Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 HADNAMVNLNVWLTPDSANLGSTETDDGGGLTVFHAKPPGVERFTWYTYESPRT 162
            HAD A +NLN W+TPDSAN       + GGL V+HAK P    F  Y +++ RT
Sbjct:  387 HADGARINLNFWVTPDSAN----RNPETGGLLVYHAKAPADWDFEDYNHDTDRT 436
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BLAST of mRNA_H-elongata_contig104681.386.1 vs. uniprot
Match: A0A7S1UWY4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWY4_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 7.220e-7
Identity = 25/51 (49.02%), Postives = 31/51 (60.78%), Query Frame = 1 
Query:    1 HADNAMVNLNVWLTPDSANLGSTETDDGGGLTVFHAKPPGVERFTWYTYES 153
            HAD+A VN+N+W+TPD ANL      D GGL VF  KPP    F  Y  ++
Sbjct:  324 HADDAAVNVNIWITPDEANL----DPDSGGLVVFKTKPPEDWSFREYNAQA 370
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BLAST of mRNA_H-elongata_contig104681.386.1 vs. uniprot
Match: A0A7S4IWZ0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IWZ0_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 7.220e-7
Identity = 26/47 (55.32%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:    1 HADNAMVNLNVWLTPDSANLGSTETDDGGGLTVFHAKPPGVERFTWY 141
            HAD A VN+N+WLTPD ANL      D GGL +F AKPP    F  Y
Sbjct:  330 HADQAAVNVNLWLTPDEANL----DPDSGGLVIFTAKPPDDWDFEEY 372
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig104681.386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5E2_ECTSI2.310e-1672.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LAR2_9PHAE4.170e-1685.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2LVN8_9STRA7.340e-950.94Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2A6T5_TRICV2.130e-850.94Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1YH78_9STRA3.290e-852.94Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1VKH0_9STRA5.720e-852.94Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A813D9R1_POLGL5.860e-866.67Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
UPI001A0C64B82.070e-748.15Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
A0A7S1UWY4_9STRA7.220e-749.02Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4IWZ0_9STRA7.220e-755.32Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig104681contigH-elongata_contig104681:774..935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue6.6e-11
Seed eggNOG ortholog2880.D7G5E2
EggNOG OGs2CY2I@1,2S1H1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_008740.1
Exons1
Model size162
Cds size147
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929579.7127597-UTR-H-elongata_contig104681:773..7881622929579.7127597-UTR-H-elongata_contig104681:773..788Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104681 774..788 +
1691679078.4530237-UTR-H-elongata_contig104681:773..7881691679078.4530237-UTR-H-elongata_contig104681:773..788Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104681 774..788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929579.726823-CDS-H-elongata_contig104681:788..9351622929579.726823-CDS-H-elongata_contig104681:788..935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104681 789..935 +
1691679078.4643474-CDS-H-elongata_contig104681:788..9351691679078.4643474-CDS-H-elongata_contig104681:788..935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104681 789..935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig104681.386.1prot_H-elongata_contig104681.386.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig104681 789..935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig104681.386.1

>prot_H-elongata_contig104681.386.1 ID=prot_H-elongata_contig104681.386.1|Name=mRNA_H-elongata_contig104681.386.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MVNLNVWLTPDSANLGSTETDDGGGLTVFHAKPPGVERFTWYTYESPRT
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mRNA from alignment at H-elongata_contig104681:774..935+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig104681.386.1 ID=mRNA_H-elongata_contig104681.386.1|Name=mRNA_H-elongata_contig104681.386.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig104681:774..935+ (Himanthalia elongata Himel1 dioecious)
CATGCGGATAACGCAATGGTGAACCTAAACGTATGGCTAACTCCAGACTC
AGCAAACCTGGGGAGCACAGAAACAGATGACGGAGGAGGCTTGACGGTTT
TCCACGCCAAGCCTCCAGGTGTGGAGAGGTTTACTTGGTACACATATGAA
AGTCCGAGAACA
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Coding sequence (CDS) from alignment at H-elongata_contig104681:774..935+

>mRNA_H-elongata_contig104681.386.1 ID=mRNA_H-elongata_contig104681.386.1|Name=mRNA_H-elongata_contig104681.386.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig104681:774..935+ (Himanthalia elongata Himel1 dioecious)
ATGGTGAACCTAAACGTATGGCTAACTCCAGACTCAGCAAACCTGGGGAG
CACAGAAACAGATGACGGAGGAGGCTTGACGGTTTTCCACGCCAAGCCTC
CAGGTGTGGAGAGGTTTACTTGGTACACATATGAAAGTCCGAGAACAATG
GTGAACCTAAACGTATGGCTAACTCCAGACTCAGCAAACCTGGGGAGCAC
AGAAACAGATGACGGAGGAGGCTTGACGGTTTTCCACGCCAAGCCTCCAG
GTGTGGAGAGGTTTACTTGGTACACATATGAAAGTCCGAGAACA
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