mRNA_H-elongata_contig104645.382.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig104645.382.1
Unique NamemRNA_H-elongata_contig104645.382.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig104645.382.1 vs. uniprot
Match: D7G288_ECTSI (D-lactate dehydrogenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G288_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.680e-18
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 EEHGPGAMHAMRVIKRSLDPDGLMNPGKVLAHQRDPKTGRLVICA 135
            EEHG GAMH MRVIKR LDP GLMNPGKVLAH+RDP+TGRLV+CA
Sbjct:  389 EEHGDGAMHTMRVIKRGLDPGGLMNPGKVLAHRRDPQTGRLVLCA 433
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BLAST of mRNA_H-elongata_contig104645.382.1 vs. uniprot
Match: A0A835YUA6_9STRA (Putative d-lactate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.790e-8
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 EEHGPGAMHAMRVIKRSLDPDGLMNPGKVLAHQRDPKTGRLVIC 132
            +E    A+  M  IK ++DP+G+MNPGKV+ H+RDP TGRLV C
Sbjct:  452 KELNGAAIRTMVSIKNAIDPNGIMNPGKVVPHKRDPVTGRLVAC 495
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BLAST of mRNA_H-elongata_contig104645.382.1 vs. uniprot
Match: A0A437P762_9HYPH (FAD-binding protein n=1 Tax=Methylobacterium oryzihabitans TaxID=2499852 RepID=A0A437P762_9HYPH)

HSP 1 Score: 52.0 bits (123), Expect = 1.780e-6
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:    4 EHGPGAMHAMRVIKRSLDPDGLMNPGKVLA 93
            EHGP A+  MR +KRS+DPDG+MNPGKV+A
Sbjct:  441 EHGPEALDLMRTLKRSIDPDGIMNPGKVVA 470
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BLAST of mRNA_H-elongata_contig104645.382.1 vs. uniprot
Match: A0A2E4US92_9GAMM (FAD-binding oxidoreductase n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E4US92_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 1.780e-6
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    4 EHGPGAMHAMRVIKRSLDPDGLMNPGKVL 90
            EHGPGA+H MR IKR++DP  +MNPGKVL
Sbjct:  437 EHGPGAVHLMRSIKRTIDPQNIMNPGKVL 465
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BLAST of mRNA_H-elongata_contig104645.382.1 vs. uniprot
Match: UPI001D06D276 (FAD-binding oxidoreductase n=1 Tax=Halorubellus salinus TaxID=755309 RepID=UPI001D06D276)

HSP 1 Score: 50.8 bits (120), Expect = 4.570e-6
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:    4 EHGPGAMHAMRVIKRSLDPDGLMNPGKVL 90
            E GPGA+ AMR +KR+LDPDG++NPGKVL
Sbjct:  430 ERGPGAVDAMRRVKRALDPDGILNPGKVL 458
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BLAST of mRNA_H-elongata_contig104645.382.1 vs. uniprot
Match: A0A0C6FPV6_9HYPH (Lactate dehydrogenase n=19 Tax=Methylobacterium TaxID=407 RepID=A0A0C6FPV6_9HYPH)

HSP 1 Score: 50.8 bits (120), Expect = 4.570e-6
Identity = 20/30 (66.67%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    4 EHGPGAMHAMRVIKRSLDPDGLMNPGKVLA 93
            EHGP A++ MRV+KR++DPD +MNPGKV+A
Sbjct:  442 EHGPEALNLMRVLKRAIDPDNIMNPGKVVA 471
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BLAST of mRNA_H-elongata_contig104645.382.1 vs. uniprot
Match: UPI00194E2435 (FAD-binding protein n=1 Tax=Microvirga sp. BT689 TaxID=2778731 RepID=UPI00194E2435)

HSP 1 Score: 50.4 bits (119), Expect = 6.250e-6
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    4 EHGPGAMHAMRVIKRSLDPDGLMNPGKVLAHQRDPKTG 117
            EHG GA+  MR++K +LDP G+MNPGKVL  +  P  G
Sbjct:  436 EHGEGAVEVMRLLKAALDPQGIMNPGKVLPGESTPVDG 473
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BLAST of mRNA_H-elongata_contig104645.382.1 vs. uniprot
Match: A0A6N7GLH1_9HYPH (FAD-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GLH1_9HYPH)

HSP 1 Score: 50.1 bits (118), Expect = 8.550e-6
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:    4 EHGPGAMHAMRVIKRSLDPDGLMNPGKVLA 93
            EHG  A+ AMR IKR+LDPDG+MNPGK+++
Sbjct:  434 EHGRAALDAMRTIKRALDPDGIMNPGKIVS 463
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BLAST of mRNA_H-elongata_contig104645.382.1 vs. uniprot
Match: A0A1G7CBL5_9PROT (D-lactate dehydrogenase (Cytochrome) n=1 Tax=Rhodospira trueperi TaxID=69960 RepID=A0A1G7CBL5_9PROT)

HSP 1 Score: 49.7 bits (117), Expect = 1.170e-5
Identity = 18/29 (62.07%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:    4 EHGPGAMHAMRVIKRSLDPDGLMNPGKVL 90
            EHGP A++ MR +K++LDPDG+MNPGK++
Sbjct:  431 EHGPDALNLMRAVKQALDPDGIMNPGKIV 459
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BLAST of mRNA_H-elongata_contig104645.382.1 vs. uniprot
Match: UPI000A9FBBD5 (FAD-binding protein n=2 Tax=Ectothiorhodospiraceae TaxID=72276 RepID=UPI000A9FBBD5)

HSP 1 Score: 48.9 bits (115), Expect = 2.190e-5
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    1 EEHGPGAMHAMRVIKRSLDPDGLMNPGKVLAHQ 99
            EEHG  A+  M++IKR+LDPD LMNPGKVL  +
Sbjct:  431 EEHGQEAVEVMQLIKRALDPDNLMNPGKVLPDE 463
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig104645.382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G288_ECTSI1.680e-1884.44D-lactate dehydrogenase, putative n=1 Tax=Ectocarp... [more]
A0A835YUA6_9STRA7.790e-854.55Putative d-lactate dehydrogenase n=1 Tax=Tribonema... [more]
A0A437P762_9HYPH1.780e-670.00FAD-binding protein n=1 Tax=Methylobacterium oryzi... [more]
A0A2E4US92_9GAMM1.780e-672.41FAD-binding oxidoreductase n=2 Tax=Gammaproteobact... [more]
UPI001D06D2764.570e-672.41FAD-binding oxidoreductase n=1 Tax=Halorubellus sa... [more]
A0A0C6FPV6_9HYPH4.570e-666.67Lactate dehydrogenase n=19 Tax=Methylobacterium Ta... [more]
UPI00194E24356.250e-655.26FAD-binding protein n=1 Tax=Microvirga sp. BT689 T... [more]
A0A6N7GLH1_9HYPH8.550e-666.67FAD-binding protein n=1 Tax=Hyphomicrobiales bacte... [more]
A0A1G7CBL5_9PROT1.170e-562.07D-lactate dehydrogenase (Cytochrome) n=1 Tax=Rhodo... [more]
UPI000A9FBBD52.190e-563.64FAD-binding protein n=2 Tax=Ectothiorhodospiraceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig104645contigH-elongata_contig104645:93..230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue3.1e-11
Seed eggNOG ortholog2880.D7G288
Preferred nameDLD1
KEGG rclassRC00044
KEGG koko:K00102
KEGG ReactionR00197
KEGG Pathwayko00620,map00620
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003973,GO:0004457,GO:0004458,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006081,GO:0006082,GO:0006089,GO:0008144,GO:0008150,GO:0008152,GO:0008720,GO:0008891,GO:0009056,GO:0009438,GO:0009987,GO:0016020,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016898,GO:0016899,GO:0017076,GO:0019154,GO:0019752,GO:0019866,GO:0030554,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0035639,GO:0036094,GO:0042180,GO:0042182,GO:0042802,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046185,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0051596,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901575,GO:1901615,GO:1901616,GO:1903457
EggNOG free text desc.cytokinin dehydrogenase activity
EggNOG OGsCOG0277@1,KOG1231@2759
Ec32 ortholog descriptionFAD-binding, type 2, subdomain 1
Ec32 orthologEc-16_002060.1
EC1.1.2.4
COG Functional cat.C
BiGG ReactioniMM904.YDL174C,iND750.YDL174C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size117
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929579.19457-CDS-H-elongata_contig104645:92..2091622929579.19457-CDS-H-elongata_contig104645:92..209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104645 93..209 -
1691679078.3088973-CDS-H-elongata_contig104645:92..2091691679078.3088973-CDS-H-elongata_contig104645:92..209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104645 93..209 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929579.209955-UTR-H-elongata_contig104645:209..2301622929579.209955-UTR-H-elongata_contig104645:209..230Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104645 210..230 -
1691679078.3190763-UTR-H-elongata_contig104645:209..2301691679078.3190763-UTR-H-elongata_contig104645:209..230Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104645 210..230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig104645.382.1prot_H-elongata_contig104645.382.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig104645 93..209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig104645.382.1

>prot_H-elongata_contig104645.382.1 ID=prot_H-elongata_contig104645.382.1|Name=mRNA_H-elongata_contig104645.382.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
MHAMRVIKRSLDPDGLMNPGKVLAHQRDPKTGRLVICA*
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mRNA from alignment at H-elongata_contig104645:93..230-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig104645.382.1 ID=mRNA_H-elongata_contig104645.382.1|Name=mRNA_H-elongata_contig104645.382.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig104645:93..230- (Himanthalia elongata Himel1 dioecious)
GAGGAACACGGGCCTGGAGCCATGCACGCGATGAGGGTCATCAAGCGCTC
CCTCGACCCAGACGGTCTGATGAATCCGGGAAAGGTTCTCGCGCACCAGA
GAGACCCGAAAACAGGCCGCCTGGTCATCTGCGCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig104645:93..230-

>mRNA_H-elongata_contig104645.382.1 ID=mRNA_H-elongata_contig104645.382.1|Name=mRNA_H-elongata_contig104645.382.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig104645:93..230- (Himanthalia elongata Himel1 dioecious)
ATGCACGCGATGAGGGTCATCAAGCGCTCCCTCGACCCAGACGGTCTGAT
GAATCCGGGAAAGGTTCTCGCGCACCAGAGAGACCCGAAAACAGGCCGCC
TGGTCATCTGCGCCTGAATGCACGCGATGAGGGTCATCAAGCGCTCCCTC
GACCCAGACGGTCTGATGAATCCGGGAAAGGTTCTCGCGCACCAGAGAGA
CCCGAAAACAGGCCGCCTGGTCATCTGCGCCTGA
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