mRNA_H-elongata_contig10459.380.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10459.380.1
Unique NamemRNA_H-elongata_contig10459.380.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10459.380.1 vs. uniprot
Match: D7FMK6_ECTSI (ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMK6_ECTSI)

HSP 1 Score: 818 bits (2112), Expect = 2.270e-283
Identity = 443/574 (77.18%), Postives = 482/574 (83.97%), Query Frame = 1
Query:    1 VSILRGLKERYEVHHGVRLQDAALVSAAQLSHRYIADRFLPDKAIDLVDEAAAKLNIEASQFINISHFMQ*IPQLH*YMVASAFKALEIIFNNLLVSPKTLL**F*IKFAQVTSKPQVIDEVDRRLIQLEMEKLSLRKEIRPDALKRVEQIDHEMEVLKDKQENLMRTWNEERGRVGKMQALKEKLDALKVEIEHAERGYDLNKAAELKYAVMPKLQKELEEEEDSVDLDD-DNTSSNGNRMLRDEVTPDDIAAIVASWTGIPPGKLMESEREKLLHLEDELHRRVIGQDEAVRVVAEAIQRSRAGLNDPNKPIASLIFLGPTGVGKTELCKALAAYMFDTEEAMVRIDMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTDAIRQRPYSVVLFDEMEKAHPDVFNIMLQLLDDGRVTDSKGNVVNFCNSIVIFTSNVGGQTILDVSSNQDSGAREEMRSRVMAAMRDGFRPEFLNRIDEFVIFERLSVLDMRKITSLELKKVSGRLADKDVTLEATDAALDFLAEVGYDAAYGARPLKRAIQREVETVLAKRIISGEITPGVHLVADIINERLVI 1719
            VSILRGLKERYEVHHGVRLQDA+LV+AAQLSHRYIADRFLPDKAIDLVDEAAAKLNIE                                                     VTSKPQ+IDEVDRRLIQLEMEKLSLRKE R DALKR+EQID EM  L++KQE L   W+ ERGRVGK+Q LKEK+DALKVEIEHAERGYDLNKAAEL YAVMPKLQKELEEEE  +D D  D+ +  G+RMLRDEVTPDDIA++VASWTGIPPGKLM SER+KL++LEDELH+RV+GQDEAVRVV+EAIQRSRAGLNDP+KPIASLIFLGPTGVGKTELCKALAAYMFDTE+A+VRIDMSEYMEKF+VSRLVGAPPGYVGYEEGGQLTDAIRQRPYSVVLFDEMEKAHPDVFNIMLQLLDDGRVTDSKGNVVNFCN I+IFTSNVG Q+ILDVSS +  G REEMR+RVMAAMR+GFRPEFLNRIDEFVIF+RLS  DMR I+ LELKKV+ RLAD+D+TLEA+D+ALDFL+ VGYD AYGARPLKR IQREVETVLAKRIISGEI  G  LVAD+INERLVI
Sbjct:  355 VSILRGLKERYEVHHGVRLQDASLVAAAQLSHRYIADRFLPDKAIDLVDEAAAKLNIE-----------------------------------------------------VTSKPQMIDEVDRRLIQLEMEKLSLRKETRADALKRIEQIDDEMAELQEKQEGLTSAWDLERGRVGKVQTLKEKIDALKVEIEHAERGYDLNKAAELTYAVMPKLQKELEEEEAVLDKDGADSHTDGGSRMLRDEVTPDDIASVVASWTGIPPGKLMSSERDKLMNLEDELHQRVVGQDEAVRVVSEAIQRSRAGLNDPDKPIASLIFLGPTGVGKTELCKALAAYMFDTEDALVRIDMSEYMEKFAVSRLVGAPPGYVGYEEGGQLTDAIRQRPYSVVLFDEMEKAHPDVFNIMLQLLDDGRVTDSKGNVVNFCNCIIIFTSNVGSQSILDVSSAEGGGVREEMRNRVMAAMREGFRPEFLNRIDEFVIFDRLSAEDMRHISGLELKKVTLRLADRDITLEASDSALDFLSSVGYDPAYGARPLKRTIQREVETVLAKRIISGEIASGDVLVADVINERLVI 875          
BLAST of mRNA_H-elongata_contig10459.380.1 vs. uniprot
Match: A0A835Z9T5_9STRA (ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9T5_9STRA)

HSP 1 Score: 686 bits (1769), Expect = 5.390e-232
Identity = 378/575 (65.74%), Postives = 432/575 (75.13%), Query Frame = 1
Query:    1 VSILRGLKERYEVHHGVRLQDAALVSAAQLSHRYIADRFLPDKAIDLVDEAAAKLNIEASQFINISHFMQ*IPQLH*YMVASAFKALEIIFNNLLVSPKTLL**F*IKFAQVTSKPQVIDEVDRRLIQLEMEKLSLRKEIRPDALKRVEQIDHEMEVLKDKQENLMRTWNEERGRVGKMQALKEKLDALKVEIEHAERGYDLNKAAELKYAVMPKLQKELEEEEDSVDLDDDNTSSNGNRMLRDEVTPDDIAAIVASWTGIPPGKLMESEREKLLHLEDELHRRVIGQDEAVRVVAEAIQRSRAGLNDPNKPIASLIFLGPTGVGKTELCKALAAYMFDTEEAMVRIDMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTDAIRQRPYSVVLFDEMEKAHPDVFNIMLQLLDDGRVTDSKGNVVNFCNSIVIFTSNVGGQTILDVSSNQDSGAREEMRSRVMAAMRDGFRPEFLNRIDEFVIFERLSVLDMRKITSLELKKVSGRLADKDVTLEATDAALDFLAEVGYDAAYGARPLKRAIQREVETVLAKRIISGEITPGVHLVADIINERLVITV 1725
            VSILRGLKERYEVHH VR+QD+ALV+AAQLS+RYI DRFLPDKAIDLVDEAAAKLNIE                                                     VTSKP VIDEVDRRL+QLEMEKLSL+ E RPD  +R   I+ +M  L+DKQ+ L   W++ER  VGK+  LK ++DAL+VEIE AER YDLNKAAELKYA +PKL KEL  EE+   L D    +   R+LRDEVTP+DIA +VA WTGIP  KL+ S+REKLLHL+D L  RV+GQD+A +VVAEAIQRSRAGLNDPNKPIAS +FLGPTGVGKTEL K LAAYMFD+EEA+VRIDMSEYMEKF+VSRL+GAPPGYVGYEEGGQLTDA+R+RPYSV+LFDEMEKAH DVFN+MLQ+LDDGRVTDSKGNVVNFCN ++IFTSNVG + ILD++   +    EEMRSRVMAAMR  FRPEFLNR+DEFVIF  L    MR IT+LELKKV  RLADK +TL+AT+ ALDFLAEVG D  YGARPLKRAIQREVET +AK II+G   PG  + A I NERL + V
Sbjct:  338 VSILRGLKERYEVHHKVRIQDSALVAAAQLSNRYITDRFLPDKAIDLVDEAAAKLNIE-----------------------------------------------------VTSKPTVIDEVDRRLVQLEMEKLSLKNEKRPDTNRRTRDIETQMAELRDKQKGLTEVWDKERAAVGKVTGLKARIDALRVEIETAEREYDLNKAAELKYATLPKLLKELAAEEER--LGDGEGGAAAGRILRDEVTPEDIAGVVAMWTGIPTTKLLASDREKLLHLQDVLAERVVGQDDATQVVAEAIQRSRAGLNDPNKPIASFVFLGPTGVGKTELAKTLAAYMFDSEEALVRIDMSEYMEKFAVSRLIGAPPGYVGYEEGGQLTDAVRRRPYSVILFDEMEKAHGDVFNVMLQILDDGRVTDSKGNVVNFCNCVIIFTSNVGSRDILDLAG--EPSRNEEMRSRVMAAMRQDFRPEFLNRLDEFVIFSALGKPQMRGITALELKKVQKRLADKRITLQATEEALDFLAEVGSDPVYGARPLKRAIQREVETPMAKGIIAGTFAPGDVVQASIDNERLALKV 855          
BLAST of mRNA_H-elongata_contig10459.380.1 vs. uniprot
Match: A0A6H5KCM5_9PHAE (HSP100 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM5_9PHAE)

HSP 1 Score: 667 bits (1720), Expect = 4.050e-231
Identity = 348/420 (82.86%), Postives = 384/420 (91.43%), Query Frame = 1
Query:  463 MEVLKDKQENLMRTWNEERGRVGKMQALKEKLDALKVEIEHAERGYDLNKAAELKYAVMPKLQKELEEEEDSVDLDD-DNTSSNGNRMLRDEVTPDDIAAIVASWTGIPPGKLMESEREKLLHLEDELHRRVIGQDEAVRVVAEAIQRSRAGLNDPNKPIASLIFLGPTGVGKTELCKALAAYMFDTEEAMVRIDMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTDAIRQRPYSVVLFDEMEKAHPDVFNIMLQLLDDGRVTDSKGNVVNFCNSIVIFTSNVGGQTILDVSSNQDSGAREEMRSRVMAAMRDGFRPEFLNRIDEFVIFERLSVLDMRKITSLELKKVSGRLADKDVTLEATDAALDFLAEVGYDAAYGARPLKRAIQREVETVLAKRIISGEITPGVHLVADIINERLVI 1719
            M  L++KQE L + W+ ERGRVGK+Q LKEK+DALKVEIEHAERGYDLNKAAEL YAVMPKLQKELE EE  +D D  D+ +  G+RMLRDEVTPDDIA++VASWTGIPPGKLM SER+KL++LED+LH+RV+GQDEAVRVV+EAIQRSRAGLNDP+KPIASLIFLGPTGVGKTELCKALAAYMFDTE+A+VRIDMSEYMEKF+VSRLVGAPPGYVGYEEGGQLTDAIRQRPYSVVLFDEMEKAHPDVFNIMLQLLDDGRVTDSKGNVVNFCN I+IFTSNVG Q+ILDVSS +  GAREEMRSRVMAAMR+GFRPEFLNRIDEFVIF+RLS  DMR I+ LELKKV+ RLAD+D+TLEA+D+ALDFL+ VGYD  YGARPLKR IQREVETVLAKRIISGEI  G  LVAD+INERLVI
Sbjct:    1 MAELQEKQEGLTKAWDLERGRVGKVQTLKEKIDALKVEIEHAERGYDLNKAAELTYAVMPKLQKELEAEEAVLDKDGADSDTDGGSRMLRDEVTPDDIASVVASWTGIPPGKLMSSERDKLMNLEDKLHQRVVGQDEAVRVVSEAIQRSRAGLNDPDKPIASLIFLGPTGVGKTELCKALAAYMFDTEDALVRIDMSEYMEKFAVSRLVGAPPGYVGYEEGGQLTDAIRQRPYSVVLFDEMEKAHPDVFNIMLQLLDDGRVTDSKGNVVNFCNCIIIFTSNVGSQSILDVSSAEGGGAREEMRSRVMAAMREGFRPEFLNRIDEFVIFDRLSAEDMRHISRLELKKVTLRLADRDITLEASDSALDFLSTVGYDPVYGARPLKRTIQREVETVLAKRIISGEIASGEILVADVINERLVI 420          
BLAST of mRNA_H-elongata_contig10459.380.1 vs. uniprot
Match: A0A7S3Y487_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y487_HETAK)

HSP 1 Score: 633 bits (1633), Expect = 1.030e-215
Identity = 340/559 (60.82%), Postives = 416/559 (74.42%), Query Frame = 1
Query:    1 VSILRGLKERYEVHHGVRLQDAALVSAAQLSHRYIADRFLPDKAIDLVDEAAAKLNIEASQFINISHFMQ*IPQLH*YMVASAFKALEIIFNNLLVSPKTLL**F*IKFAQVTSKPQVIDEVDRRLIQLEMEKLSLRKEIRPDALKRVEQIDHEMEVLKDKQENLMRTWNEERGRVGKMQALKEKLDALKVEIEHAERGYDLNKAAELKYAVMPKLQKELEEEEDSVDLDDDNTSSNGNRMLRDEVTPDDIAAIVASWTGIPPGKLMESEREKLLHLEDELHRRVIGQDEAVRVVAEAIQRSRAGLNDPNKPIASLIFLGPTGVGKTELCKALAAYMFDTEEAMVRIDMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTDAIRQRPYSVVLFDEMEKAHPDVFNIMLQLLDDGRVTDSKGNVVNFCNSIVIFTSNVGGQTILDVSSNQDSGAREEMRSRVMAAMRDGFRPEFLNRIDEFVIFERLSVLDMRKITSLELKKVSGRLADKDVTLEATDAALDFLAEVGYDAAYGARPLKRAIQREVETVLAKRIISGEITPG 1677
            VSILRGLKERYEVHHGVR++DAALV+AA LSHRYI+DRFLPDKAIDLVDEAAA+LNIE                                                     +TSKP ++DE+DRRLIQLEMEKLSL  ++  ++  R+  +D EM  L+ +Q  L + W  ERGRV  +++LKEK++ +K E+E AER Y+LNKAAELK+  +PKLQ+EL  EE +++      +     +L+DEVT DD+AA+V +WTG+P  K++ +E EKLL LED LH RVIGQDEAVR VAEA+QRSRAGL+DP KPIASL+FLGPTGVGKTELCKALAA +FD+EEA+VRIDMSEYMEK +VSRLVGAPPGYVGY+EGGQLTDAIR RPY+VVLFDEMEKAHPDVFN+MLQLLDDGR+TDSKGN VNF N+++IFTSN+G   ILDVS + D   REEMR+RVM AM+  FRPEFLNR+DE+VIF+ L    +R+I  LEL+KV+ RLA+K++ L+  + ALD +AEVG+D  YGARP+KRAIQRE ET LAK +I GE  PG
Sbjct:   65 VSILRGLKERYEVHHGVRIRDAALVAAATLSHRYISDRFLPDKAIDLVDEAAARLNIE-----------------------------------------------------ITSKPLLVDEIDRRLIQLEMEKLSLASDVSRESGLRLAALDKEMAELRVRQGELTQRWEAERGRVDNLKSLKEKIEQVKKEVEAAEREYELNKAAELKFQTLPKLQQELAAEEAALE------AQPAGALLKDEVTADDVAAVVEAWTGVPATKMLAAEGEKLLRLEDRLHERVIGQDEAVRAVAEAVQRSRAGLSDPQKPIASLVFLGPTGVGKTELCKALAAQLFDSEEALVRIDMSEYMEKHTVSRLVGAPPGYVGYDEGGQLTDAIRTRPYAVVLFDEMEKAHPDVFNLMLQLLDDGRLTDSKGNTVNFRNTVIIFTSNIGSADILDVSGDPDQ--REEMRARVMGAMKAAFRPEFLNRVDEYVIFDSLRKDQLREIVRLELRKVTARLAEKEIQLKVAEDALDHVAEVGFDPVYGARPMKRAIQREFETPLAKALIGGEYPPG 562          
BLAST of mRNA_H-elongata_contig10459.380.1 vs. uniprot
Match: UPI001687BBE9 (ATP-dependent chaperone ClpB n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=UPI001687BBE9)

HSP 1 Score: 622 bits (1605), Expect = 2.080e-207
Identity = 332/571 (58.14%), Postives = 421/571 (73.73%), Query Frame = 1
Query:    1 VSILRGLKERYEVHHGVRLQDAALVSAAQLSHRYIADRFLPDKAIDLVDEAAAKLNIEASQFINISHFMQ*IPQLH*YMVASAFKALEIIFNNLLVSPKTLL**F*IKFAQVTSKPQVIDEVDRRLIQLEMEKLSLRKEIRPDALKRVEQIDHEMEVLKDKQENLMRTWNEERGRVGKMQALKEKLDALKVEIEHAERGYDLNKAAELKYAVMPKLQKELEEEEDSVDLDDDNTSSNGNRMLRDEVTPDDIAAIVASWTGIPPGKLMESEREKLLHLEDELHRRVIGQDEAVRVVAEAIQRSRAGLNDPNKPIASLIFLGPTGVGKTELCKALAAYMFDTEEAMVRIDMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTDAIRQRPYSVVLFDEMEKAHPDVFNIMLQLLDDGRVTDSKGNVVNFCNSIVIFTSNVGGQTILDVSSNQDSGAREEMRSRVMAAMRDGFRPEFLNRIDEFVIFERLSVLDMRKITSLELKKVSGRLADKDVTLEATDAALDFLAEVGYDAAYGARPLKRAIQREVETVLAKRIISGEITPGVHLVADIINERL 1713
            +SILRGLKERYEVHHGV++ D+ALV+AA LS RYI+DRFLPDKAIDLVDEAAA+L +E                                                     +TSKP+ +DE+DR+++QLEME+LSLRKE  P +L+R+E+++ ++  LK++Q +L   W  E+  +  +QA+KE++D + VEI  AER YDLN+AAELKY  +  L ++LEE E  ++       ++G  +LR+EVT  DIA I++ WTGIP  KL+ESE +KLLHLEDELHRRVIGQDEAV  VA+AIQRSRAGL DPN+P+AS IFLGPTGVGKTEL KALAAY+FDTEEAMVRIDMSEYMEK +VSRL+GAPPGYVGY+EGGQLT+AIR+RPY+V+LFDE+EKAHPDVFN+MLQ+LDDGRVTD++G+ V+F N+I+I TSN+G Q ILD++   D G  EEMRSRVM AMR+ FRPEFLNRIDE +IF  L   ++R+I  L++ ++  RL D+ ++L+ +DAALDFLAEVGYD  YGARPLKRAIQRE+ET +AK I+  E   G  +  DI NERL
Sbjct:  349 ISILRGLKERYEVHHGVKISDSALVAAATLSTRYISDRFLPDKAIDLVDEAAARLKME-----------------------------------------------------ITSKPEELDEIDRKILQLEMERLSLRKESDPASLERLERLEKDLGNLKEEQHSLNAQWQSEKDVINTIQAIKEEIDRVNVEISQAERDYDLNRAAELKYGKLTDLHRQLEEAETQLEQ----AQTSGRTLLREEVTESDIAEIISKWTGIPISKLVESEMQKLLHLEDELHRRVIGQDEAVTAVADAIQRSRAGLADPNRPVASFIFLGPTGVGKTELAKALAAYLFDTEEAMVRIDMSEYMEKHAVSRLIGAPPGYVGYDEGGQLTEAIRRRPYAVILFDEIEKAHPDVFNVMLQILDDGRVTDAQGHTVDFKNTIIIMTSNIGSQYILDIAG--DEGRYEEMRSRVMEAMRNNFRPEFLNRIDEAIIFHGLQKSELRQIVKLQVARLEKRLGDRKMSLKLSDAALDFLAEVGYDPVYGARPLKRAIQRELETQIAKGILRAEFNDGDTIYVDIENERL 860          
BLAST of mRNA_H-elongata_contig10459.380.1 vs. uniprot
Match: D8G5A1_9CYAN (Chaperone protein ClpB n=2 Tax=Oscillatoriales TaxID=1150 RepID=D8G5A1_9CYAN)

HSP 1 Score: 621 bits (1602), Expect = 5.340e-207
Identity = 331/571 (57.97%), Postives = 424/571 (74.26%), Query Frame = 1
Query:    1 VSILRGLKERYEVHHGVRLQDAALVSAAQLSHRYIADRFLPDKAIDLVDEAAAKLNIEASQFINISHFMQ*IPQLH*YMVASAFKALEIIFNNLLVSPKTLL**F*IKFAQVTSKPQVIDEVDRRLIQLEMEKLSLRKEIRPDALKRVEQIDHEMEVLKDKQENLMRTWNEERGRVGKMQALKEKLDALKVEIEHAERGYDLNKAAELKYAVMPKLQKELEEEEDSVDLDDDNTSSNGNRMLRDEVTPDDIAAIVASWTGIPPGKLMESEREKLLHLEDELHRRVIGQDEAVRVVAEAIQRSRAGLNDPNKPIASLIFLGPTGVGKTELCKALAAYMFDTEEAMVRIDMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTDAIRQRPYSVVLFDEMEKAHPDVFNIMLQLLDDGRVTDSKGNVVNFCNSIVIFTSNVGGQTILDVSSNQDSGAREEMRSRVMAAMRDGFRPEFLNRIDEFVIFERLSVLDMRKITSLELKKVSGRLADKDVTLEATDAALDFLAEVGYDAAYGARPLKRAIQREVETVLAKRIISGEITPGVHLVADIINERL 1713
            +SILRGLKERYEVHHGV++ D+ALV+AA LS RYI+DRFLPDKAIDLVDEAAAKL +E                                                     +TSKP+ +DE+DR+++QLEME+LSL+KE  P +++R+E+++ ++   K++Q  L   W  E+G +G +Q +KE++D + +EI+ AER Y+LN+AAELKY  + +LQK+LEE E  +      T + G  +LR+EVT  DIA I++ WTGIP  KL+ESE +KLLHLEDELH+RVIGQDEAV  VA+AIQRSRAGL DPN+P+AS IFLGPTGVGKTEL KALAAY+FDTE+AMVRIDMSEYMEK +VSRL+GAPPGYVGY+EGGQLT+AIR+RPY+V+LFDE+EKAHPDVFNIMLQ+LDDGRVTD++G+ V+F N+++I TSNVG Q ILDV      G  EEMRSRVM AMR  FRPEFLNRIDE +IF+ LS  ++R+I  L++ ++  RLAD+ ++++ +D+ALDFLAEVGYD  YGARPLKRAIQRE+ET +AK I+ G+ + G  +  DI NERL
Sbjct:  349 ISILRGLKERYEVHHGVKISDSALVAAATLSTRYISDRFLPDKAIDLVDEAAAKLKME-----------------------------------------------------ITSKPEELDEIDRKILQLEMERLSLQKESAPASIERLERLEKDLANFKEQQSALNGQWQAEKGVLGNIQKIKEQIDKVNIEIQQAEREYNLNRAAELKYGTLTELQKQLEEAETKLTA----TQTTGQTLLREEVTESDIAEIISKWTGIPISKLVESEMQKLLHLEDELHKRVIGQDEAVTAVADAIQRSRAGLADPNRPVASFIFLGPTGVGKTELAKALAAYLFDTEDAMVRIDMSEYMEKHAVSRLIGAPPGYVGYDEGGQLTEAIRRRPYAVILFDEIEKAHPDVFNIMLQILDDGRVTDAQGHTVDFKNAVIIMTSNVGSQYILDVG-----GDDEEMRSRVMEAMRGTFRPEFLNRIDETIIFQGLSKQELRQIVKLQIGRLDKRLADRKMSIKLSDSALDFLAEVGYDPVYGARPLKRAIQRELETQIAKSILRGDFSDGDTIFVDIENERL 857          
BLAST of mRNA_H-elongata_contig10459.380.1 vs. uniprot
Match: A0A6J4PSP5_9CYAN (Chaperone protein ClpB n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A6J4PSP5_9CYAN)

HSP 1 Score: 619 bits (1596), Expect = 4.940e-206
Identity = 331/571 (57.97%), Postives = 420/571 (73.56%), Query Frame = 1
Query:    1 VSILRGLKERYEVHHGVRLQDAALVSAAQLSHRYIADRFLPDKAIDLVDEAAAKLNIEASQFINISHFMQ*IPQLH*YMVASAFKALEIIFNNLLVSPKTLL**F*IKFAQVTSKPQVIDEVDRRLIQLEMEKLSLRKEIRPDALKRVEQIDHEMEVLKDKQENLMRTWNEERGRVGKMQALKEKLDALKVEIEHAERGYDLNKAAELKYAVMPKLQKELEEEEDSVDLDDDNTSSNGNRMLRDEVTPDDIAAIVASWTGIPPGKLMESEREKLLHLEDELHRRVIGQDEAVRVVAEAIQRSRAGLNDPNKPIASLIFLGPTGVGKTELCKALAAYMFDTEEAMVRIDMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTDAIRQRPYSVVLFDEMEKAHPDVFNIMLQLLDDGRVTDSKGNVVNFCNSIVIFTSNVGGQTILDVSSNQDSGAREEMRSRVMAAMRDGFRPEFLNRIDEFVIFERLSVLDMRKITSLELKKVSGRLADKDVTLEATDAALDFLAEVGYDAAYGARPLKRAIQREVETVLAKRIISGEITPGVHLVADIINERL 1713
            +SILRGLKERYEVHHGV++ D+ALV+AA LS RYI+DRFLPDKAIDLVDEAAAKL +E                                                     +TSKP+ +DE+DRR++QLEME+LSL+KE  P + +R+E+++ E+   K++Q NL   W  E+  + ++Q++KE++D + +EI+ AER YDLN+AAELKY  +  LQ++L++ E  +      T ++G  +LR+EVT  DIA I++ WTGIP  KL++SE EKLLHLEDELH RVIGQDEAV  VA+AIQRSRAGL DPN+PIAS IFLGPTGVGKTEL KALAAYMFDTEEAMVRIDMSEYMEK SVSRL+GAPPGYVGY+EGGQLT+AIR+RPY+V+LFDE+EKAHPDVFN+MLQ+LDDGRVTDS+G  V+F NS++I TSN+G Q ILDV+   D     EMR RVM AMR+ FRPEFLNRIDE +IF  L   ++R+I  L+++++  RLAD+ ++L  +DAALDFLAEVG+D  +GARPLKRAIQRE+ET +AK+I+ GE   G  +  D+ NERL
Sbjct:  349 ISILRGLKERYEVHHGVKISDSALVAAATLSTRYISDRFLPDKAIDLVDEAAAKLKME-----------------------------------------------------ITSKPEELDEIDRRILQLEMERLSLQKETSPASKERLERLEKELADFKEEQANLNARWQSEKQMIDQIQSIKEEIDRVNIEIQEAERNYDLNRAAELKYGKLTDLQRQLQQAEAKLA----ETQTSGRSLLREEVTEADIAEIISKWTGIPITKLVQSEMEKLLHLEDELHHRVIGQDEAVTAVADAIQRSRAGLADPNRPIASFIFLGPTGVGKTELGKALAAYMFDTEEAMVRIDMSEYMEKHSVSRLIGAPPGYVGYDEGGQLTEAIRRRPYAVILFDEIEKAHPDVFNVMLQILDDGRVTDSQGRTVDFKNSVIIMTSNIGSQYILDVAG--DDSRYPEMRDRVMGAMRNSFRPEFLNRIDEVIIFHSLRKDELRQIVKLQVQRLKKRLADRKMSLRLSDAALDFLAEVGFDPVFGARPLKRAIQRELETQIAKQILRGEFNEGDTIFVDVENERL 860          
BLAST of mRNA_H-elongata_contig10459.380.1 vs. uniprot
Match: K9VL08_9CYAN (Chaperone protein ClpB n=16 Tax=Cyanobacteria TaxID=1117 RepID=K9VL08_9CYAN)

HSP 1 Score: 617 bits (1591), Expect = 2.450e-205
Identity = 329/571 (57.62%), Postives = 422/571 (73.91%), Query Frame = 1
Query:    1 VSILRGLKERYEVHHGVRLQDAALVSAAQLSHRYIADRFLPDKAIDLVDEAAAKLNIEASQFINISHFMQ*IPQLH*YMVASAFKALEIIFNNLLVSPKTLL**F*IKFAQVTSKPQVIDEVDRRLIQLEMEKLSLRKEIRPDALKRVEQIDHEMEVLKDKQENLMRTWNEERGRVGKMQALKEKLDALKVEIEHAERGYDLNKAAELKYAVMPKLQKELEEEEDSVDLDDDNTSSNGNRMLRDEVTPDDIAAIVASWTGIPPGKLMESEREKLLHLEDELHRRVIGQDEAVRVVAEAIQRSRAGLNDPNKPIASLIFLGPTGVGKTELCKALAAYMFDTEEAMVRIDMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTDAIRQRPYSVVLFDEMEKAHPDVFNIMLQLLDDGRVTDSKGNVVNFCNSIVIFTSNVGGQTILDVSSNQDSGAREEMRSRVMAAMRDGFRPEFLNRIDEFVIFERLSVLDMRKITSLELKKVSGRLADKDVTLEATDAALDFLAEVGYDAAYGARPLKRAIQREVETVLAKRIISGEITPGVHLVADIINERL 1713
            VSILRGLKERYEVHHGV++ D+ALV+AA LS RYI+DRFLPDKAIDLVDEAAAKL +E                                                     +TSKP+ +DE+DRR++QLEME+LSL+KE    +++R+E+++ ++  LK++Q  L   W  E+G +G +Q +KE++D + +EI+ AE  YDLN+AAELKY+ + +LQK+L++ E  +      T + G  +LR+EVT  DIA I++ WTGIP  KL+ESE +KLLHLEDELH+RVIGQDEAV  VA+AIQRSRAGL DPN+P+AS IFLGPTGVGKTEL KALAAY+FDTEEA+VRIDMSEYMEK +VSRL+GAPPGYVGY+EGGQLT+A+R+RPYSV+LFDE+EKAHPDVFNIMLQ+LDDGRVTD++G+ V+F NS++I TSNVG Q ILDV+     G  E MRSRVM AMR  FRPEFLNRIDE +IF  LS  ++R+I  L++K++  RLAD+ ++L+ +++A+DFLAE+GYD  YGARPLKR IQRE+ET +AK I+ G+   G  +  DI NERL
Sbjct:  350 VSILRGLKERYEVHHGVKISDSALVAAATLSTRYISDRFLPDKAIDLVDEAAAKLKME-----------------------------------------------------ITSKPEELDEIDRRILQLEMERLSLQKESNVASIERLERLEKDLANLKEQQSALNAQWQSEKGVIGSIQKIKEQIDKVNIEIQQAELKYDLNRAAELKYSKLTELQKQLQQAESQLSA----TQTTGKTLLREEVTEGDIAEIISKWTGIPISKLVESEMQKLLHLEDELHKRVIGQDEAVTAVADAIQRSRAGLADPNRPVASFIFLGPTGVGKTELAKALAAYLFDTEEAIVRIDMSEYMEKHAVSRLIGAPPGYVGYDEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNIMLQILDDGRVTDAQGHTVDFKNSVIIMTSNVGSQYILDVA-----GDNELMRSRVMEAMRGTFRPEFLNRIDEMIIFHGLSKTELRQIVLLQVKRLEKRLADRKMSLKLSESAIDFLAEIGYDPVYGARPLKRGIQRELETQMAKGILRGDFADGDTIFVDIENERL 858          
BLAST of mRNA_H-elongata_contig10459.380.1 vs. uniprot
Match: UPI0019E8636C (AAA family ATPase n=2 Tax=Nostocales TaxID=1161 RepID=UPI0019E8636C)

HSP 1 Score: 605 bits (1560), Expect = 6.470e-205
Identity = 323/571 (56.57%), Postives = 416/571 (72.85%), Query Frame = 1
Query:    1 VSILRGLKERYEVHHGVRLQDAALVSAAQLSHRYIADRFLPDKAIDLVDEAAAKLNIEASQFINISHFMQ*IPQLH*YMVASAFKALEIIFNNLLVSPKTLL**F*IKFAQVTSKPQVIDEVDRRLIQLEMEKLSLRKEIRPDALKRVEQIDHEMEVLKDKQENLMRTWNEERGRVGKMQALKEKLDALKVEIEHAERGYDLNKAAELKYAVMPKLQKELEEEEDSVDLDDDNTSSNGNRMLRDEVTPDDIAAIVASWTGIPPGKLMESEREKLLHLEDELHRRVIGQDEAVRVVAEAIQRSRAGLNDPNKPIASLIFLGPTGVGKTELCKALAAYMFDTEEAMVRIDMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTDAIRQRPYSVVLFDEMEKAHPDVFNIMLQLLDDGRVTDSKGNVVNFCNSIVIFTSNVGGQTILDVSSNQDSGAREEMRSRVMAAMRDGFRPEFLNRIDEFVIFERLSVLDMRKITSLELKKVSGRLADKDVTLEATDAALDFLAEVGYDAAYGARPLKRAIQREVETVLAKRIISGEITPGVHLVADIINERL 1713
            +SILRGLKERYE+HHGV++ D+ALV+AA LS RYI+DRFLPDKAIDLVDEAAA+L +E                                                     +TSKP+ +DE+DR+++QLEME+LSL+KE    + +R+E+++ E+  LK++Q  L   W  E+  + K+Q++KE++D + +EI+ AER YDLN+AAE KY  +  L ++LE  E  +         +G  +LR+EVT  DIA +++ WTGIP  KL+ESE+EKLLHLEDELH+RVIGQDEAV  VA+AIQRSRAGL DPN+PIAS IFLGPTGVGKTEL KALAAY+FDTEEAMVRIDMSEYMEK +VSRL+GAPPGYVGYEEGGQLT+AIR+RPY+VVLFDE+EKAHPDVFNI+LQ+LDDGRVTD++G+ V+F N+I+I TSN+G Q ILD++   D    +EMR RVM AMR+ FRPEFLNR+DE +IF  L   ++RKI  L++ ++  RL D+ ++L+ ++AALDFLAEVGYD  +GARPLKRAIQRE+ET +AK I+ GE   G  +  D+ NERL
Sbjct:   52 ISILRGLKERYELHHGVKISDSALVAAATLSSRYISDRFLPDKAIDLVDEAAARLKME-----------------------------------------------------ITSKPEELDEIDRKILQLEMERLSLQKESNAASRERLEKLEKELADLKEEQRALNAQWQSEKDIITKIQSVKEEIDRVNLEIQQAERNYDLNRAAEFKYGKLTDLHRKLEAAESELTQ----AQRSGKSLLREEVTESDIAEVISKWTGIPISKLVESEKEKLLHLEDELHQRVIGQDEAVTAVADAIQRSRAGLADPNRPIASFIFLGPTGVGKTELGKALAAYLFDTEEAMVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAIRRRPYAVVLFDEIEKAHPDVFNILLQILDDGRVTDAQGHTVDFKNTIIIMTSNIGSQFILDLAG--DDSRYDEMRHRVMEAMRNSFRPEFLNRVDEIIIFHGLQKEELRKIVQLQVNRLQQRLGDRKMSLKLSNAALDFLAEVGYDPVFGARPLKRAIQRELETPIAKAILRGEFNDGDTIFVDVENERL 563          
BLAST of mRNA_H-elongata_contig10459.380.1 vs. uniprot
Match: A0A4V0XUS2_PLAAG (Chaperone protein ClpB n=15 Tax=Oscillatoriales TaxID=1150 RepID=A0A4V0XUS2_PLAAG)

HSP 1 Score: 616 bits (1588), Expect = 7.560e-205
Identity = 333/572 (58.22%), Postives = 423/572 (73.95%), Query Frame = 1
Query:    1 VSILRGLKERYEVHHGVRLQDAALVSAAQLSHRYIADRFLPDKAIDLVDEAAAKLNIEASQFINISHFMQ*IPQLH*YMVASAFKALEIIFNNLLVSPKTLL**F*IKFAQVTSKPQVIDEVDRRLIQLEMEKLSLRKEIRPDALKRVEQIDHEMEVLKDKQENLMRTWNEERGRVGKMQALKEKLDALKVEIEHAERGYDLNKAAELKYAVMPKLQKELEEEEDSVDLDDDNTSSNGNRMLRDEVTPDDIAAIVASWTGIPPGKLMESEREKLLHLEDELHRRVIGQDEAVRVVAEAIQRSRAGLNDPNKPIASLIFLGPTGVGKTELCKALAAYMFDTEEAMVRIDMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTDAIRQRPYSVVLFDEMEKAHPDVFNIMLQLLDDGRVTDSKGNVVNFCNSIVIFTSNVGGQTILDVSSNQDSGAREEMRSRVMAAMRDGFRPEFLNRIDEFVIFERLSVLDMRKITSLELKKVSGRLADKDVTLEATDAALDFLAEVGYDAAYGARPLKRAIQREVETVLAKRIISGEITPGVHLVADIINERLV 1716
            +SILRGLKERYEVHHGV++ D+ALV+AA LS RYI+DRFLPDKAIDLVDE+AAKL +E                                                     +TSKP+ +DE+DRR++QLEME+LSL+KE    +L+R+E+I+ E+  LK +Q++L   W  E+  +  +Q++KE++D + +EI+ AER YDLN+AAELKY  M +L+K+L+  E  ++    NT  +G  +LR+EVT  DIA I++ WTGIP  KL+ESE +KLL LEDELH RVIGQDEAV  VA+AIQRSRAGL+DPN+P+AS IFLGPTGVGKTEL KALA+Y+FDTEEAMVRIDMSEYMEK +VSRL+GAPPGYVGY+EGGQLT+AIR+RPY+V+LFDE+EKAHPDVFNIMLQ+LDDGRVTD++G+ V+F NSI+I TSNVG Q ILDVS +      EEMRSRV+ AMR  FRPEFLNRIDE +IF  L   ++R+I  L+++++S RL ++ +TL+ +D+ALDFLAEVGYD  YGARPLKRAIQRE+ET +AK I+  E   G  +  DI NERLV
Sbjct:  349 ISILRGLKERYEVHHGVKISDSALVAAAVLSTRYISDRFLPDKAIDLVDESAAKLKME-----------------------------------------------------ITSKPEQLDEIDRRILQLEMERLSLKKESDAASLERLERIETELGTLKQEQQSLSSQWQSEKKVITDIQSIKEEIDRVNIEIQQAERNYDLNRAAELKYGKMEELKKKLKAIEAQLE----NTQISGKTLLREEVTEADIAEIISKWTGIPISKLVESEMQKLLTLEDELHHRVIGQDEAVTAVADAIQRSRAGLSDPNRPVASFIFLGPTGVGKTELAKALASYLFDTEEAMVRIDMSEYMEKHAVSRLIGAPPGYVGYDEGGQLTEAIRRRPYTVILFDEIEKAHPDVFNIMLQILDDGRVTDAQGHTVDFKNSIIIMTSNVGSQYILDVSGSDSQ--YEEMRSRVLEAMRASFRPEFLNRIDEMIIFHALQKSELRQIVCLQVERLSKRLVERKMTLKLSDSALDFLAEVGYDPVYGARPLKRAIQRELETPIAKAILRSEFVNGDTIFVDIENERLV 861          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10459.380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMK6_ECTSI2.270e-28377.18ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A835Z9T5_9STRA5.390e-23265.74ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A6H5KCM5_9PHAE4.050e-23182.86HSP100 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
A0A7S3Y487_HETAK1.030e-21560.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI001687BBE92.080e-20758.14ATP-dependent chaperone ClpB n=2 Tax=unclassified ... [more]
D8G5A1_9CYAN5.340e-20757.97Chaperone protein ClpB n=2 Tax=Oscillatoriales Tax... [more]
A0A6J4PSP5_9CYAN4.940e-20657.97Chaperone protein ClpB n=3 Tax=Cyanobacteria TaxID... [more]
K9VL08_9CYAN2.450e-20557.62Chaperone protein ClpB n=16 Tax=Cyanobacteria TaxI... [more]
UPI0019E8636C6.470e-20556.57AAA family ATPase n=2 Tax=Nostocales TaxID=1161 Re... [more]
A0A4V0XUS2_PLAAG7.560e-20558.22Chaperone protein ClpB n=15 Tax=Oscillatoriales Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10459contigH-elongata_contig10459:2925..9039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score706.4
Seed ortholog evalue8.4e-201
Seed eggNOG ortholog2880.D7FMK6
Preferred nameCLPB3
KEGG koko:K03695
KEGG Pathwayko04213,map04213
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006950,GO:0006986,GO:0006996,GO:0008150,GO:0009266,GO:0009408,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009657,GO:0009658,GO:0009941,GO:0009987,GO:0010033,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031967,GO:0031975,GO:0035966,GO:0042221,GO:0042623,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0071840
EggNOG free text desc.ATP binding
EggNOG OGsCOG0542@1,KOG1051@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATPase, AAA-type, core
Ec32 orthologEc-23_000660.1
Exons9
Model size2750
Cds size1368
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929578.9446652-UTR-H-elongata_contig10459:2924..39161622929578.9446652-UTR-H-elongata_contig10459:2924..3916Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10459 2925..3916 -
1691679078.1997397-UTR-H-elongata_contig10459:2924..39161691679078.1997397-UTR-H-elongata_contig10459:2924..3916Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10459 2925..3916 -
1622929579.0981245-UTR-H-elongata_contig10459:8649..90391622929579.0981245-UTR-H-elongata_contig10459:8649..9039Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10459 8650..9039 -
1691679078.2926056-UTR-H-elongata_contig10459:8649..90391691679078.2926056-UTR-H-elongata_contig10459:8649..9039Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10459 8650..9039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929578.9710815-CDS-H-elongata_contig10459:3916..41001622929578.9710815-CDS-H-elongata_contig10459:3916..4100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 3917..4100 -
1691679078.2137945-CDS-H-elongata_contig10459:3916..41001691679078.2137945-CDS-H-elongata_contig10459:3916..4100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 3917..4100 -
1622929578.9824615-CDS-H-elongata_contig10459:4336..45511622929578.9824615-CDS-H-elongata_contig10459:4336..4551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 4337..4551 -
1691679078.2226002-CDS-H-elongata_contig10459:4336..45511691679078.2226002-CDS-H-elongata_contig10459:4336..4551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 4337..4551 -
1622929578.9953291-CDS-H-elongata_contig10459:4888..50661622929578.9953291-CDS-H-elongata_contig10459:4888..5066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 4889..5066 -
1691679078.229841-CDS-H-elongata_contig10459:4888..50661691679078.229841-CDS-H-elongata_contig10459:4888..5066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 4889..5066 -
1622929579.0067213-CDS-H-elongata_contig10459:5768..59171622929579.0067213-CDS-H-elongata_contig10459:5768..5917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 5769..5917 -
1691679078.2376423-CDS-H-elongata_contig10459:5768..59171691679078.2376423-CDS-H-elongata_contig10459:5768..5917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 5769..5917 -
1622929579.0187182-CDS-H-elongata_contig10459:6398..64621622929579.0187182-CDS-H-elongata_contig10459:6398..6462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 6399..6462 -
1691679078.2462413-CDS-H-elongata_contig10459:6398..64621691679078.2462413-CDS-H-elongata_contig10459:6398..6462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 6399..6462 -
1622929579.0330794-CDS-H-elongata_contig10459:6785..69751622929579.0330794-CDS-H-elongata_contig10459:6785..6975Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 6786..6975 -
1691679078.253774-CDS-H-elongata_contig10459:6785..69751691679078.253774-CDS-H-elongata_contig10459:6785..6975Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 6786..6975 -
1622929579.0538223-CDS-H-elongata_contig10459:7281..74081622929579.0538223-CDS-H-elongata_contig10459:7281..7408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 7282..7408 -
1691679078.2675862-CDS-H-elongata_contig10459:7281..74081691679078.2675862-CDS-H-elongata_contig10459:7281..7408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 7282..7408 -
1622929579.0666597-CDS-H-elongata_contig10459:8098..82631622929579.0666597-CDS-H-elongata_contig10459:8098..8263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 8099..8263 -
1691679078.2751055-CDS-H-elongata_contig10459:8098..82631691679078.2751055-CDS-H-elongata_contig10459:8098..8263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 8099..8263 -
1622929579.0810137-CDS-H-elongata_contig10459:8553..86491622929579.0810137-CDS-H-elongata_contig10459:8553..8649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 8554..8649 -
1691679078.2823405-CDS-H-elongata_contig10459:8553..86491691679078.2823405-CDS-H-elongata_contig10459:8553..8649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10459 8554..8649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10459.380.1prot_H-elongata_contig10459.380.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10459 3917..8649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10459.380.1

>prot_H-elongata_contig10459.380.1 ID=prot_H-elongata_contig10459.380.1|Name=mRNA_H-elongata_contig10459.380.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=456bp
MEKLSLRKEIRPDALKRVEQIDHEMEVLKDKQENLMRTWNEERGRVGKMQ
ALKEKLDALKVEIEHAERGYDLNKAAELKYAVMPKLQKELEEEEDSVDLD
DDNTSSNGNRMLRDEVTPDDIAAIVASWTGIPPGKLMESEREKLLHLEDE
LHRRVIGQDEAVRVVAEAIQRSRAGLNDPNKPIASLIFLGPTGVGKTELC
KALAAYMFDTEEAMVRIDMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTDA
IRQRPYSVVLFDEMEKAHPDVFNIMLQLLDDGRVTDSKGNVVNFCNSIVI
FTSNVGGQTILDVSSNQDSGAREEMRSRVMAAMRDGFRPEFLNRIDEFVI
FERLSVLDMRKITSLELKKVSGRLADKDVTLEATDAALDFLAEVGYDAAY
GARPLKRAIQREVETVLAKRIISGEITPGVHLVADIINERLVITVRSMAP
ETSLA*
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mRNA from alignment at H-elongata_contig10459:2925..9039-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10459.380.1 ID=mRNA_H-elongata_contig10459.380.1|Name=mRNA_H-elongata_contig10459.380.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6115bp|location=Sequence derived from alignment at H-elongata_contig10459:2925..9039- (Himanthalia elongata Himel1 dioecious)
GTAAGTATTTTGCGAGGCCTGAAGGAACGCTACGAAGTTCACCATGGAGT TCGATTGCAGGATGCTGCTCTGGTGTCCGCAGCTCAACTAAGTCATCGAT ACATCGCTGATCGCTTCCTCCCTGACAAAGCTATCGACCTTGTCGATGAA GCCGCTGCAAAGCTCAACATAGAGGCAAGTCAATTTATAAACATTTCCCA CTTCATGCAATGAATCCCTCAACTGCATTGATACATGGTAGCTTCGGCAT TCAAAGCGCTTGAAATTATATTTAATAATCTTCTAGTTTCCCCGAAAACG CTTTTATAATAATTTTAAATCAAATTCGCGCAGGTGACAAGTAAGCCGCA GGTGATCGATGAGGTAGACAGGCGTCTGATACAGCTGGAGATGGAGAAGT TGTCACTTCGGAAAGAGATAAGACCCGACGCTCTCAAGCGTGTCGAGCAG ATCGATCATGAGATGGAAGTCCTCAAAGACAAGCAGGTGAAGTCATTTTT GGCAAGGCTGTAACATTCTTTGTACAGCACAAATCACCATTTGACATTAT CAAGATGGCCGCGAGGACGATCAACACTATCAAGATTGCCATTTGACGAA TATGAAGATATGAAGGTGCTCCGCTCTAAAGTTTTCGGAGGAATATTGAA ATGGCGTATGGCGTATGGCTATGGTAAGCTGGAGTCCAAATGTAATTAAG GATTGTTAACGTTTCTATCACCTATTCGTTCAAAAGGCTCCGGCGATGGC CAAAACTCCATTTGACTTTCTAACAGGAAAATCTGATGCGAACATGGAAT GAGGAACGAGGTCGCGTAGGCAAAATGCAGGCCCTGAAAGAGAAGCTCGA TGCCCTAAAGGTTGAGATCGAGCACGCTGAGAGAGGATACGACTTGAACA AGGCAGCTGAGCTCAAGTATGCCGTCATGCCCAAGCTACAGGTGGGCGTA CGTCATTACGTCCAGAGGCCACAAGTAGGCCAAATGTTGGCCATGAGTAG ACGTGGTGCTCGTTTTTCTGGGAAATTATGTCCCACCTCAACACGAGGCT TAGGTGTGTTGCTAGCAAGGCAAAATCTTCGGCTGAATCGTACATGGTTA CCGTCGGCTTTGACTCCAGCGTTAGCCCCCCGGTGATCCATGTAAGGCAC GAAATACTCTGATGCCATGATAGCGACACCCCAAACCAGCGATTTCTTCC ACGAGCGTTTAGCGATCTAACAGTAACAGTAACAGTAACAGTAACAATAA CACTAACAGCACTAACATGAGAGTAAAACATAGCGTAGCGTAGTTAAGTA TTATATTCATGGGAAACGGAAACGCAGCTATTATACACTTTTGCAGCTAT TATAGAGATTATAGAGTGTTCCCATAGAACTATTATAGTGTGTTCAAGTT CATCACGCCGATCGAGTCAAATAGTACAATCGTACAATCAAATCATACAT TTTTGGATGGTGATGCTTCAGACGTAATATTGCGTAATATTGCATTCGAT AATAACAGGTTGTAAAGGTGCCCGTTTGACACTTTATCTACTTGTATTGT AATGCTTGCTGATCTTGATTGCTCATCTTGATTGTGTTGCTTGCCCGCTG TATGACTATGTTGACTCTCTAAATTGACCAGAAAGAACTCGAGGAAGAAG AAGACTCGGTTGACTTGGATGATGATAACACTTCTTCAAATGGCAACCGT ATGTTACGAGACGAGGTTACTCCCGATGACATCGCTGCGATCGTTGCCTC GTGGACAGGTGCAATTTTAAAATATTGATTGCATGCTCTTCCCCATGATT GCACGCAATCTGAACCACAGTAAATAATGATATAATGAGGCGATGTAGTC TACTATTACAGTACTATAATAATACTATTTAATAATCATATTATACGAAG TACAGTAGTATTATTAATACTGTACTACGGCATTATAGTACTGTAGAGGG AACTGGAGTTATAACATGATTTAACTTGCGTTGAGAGGGTAAACCAAAGA CGTAACAGCAAATAGCGCTGCATATCAAATGCTCTCCCCCCTCCCCCCCT TCCCTCCTCTTCAGGAATACCACCCGGAAAGCTGATGGAGAGCGAACGTG AGAAGCTTCTCCATCTGGAGGACGAACTTCACCGACGTGTGATTGGTCAG GATGAAGCGGTTCGGGTAGTGGCCGAAGCCATTCAGCGCTCAAGGGCAGG CCTCAATGACCCAAACAAGCCAATTGCAAGCTTAATTTTCCTTGGTCCAA CCGGGTGAGGTTACCGTAGAAAGGTGCAGGATGAGGTAGAGAGGTCATAA TCCTTGGGACGGCCTGGCCTCCCTATGCATAAGGTGAATGGGAAGCCCTT TCGATGTCGAATTAATGCATCCTCGTGTATTACGTCTTGGACATTCGCCA ACGGCATGCGTTTAACGTTTTAGGCTAGTATACCTTACTGCTAATTATAC TAGCTCTAGTTGCTTCGTCTTATAGCCACAAATGGGAATAGTTGAGACAT TTCACTGGACGATGTCGCCGATCCATGTCGCATGCAGAACCTTACAACAC CGTGAGGTGTCGCCATCCGTTGGGCAGGGTGGGCAAGACTGAACTTTGCA AGGCGCTTGCTGCCTACATGTTCGACACCGAGGAAGCAATGGTGCGTACG AAACTTCACGGAACTTGACAGAACGGACATAACCACCCGCAGGGGTACCT CCCATCGATTTCACCACTGGAAGCACCCATATAATCAAGAGCCCAAGGTT GGCAAAAATTACTACTATTAATAGTACTCGTATACTGTACTGCATAGGAC GGGACGGGACGGGACGAGGATATAATCTAAATAGATAAACGGTGATGAAT GGTATCGGTATCGGTGACGGTAACGATAAACGGTGATGAATGGTAATGGT AATGGTAATGGTAACGGTAATGGATGGTTGAATCGCGACTAGGAAAGCTG AAGTCAGTATTGGACCTTGCCTACTACGCATGTGTTGGGTGAAGTACCAG TTCATGTGGACCACCTCTCGTGCCTGTGACACTAGAGGCGAGGGCCCATC ATGATGCTTCTATTGTACACTATATTTTTCTTTGATTGCTTCGCCAAAAA TAAATCTCCACCCGGGTTACAGGTCCGCATTGACATGTCAGAGTACATGG AGAAATTTTCGGTCTCCCGATTGGTTGGTGCACCGCCGGGATACGTTGGC TACGAGGAAGGTGGACAGCTTACCGACGCCATCAGACAGAGGCCTTACTC GGTCGTGCTATTCGATGAAATGTACGTTCGGCAAACCCTTATTATTCCCT ATGGTTGCTCGTTTCCATACGTGAAACGTGATATCAAATTTCATATCACT CGAAATTAAGCGTTTCTATCAAATGCAATCGTTTCTATAAAATGCAACCG TTTCTTGAAGCAGCTTGTTGCTAGTGTTGAGCGCTTGAATTACGAACGTG CTGTATGCTGTACCAATATTGGGTCTGGGAAAAGAAAGGCACACAAAAAT TGGTACTGTCCATGGGGTTACCTGAATAAGCCGCACCCGTTACTCAAGCT AACTTGAGGACTGCTGGCTCAGTGCCGGCGAACTATCGATGGTAAACGCT ATCGGTACGCAATTGCGTGACCTGATGAAATCGGGATTGGGCCGATGGCG GTTGATGGTAGAGATGGACGCCGTCGCGGAAAAATGAGAGGATCGAGAGG ATCCCGGGAGTACGCACCAGATTTAGCCTGGGTTTAGAGAAAGGGCAGGC TGACGCGGGGCGGGACTGCCGAACCAGTCTCGCGAGACCAGATTATCAGG CACGAATGGGGACAGGGAAAATCCATTTTTCCTGTTCAGCTGACCACAAA CAGGAGGACCCCAAATCCGGTTGATGTTACTCTATACTGCTATATGTGAT GACCACATGCTGCCATCCGTCATCTGTCCACCTTTATGTAACGTTCGTCG TGCGAATTGACGAATGACGCCAGGGAAAAGGCTCATCCGGACGTTTTTAA TATAATGTTACAGCTTCTCGACGATGGACGTGTTACTGATAGCAAGGGGA ACGTTGTCAACTTCTGCAATTCTATTGTTATCTTCACTTCTAACGTCGGA GGCCAAACCATCTTGGACGTTTCTTCAAACCAAGATTCAGGGGCGCGTGA GGTACACTGCAAGTTATACATTCGTGTTATAAGCATACGAAGTATAACCT ATTCGATTGCTTCATTTCCACCATCGATATGCTGCTGCTGCCACTGGCCA CACAAGTCGATACCGTACACCTCACTTGTGAAACGTCCTGGAGTCATTCT TTTGCACGCACCCGTGCAGATCCTAGCATACATATCGTACATTTATTGTT GAATGAGTGTGCGCTCTGCCATAAAACAGATGTTTTTCAGCGACTACTAA TGCACCCGCCTCTAGATAATAATTTTTCGAAGTTTGACACTTTCAACCCT AAAATGTACCGCGTATCATTTTTCGCCCACAAACGCAGGAAATGCGCAGC CGTGTCATGGCTGCAATGCGGGATGGATTCCGACCTGAGTTCCTTAACAG AATCGACGAATTCGTCATCTTTGAAAGACTTTCGGTCCTGGACATGCGAA AAATTACCTCTCTCGAGCTGAAGAAAGTCTCTGGTCGTCTAGCGGACAAA GATGTTACTTTGGAGGCAACTGACGCAGCGCTGGATTTCTTAGCCGAAGT TGGGTAAGTTACCGGCAGAATATGGAAAAGTACTGCGTACATGTACGATC CCAAGCAAAATAGAACCGACAGTAGACAGACCGCTGACATATTTGGAATT GCAGACATCTATTCTGAGTCCGAAAAAACTGAGGTCGTTTTTGTTGATAT GCCTCTGTAGCTTGGTAATATTCTGCAAATCAGTTTACTGTATTGCCCTT AATTGTTTTATCTCGATTTATAAATGCTTCGTATCCAAGGTACGACGCTG CCTACGGAGCGCGACCCCTGAAGCGGGCGATTCAGCGGGAGGTTGAGACG GTCTTGGCAAAGCGCATCATATCCGGTGAAATTACACCGGGCGTCCACCT CGTAGCGGACATCATCAACGAACGGCTGGTTATTACCGTACGAAGTATGG CCCCAGAGACATCTCTAGCATGAGACACGAACGTGGCCGCTTAAAACAAC TTCCCCATGTCGTTGGGGGTATTGGGTATTTGGTATTTGACTAATTATGT TACTATTGACGATTCTTCTGGTGATTGATAAGTAGTGGTTACGTAATTAC ATGGGACTTTTTCTGTATATTTCCCCCTTTTAATCGAAGCACTTGAAATG CTTTTATTCCCTGCACCAGGGCCCATGGCCACCCAGTTAACTGATGTCTA AAATAAAAGGGTGCTGATAAAGTCAAGATAAACCTCAGCGTGTGCGAGGA GAAAACCAATATGTGATGTGTGATGCACGAGCAAACGTTAATGTCAAAAA TCGACGAGAAAGCGGGTAAAAGAGACACGCCTCTATTGATTATCTTGGTT ACCAAAGGTACGTTGATGTTGCGTCCGTTGTGTACGGGATGGAAAAACAG ATATTCAGGACATAAGCATGGAAATCCTGTGTAATTTGGAAGGGAGATGA TAACCACGTTGTACCCAAGCCCCATTTAACATCTGGCTCTTGGGAGTTTC CTAGAGAGGCTTCTGTTTCCTTTAATATGTTCGTCACGATCCAAGCCTTC ATATGACGCTGGCATCTTCGGGGTACATATCGAAGGGTACAATGTATCGT TGCCAGATAGGAAGAAGAAAATAATCCCATAGGAGCCTTATACTACCGGC TAATCAGATATCTATTTTGGAACTCGCGAGGCTATTATCGCTGAGTCCAA TATATTGTAGAACGGAAAATTGAAACTAGAAAATTAACGCGACTTCTGCA TTTTTTTATCGTTCATTTTCACTTTTCCGAATGCCTCATTACTTTTAGTG GTTCTTTCTTATACCGAAGATCGTTAAAGACGGCAGTATATGTGCTGAAT TTCAGAGTTGTAGGTACTGTAACATAAAGGAAACGAAAGTACTATGGACT GTCTACAACACGATTCGCGGGCTATTCCTCACCCACGACCAATCTCAACC AAACGCGATGGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig10459:2925..9039-

>mRNA_H-elongata_contig10459.380.1 ID=mRNA_H-elongata_contig10459.380.1|Name=mRNA_H-elongata_contig10459.380.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2736bp|location=Sequence derived from alignment at H-elongata_contig10459:2925..9039- (Himanthalia elongata Himel1 dioecious)
ATGGAGAAGTTGTCACTTCGGAAAGAGATAAGACCCGACGCTCTCAAGCG
TGTCGAGCAGATCGATCATGAGATGGAAGTCCTCAAAGACAAGCAGATGG
AGAAGTTGTCACTTCGGAAAGAGATAAGACCCGACGCTCTCAAGCGTGTC
GAGCAGATCGATCATGAGATGGAAGTCCTCAAAGACAAGCAGGAAAATCT
GATGCGAACATGGAATGAGGAACGAGGTCGCGTAGGCAAAATGCAGGCCC
TGAAAGAGAAGCTCGATGCCCTAAAGGTTGAGATCGAGCACGCTGAGAGA
GGATACGACTTGAACAAGGCAGCTGAGCTCAAGTATGCCGTCATGCCCAA
GCTACAGGAAAATCTGATGCGAACATGGAATGAGGAACGAGGTCGCGTAG
GCAAAATGCAGGCCCTGAAAGAGAAGCTCGATGCCCTAAAGGTTGAGATC
GAGCACGCTGAGAGAGGATACGACTTGAACAAGGCAGCTGAGCTCAAGTA
TGCCGTCATGCCCAAGCTACAGAAAGAACTCGAGGAAGAAGAAGACTCGG
TTGACTTGGATGATGATAACACTTCTTCAAATGGCAACCGTATGTTACGA
GACGAGGTTACTCCCGATGACATCGCTGCGATCGTTGCCTCGTGGACAGA
AAGAACTCGAGGAAGAAGAAGACTCGGTTGACTTGGATGATGATAACACT
TCTTCAAATGGCAACCGTATGTTACGAGACGAGGTTACTCCCGATGACAT
CGCTGCGATCGTTGCCTCGTGGACAGGAATACCACCCGGAAAGCTGATGG
AGAGCGAACGTGAGAAGCTTCTCCATCTGGAGGACGAACTTCACCGACGT
GTGATTGGTCAGGATGAAGCGGTTCGGGTAGTGGCCGAAGCCATTCAGCG
CTCAAGGGCAGGCCTCAATGACCCAAACAAGCCAATTGCAAGCTTAATTT
TCCTTGGTCCAACCGGGAATACCACCCGGAAAGCTGATGGAGAGCGAACG
TGAGAAGCTTCTCCATCTGGAGGACGAACTTCACCGACGTGTGATTGGTC
AGGATGAAGCGGTTCGGGTAGTGGCCGAAGCCATTCAGCGCTCAAGGGCA
GGCCTCAATGACCCAAACAAGCCAATTGCAAGCTTAATTTTCCTTGGTCC
AACCGGGGTGGGCAAGACTGAACTTTGCAAGGCGCTTGCTGCCTACATGT
TCGACACCGAGGAAGCAATGGGTGGGCAAGACTGAACTTTGCAAGGCGCT
TGCTGCCTACATGTTCGACACCGAGGAAGCAATGGTCCGCATTGACATGT
CAGAGTACATGGAGAAATTTTCGGTCTCCCGATTGGTTGGTGCACCGCCG
GGATACGTTGGCTACGAGGAAGGTGGACAGCTTACCGACGCCATCAGACA
GAGGCCTTACTCGGTCGTGCTATTCGATGAAATGTCCGCATTGACATGTC
AGAGTACATGGAGAAATTTTCGGTCTCCCGATTGGTTGGTGCACCGCCGG
GATACGTTGGCTACGAGGAAGGTGGACAGCTTACCGACGCCATCAGACAG
AGGCCTTACTCGGTCGTGCTATTCGATGAAATGGAAAAGGCTCATCCGGA
CGTTTTTAATATAATGTTACAGCTTCTCGACGATGGACGTGTTACTGATA
GCAAGGGGAACGTTGTCAACTTCTGCAATTCTATTGTTATCTTCACTTCT
AACGTCGGAGGCCAAACCATCTTGGACGTTTCTTCAAACCAAGATTCAGG
GGCGCGTGAGGGAAAAGGCTCATCCGGACGTTTTTAATATAATGTTACAG
CTTCTCGACGATGGACGTGTTACTGATAGCAAGGGGAACGTTGTCAACTT
CTGCAATTCTATTGTTATCTTCACTTCTAACGTCGGAGGCCAAACCATCT
TGGACGTTTCTTCAAACCAAGATTCAGGGGCGCGTGAGGAAATGCGCAGC
CGTGTCATGGCTGCAATGCGGGATGGATTCCGACCTGAGTTCCTTAACAG
AATCGACGAATTCGTCATCTTTGAAAGACTTTCGGTCCTGGACATGCGAA
AAATTACCTCTCTCGAGCTGAAGAAAGTCTCTGGTCGTCTAGCGGACAAA
GATGTTACTTTGGAGGCAACTGACGCAGCGCTGGATTTCTTAGCCGAAGT
TGGGAAATGCGCAGCCGTGTCATGGCTGCAATGCGGGATGGATTCCGACC
TGAGTTCCTTAACAGAATCGACGAATTCGTCATCTTTGAAAGACTTTCGG
TCCTGGACATGCGAAAAATTACCTCTCTCGAGCTGAAGAAAGTCTCTGGT
CGTCTAGCGGACAAAGATGTTACTTTGGAGGCAACTGACGCAGCGCTGGA
TTTCTTAGCCGAAGTTGGGTACGACGCTGCCTACGGAGCGCGACCCCTGA
AGCGGGCGATTCAGCGGGAGGTTGAGACGGTCTTGGCAAAGCGCATCATA
TCCGGTGAAATTACACCGGGCGTCCACCTCGTAGCGGACATCATCAACGA
ACGGCTGGTTATTACCGTACGAAGTATGGCCCCAGAGACATCTCTAGCAT
GAGTACGACGCTGCCTACGGAGCGCGACCCCTGAAGCGGGCGATTCAGCG
GGAGGTTGAGACGGTCTTGGCAAAGCGCATCATATCCGGTGAAATTACAC
CGGGCGTCCACCTCGTAGCGGACATCATCAACGAACGGCTGGTTATTACC
GTACGAAGTATGGCCCCAGAGACATCTCTAGCATGA
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