mRNA_H-elongata_contig104541.376.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig104541.376.1
Unique NamemRNA_H-elongata_contig104541.376.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: D8LEJ6_ECTSI (p28, 28 kDa light chain of axonemal inner dynein arms n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ6_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 2.350e-61
Identity = 103/119 (86.55%), Postives = 107/119 (89.92%), Query Frame = 1
Query:    1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLVSNGD 357
            +EQLD KL ERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEE I  L   KK LELHVSELRNKV ++  G+
Sbjct:  117 QEQLDNKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALGEDKKGLELHVSELRNKVEVIEKGE 235          
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A7S2CCB2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CCB2_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.420e-50
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 1
Query:    1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKV 336
            +E LD +L ERQA ETGICPVREDLY+Q FDELIR VTLDGPERGLL LRVRDEI+MTIDAYK LY+SSVTFGV+KQLQAEQGMAE+E  I  LEAAKKELE  V ELRNKV
Sbjct:   84 QEMLDKRLLERQARETGICPVREDLYSQCFDELIRQVTLDGPERGLLTLRVRDEIKMTIDAYKILYESSVTFGVRKQLQAEQGMAELESEIEGLEAAKKELENQVLELRNKV 195          
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A835YSJ6_9STRA (p28 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ6_9STRA)

HSP 1 Score: 164 bits (416), Expect = 9.050e-49
Identity = 86/119 (72.27%), Postives = 98/119 (82.35%), Query Frame = 1
Query:    1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLVSNGD 357
            +E LD KL ERQA +TGICPVR+DLY+QAFDELIR VTLDGPERGLL LRVRDEIRMTIDAY+TLYDSSV FG+KKQLQAEQGM EME  I +LE +K+ LE    ELRN+V L+   +
Sbjct:   83 QECLDKKLGERQARDTGICPVRDDLYSQAFDELIRQVTLDGPERGLLLLRVRDEIRMTIDAYRTLYDSSVVFGIKKQLQAEQGMDEMEAEIAQLEESKQALEYRAQELRNRVELMEKRE 201          
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A7S2UXS2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS2_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.390e-48
Identity = 86/119 (72.27%), Postives = 97/119 (81.51%), Query Frame = 1
Query:    1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLVSNGD 357
            +EQLD +L ERQA ET ICPVREDLY+Q FDELIRHVTLD PERGLL LRVRDEIRMTIDAYKTLYDSSVTFG+KKQLQAE GM++ME+ I  LE  KKE E    ELRNK+ ++   +
Sbjct:   98 QEQLDKRLVERQARETDICPVREDLYSQCFDELIRHVTLDSPERGLLLLRVRDEIRMTIDAYKTLYDSSVTFGIKKQLQAEMGMSDMEKQIAILELTKKERENKTLELRNKLEVIEKRE 216          
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A7S1GAQ8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAQ8_9STRA)

HSP 1 Score: 162 bits (411), Expect = 6.130e-48
Identity = 85/115 (73.91%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLV 345
            +E LD KL ERQA E GICPVREDLY+Q FDELIR VT++ PERGLL LRVRDEIRMTIDAYKTLY+SSVTFGV+KQLQAEQG+AEME  I  L  AKK+L+  V ELRNKV ++
Sbjct:   88 QEALDEKLMERQAREMGICPVREDLYSQCFDELIRQVTINSPERGLLLLRVRDEIRMTIDAYKTLYESSVTFGVRKQLQAEQGLAEMESKIEELSEAKKDLQNQVLELRNKVEVI 202          
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: F0Y5N0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5N0_AURAN)

HSP 1 Score: 159 bits (401), Expect = 4.490e-47
Identity = 81/120 (67.50%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLVSNGDD 360
            +E LD +L +RQA + GICPVREDLY+Q +DELIR +TLDGPERGLL LRVRDEIRMTIDAYK LYDSSVTFG++KQLQAEQGM+E+E  I  LEA  K+LE  V ELRN V ++   ++
Sbjct:   36 QEDLDKRLLDRQARDAGICPVREDLYSQCYDELIRQITLDGPERGLLLLRVRDEIRMTIDAYKVLYDSSVTFGIRKQLQAEQGMSELEGRIAELEAENKDLENQVLELRNGVEVIEKREN 155          
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A8J2S909_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S909_9STRA)

HSP 1 Score: 160 bits (404), Expect = 5.430e-47
Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLV 345
            +E LD KL ERQA + GICPVREDLY Q FDELIR +TLDGPERGLL LRVRDE+RMT+DAYK LYDSSVTFGV+KQLQAEQGMAE++  +  LEA  K+LE  V ELRN V +V
Sbjct:   79 QEALDAKLLERQARDAGICPVREDLYAQCFDELIRQLTLDGPERGLLLLRVRDEVRMTVDAYKVLYDSSVTFGVRKQLQAEQGMAELQGRVAELEAENKDLENRVLELRNGVEVV 193          
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A812WGS2_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WGS2_SYMMI)

HSP 1 Score: 149 bits (377), Expect = 1.850e-43
Identity = 74/119 (62.18%), Postives = 93/119 (78.15%), Query Frame = 1
Query:    1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLVSNGD 357
            +E+LD KL ER+A ETGICPVRE+LY+Q FDELIR V LD PERGLL +R RDE++MTIDAYKTLY SSVTFG+KKQL+AEQG+  +EE    L+    +LEL V ELR+K+ ++   +
Sbjct:   36 QEKLDKKLSERKARETGICPVREELYSQCFDELIRQVALDSPERGLLLMRTRDEVKMTIDAYKTLYSSSVTFGIKKQLRAEQGIPALEEQANELQKTNSQLELEVQELRSKLEIIEKRE 154          
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A0G4FKQ2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FKQ2_9ALVE)

HSP 1 Score: 151 bits (381), Expect = 2.600e-43
Identity = 80/119 (67.23%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLVSNGD 357
            +E LD +L ERQA E GICPVRE+LY+QAFDELIR VT+D PERGLL L+VRDEIRMTI AY+TLY SSVTFG +KQLQAEQG AE E  I  LE  KK+LE  V ELRNK   +   +
Sbjct:   99 QEALDQRLMERQAREAGICPVREELYSQAFDELIRQVTIDCPERGLLLLKVRDEIRMTIGAYQTLYQSSVTFGTRKQLQAEQGKAETEAHIQELETTKKDLEARVVELRNKCEAIERRE 217          
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A6G0XVN6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVN6_9STRA)

HSP 1 Score: 149 bits (377), Expect = 6.530e-43
Identity = 76/115 (66.09%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLV 345
            +EQ+D KL +RQA E+GICPVRED+Y+Q FDELIR VT++ PERGLL LR+RDEIRMT DAYKTLYDSS+TFGV+KQLQAEQGM  +E+ I  L   K+E E  V EL NK+ ++
Sbjct:   79 QEQMDAKLIKRQARESGICPVREDIYSQCFDELIRQVTINSPERGLLLLRIRDEIRMTTDAYKTLYDSSITFGVRKQLQAEQGMGSIEDKILLLTEEKREYENKVLELTNKLEII 193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ6_ECTSI2.350e-6186.55p28, 28 kDa light chain of axonemal inner dynein a... [more]
A0A7S2CCB2_9STRA1.420e-5080.36Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YSJ6_9STRA9.050e-4972.27p28 protein n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S2UXS2_9STRA1.390e-4872.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1GAQ8_9STRA6.130e-4873.91Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
F0Y5N0_AURAN4.490e-4767.50Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2S909_9STRA5.430e-4772.17Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A812WGS2_SYMMI1.850e-4362.18Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A0G4FKQ2_9ALVE2.600e-4367.23Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A6G0XVN6_9STRA6.530e-4366.09Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig104541contigH-elongata_contig104541:835..2199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.3
Seed ortholog evalue5.3e-49
Seed eggNOG ortholog2880.D8LEJ6
KEGG koko:K10410
KEGG Pathwayko05016,map05016
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG4001@1,KOG4001@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAxonemal dynein light chain
Ec32 orthologEc-21_004400.1
Exons3
Model size372
Cds size372
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig104541.376.1prot_H-elongata_contig104541.376.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig104541 835..2199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929578.4364827-CDS-H-elongata_contig104541:834..9251622929578.4364827-CDS-H-elongata_contig104541:834..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104541 835..925 +
1691679077.96529-CDS-H-elongata_contig104541:834..9251691679077.96529-CDS-H-elongata_contig104541:834..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104541 835..925 +
1622929578.4576933-CDS-H-elongata_contig104541:1116..12951622929578.4576933-CDS-H-elongata_contig104541:1116..1295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104541 1117..1295 +
1691679077.9771655-CDS-H-elongata_contig104541:1116..12951691679077.9771655-CDS-H-elongata_contig104541:1116..1295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104541 1117..1295 +
1622929578.482443-CDS-H-elongata_contig104541:2097..21991622929578.482443-CDS-H-elongata_contig104541:2097..2199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104541 2098..2199 +
1691679077.9861135-CDS-H-elongata_contig104541:2097..21991691679077.9861135-CDS-H-elongata_contig104541:2097..2199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104541 2098..2199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig104541.376.1

>prot_H-elongata_contig104541.376.1 ID=prot_H-elongata_contig104541.376.1|Name=mRNA_H-elongata_contig104541.376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLR
VRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKE
LELHVSELRNKVTLVSNGDDSTV*
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mRNA from alignment at H-elongata_contig104541:835..2199+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig104541.376.1 ID=mRNA_H-elongata_contig104541.376.1|Name=mRNA_H-elongata_contig104541.376.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1365bp|location=Sequence derived from alignment at H-elongata_contig104541:835..2199+ (Himanthalia elongata Himel1 dioecious)
AAGGAACAACTTGATACGAAGCTTCAAGAGAGACAGGCGTTGGAAACGGG AATTTGCCCCGTCCGCGAAGATCTCTACACTCAAGCCTTCGGTGAGAGCG CCATTCAGATACAAACAGTCGAATTTAACTGATGATGCTTGCGCGCGACG AATCAAATGATGGGGCCAGCTAGTGGACAAGGGGAAAAGCAAGCGCACGG CTTGAGGCTGAGGTGCGTGCTTGCATGCGACGACCACGCTGCCAGCATCA CAATCACCAGTTTACCTTCCGCGTGATTGCAGACGAACTCATCCGGCATG TGACTCTGGACGGCCCGGAGCGCGGGCTCCTGTGCTTGCGGGTGCGCGAC GAGATCAGGATGACCATTGACGCGTACAAAACTCTGTACGACAGCAGTGT GACCTTTGGTGTCAAGAAGCAGCTGCAGGCGGAACAAGGAATGGCCGAAA TGGAAGAATCGGTGAGCGGGAGGAATTTTTTATTTATTACTCTCTAGCGC TCCTGGAGATCGTTGTTCCGTTATGTACCACAGATTCTGAAGCAGCGCGG AGTAACAAAAAAGAGGCGTCATCCGTTAATTTCTTGACCACAAGCACCGA AGTTTATGTGTATTTTTTGTTTTTGTTTGAAGAGACGAGTAGCCTAAGGG TAACCGCGTAATAAGCCAATAGTAGCGTGGAAGTAACGAGGTTGACTCTC ACCAGTACGATTATTTATTTATTTTAATGGTCATCGTCTAAAGTATGAAA ACGGGAGCAAGCCGAGTGAGTTCAACCATCATTGGTTGACGAAGTATAGA GTAGGAGTGTTTTGGAGTTGCACCGCGATAAACGTCCGTAGGCATGCGTG AACCGGGAAGATATGGGTAGATAGATCCCATGGGACACTAGTTAGGATGA GCAACATCACAGTAGTATAATAGGTAGTATTGGCAACCTATGACGTCATA GGGCCCCATCGGCACCACGTGAAAATACAGAAAATAAGTAGTGTTAGAGC TGGAAGAGCTAATAAATAAAAACAATGACAACGCATCGAAGCGCGTTTGC CTGCCTACTTACTGCCTTTCAGAGTTGTAGCCATATTCTGACGTCGTCGA ATCATGACGCACTACTCATGTGTGTGCGTAGTACATGGTAGCGCAGCAAG GTTGACCGCATGACGTCCAGATCTCCGGTAGTCGTCCGCCAGGAAAGCCC GTTTACCGGCGAGACTTGACGTGCTGCGGAAAAGATACCGGGTGGGTGTA TTTTTGTTTACAGATCCCTCGCCTGGAGGCAGCCAAGAAGGAGCTCGAGC TTCATGTATCGGAGCTTCGGAATAAGGTGACGCTCGTTAGCAACGGTGAC GACAGCACGGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig104541:835..2199+

>mRNA_H-elongata_contig104541.376.1 ID=mRNA_H-elongata_contig104541.376.1|Name=mRNA_H-elongata_contig104541.376.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig104541:835..2199+ (Himanthalia elongata Himel1 dioecious)
AAGGAACAACTTGATACGAAGCTTCAAGAGAGACAGGCGTTGGAAACGGG
AATTTGCCCCGTCCGCGAAGATCTCTACACTCAAGCCTTCGAAGGAACAA
CTTGATACGAAGCTTCAAGAGAGACAGGCGTTGGAAACGGGAATTTGCCC
CGTCCGCGAAGATCTCTACACTCAAGCCTTCGACGAACTCATCCGGCATG
TGACTCTGGACGGCCCGGAGCGCGGGCTCCTGTGCTTGCGGGTGCGCGAC
GAGATCAGGATGACCATTGACGCGTACAAAACTCTGTACGACAGCAGTGT
GACCTTTGGTGTCAAGAAGCAGCTGCAGGCGGAACAAGGAATGGCCGAAA
TGGAAGAATCGACGAACTCATCCGGCATGTGACTCTGGACGGCCCGGAGC
GCGGGCTCCTGTGCTTGCGGGTGCGCGACGAGATCAGGATGACCATTGAC
GCGTACAAAACTCTGTACGACAGCAGTGTGACCTTTGGTGTCAAGAAGCA
GCTGCAGGCGGAACAAGGAATGGCCGAAATGGAAGAATCGATCCCTCGCC
TGGAGGCAGCCAAGAAGGAGCTCGAGCTTCATGTATCGGAGCTTCGGAAT
AAGGTGACGCTCGTTAGCAACGGTGACGACAGCACGGTGTGAATCCCTCG
CCTGGAGGCAGCCAAGAAGGAGCTCGAGCTTCATGTATCGGAGCTTCGGA
ATAAGGTGACGCTCGTTAGCAACGGTGACGACAGCACGGTGTGA
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