mRNA_H-elongata_contig104541.376.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: D8LEJ6_ECTSI (p28, 28 kDa light chain of axonemal inner dynein arms n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ6_ECTSI) HSP 1 Score: 197 bits (502), Expect = 2.350e-61 Identity = 103/119 (86.55%), Postives = 107/119 (89.92%), Query Frame = 1
Query: 1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLVSNGD 357
+EQLD KL ERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEE I L KK LELHVSELRNKV ++ G+
Sbjct: 117 QEQLDNKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALGEDKKGLELHVSELRNKVEVIEKGE 235
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A7S2CCB2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CCB2_9STRA) HSP 1 Score: 169 bits (428), Expect = 1.420e-50 Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 1
Query: 1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKV 336
+E LD +L ERQA ETGICPVREDLY+Q FDELIR VTLDGPERGLL LRVRDEI+MTIDAYK LY+SSVTFGV+KQLQAEQGMAE+E I LEAAKKELE V ELRNKV
Sbjct: 84 QEMLDKRLLERQARETGICPVREDLYSQCFDELIRQVTLDGPERGLLTLRVRDEIKMTIDAYKILYESSVTFGVRKQLQAEQGMAELESEIEGLEAAKKELENQVLELRNKV 195
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A835YSJ6_9STRA (p28 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ6_9STRA) HSP 1 Score: 164 bits (416), Expect = 9.050e-49 Identity = 86/119 (72.27%), Postives = 98/119 (82.35%), Query Frame = 1
Query: 1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLVSNGD 357
+E LD KL ERQA +TGICPVR+DLY+QAFDELIR VTLDGPERGLL LRVRDEIRMTIDAY+TLYDSSV FG+KKQLQAEQGM EME I +LE +K+ LE ELRN+V L+ +
Sbjct: 83 QECLDKKLGERQARDTGICPVRDDLYSQAFDELIRQVTLDGPERGLLLLRVRDEIRMTIDAYRTLYDSSVVFGIKKQLQAEQGMDEMEAEIAQLEESKQALEYRAQELRNRVELMEKRE 201
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A7S2UXS2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS2_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.390e-48 Identity = 86/119 (72.27%), Postives = 97/119 (81.51%), Query Frame = 1
Query: 1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLVSNGD 357
+EQLD +L ERQA ET ICPVREDLY+Q FDELIRHVTLD PERGLL LRVRDEIRMTIDAYKTLYDSSVTFG+KKQLQAE GM++ME+ I LE KKE E ELRNK+ ++ +
Sbjct: 98 QEQLDKRLVERQARETDICPVREDLYSQCFDELIRHVTLDSPERGLLLLRVRDEIRMTIDAYKTLYDSSVTFGIKKQLQAEMGMSDMEKQIAILELTKKERENKTLELRNKLEVIEKRE 216
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A7S1GAQ8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAQ8_9STRA) HSP 1 Score: 162 bits (411), Expect = 6.130e-48 Identity = 85/115 (73.91%), Postives = 96/115 (83.48%), Query Frame = 1
Query: 1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLV 345
+E LD KL ERQA E GICPVREDLY+Q FDELIR VT++ PERGLL LRVRDEIRMTIDAYKTLY+SSVTFGV+KQLQAEQG+AEME I L AKK+L+ V ELRNKV ++
Sbjct: 88 QEALDEKLMERQAREMGICPVREDLYSQCFDELIRQVTINSPERGLLLLRVRDEIRMTIDAYKTLYESSVTFGVRKQLQAEQGLAEMESKIEELSEAKKDLQNQVLELRNKVEVI 202
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: F0Y5N0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5N0_AURAN) HSP 1 Score: 159 bits (401), Expect = 4.490e-47 Identity = 81/120 (67.50%), Postives = 97/120 (80.83%), Query Frame = 1
Query: 1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLVSNGDD 360
+E LD +L +RQA + GICPVREDLY+Q +DELIR +TLDGPERGLL LRVRDEIRMTIDAYK LYDSSVTFG++KQLQAEQGM+E+E I LEA K+LE V ELRN V ++ ++
Sbjct: 36 QEDLDKRLLDRQARDAGICPVREDLYSQCYDELIRQITLDGPERGLLLLRVRDEIRMTIDAYKVLYDSSVTFGIRKQLQAEQGMSELEGRIAELEAENKDLENQVLELRNGVEVIEKREN 155
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A8J2S909_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S909_9STRA) HSP 1 Score: 160 bits (404), Expect = 5.430e-47 Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = 1
Query: 1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLV 345
+E LD KL ERQA + GICPVREDLY Q FDELIR +TLDGPERGLL LRVRDE+RMT+DAYK LYDSSVTFGV+KQLQAEQGMAE++ + LEA K+LE V ELRN V +V
Sbjct: 79 QEALDAKLLERQARDAGICPVREDLYAQCFDELIRQLTLDGPERGLLLLRVRDEVRMTVDAYKVLYDSSVTFGVRKQLQAEQGMAELQGRVAELEAENKDLENRVLELRNGVEVV 193
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A812WGS2_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WGS2_SYMMI) HSP 1 Score: 149 bits (377), Expect = 1.850e-43 Identity = 74/119 (62.18%), Postives = 93/119 (78.15%), Query Frame = 1
Query: 1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLVSNGD 357
+E+LD KL ER+A ETGICPVRE+LY+Q FDELIR V LD PERGLL +R RDE++MTIDAYKTLY SSVTFG+KKQL+AEQG+ +EE L+ +LEL V ELR+K+ ++ +
Sbjct: 36 QEKLDKKLSERKARETGICPVREELYSQCFDELIRQVALDSPERGLLLMRTRDEVKMTIDAYKTLYSSSVTFGIKKQLRAEQGIPALEEQANELQKTNSQLELEVQELRSKLEIIEKRE 154
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A0G4FKQ2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FKQ2_9ALVE) HSP 1 Score: 151 bits (381), Expect = 2.600e-43 Identity = 80/119 (67.23%), Postives = 91/119 (76.47%), Query Frame = 1
Query: 1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLVSNGD 357
+E LD +L ERQA E GICPVRE+LY+QAFDELIR VT+D PERGLL L+VRDEIRMTI AY+TLY SSVTFG +KQLQAEQG AE E I LE KK+LE V ELRNK + +
Sbjct: 99 QEALDQRLMERQAREAGICPVREELYSQAFDELIRQVTIDCPERGLLLLKVRDEIRMTIGAYQTLYQSSVTFGTRKQLQAEQGKAETEAHIQELETTKKDLEARVVELRNKCEAIERRE 217
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Match: A0A6G0XVN6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVN6_9STRA) HSP 1 Score: 149 bits (377), Expect = 6.530e-43 Identity = 76/115 (66.09%), Postives = 93/115 (80.87%), Query Frame = 1
Query: 1 KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEESIPRLEAAKKELELHVSELRNKVTLV 345
+EQ+D KL +RQA E+GICPVRED+Y+Q FDELIR VT++ PERGLL LR+RDEIRMT DAYKTLYDSS+TFGV+KQLQAEQGM +E+ I L K+E E V EL NK+ ++
Sbjct: 79 QEQMDAKLIKRQARESGICPVREDIYSQCFDELIRQVTINSPERGLLLLRIRDEIRMTTDAYKTLYDSSITFGVRKQLQAEQGMGSIEDKILLLTEEKREYENKVLELTNKLEII 193 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig104541.376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig104541.376.1 >prot_H-elongata_contig104541.376.1 ID=prot_H-elongata_contig104541.376.1|Name=mRNA_H-elongata_contig104541.376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp KEQLDTKLQERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRback to top mRNA from alignment at H-elongata_contig104541:835..2199+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig104541.376.1 ID=mRNA_H-elongata_contig104541.376.1|Name=mRNA_H-elongata_contig104541.376.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1365bp|location=Sequence derived from alignment at H-elongata_contig104541:835..2199+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig104541:835..2199+ >mRNA_H-elongata_contig104541.376.1 ID=mRNA_H-elongata_contig104541.376.1|Name=mRNA_H-elongata_contig104541.376.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig104541:835..2199+ (Himanthalia elongata Himel1 dioecious)back to top |