mRNA_H-elongata_contig104493.370.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig104493.370.1
Unique NamemRNA_H-elongata_contig104493.370.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig104493.370.1 vs. uniprot
Match: D7FHY7_ECTSI (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY7_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 6.490e-96
Identity = 138/158 (87.34%), Postives = 149/158 (94.30%), Query Frame = 1 
Query:   10 QLITLRVLLQSADGQEYQLNPPFRENLRRALCSANKAPWQGDVPLTADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMSESGLMKTTKGGGALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKV 483
            +L++LRVLL SA GQEYQLNPPFRENL+RALC+++K PWQGDVPL+ADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRS PPARVVKFM ESGLM+  +G GALRITDKGYEFMLKE HVQAW+VVHALINGYGRTQPGCRDELLAFLFQLSYCKV
Sbjct:  107 KLVSLRVLLPSAGGQEYQLNPPFRENLQRALCASDKTPWQGDVPLSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPVRGRGALRITDKGYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKV 264
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BLAST of mRNA_H-elongata_contig104493.370.1 vs. uniprot
Match: A0A6H5KJZ4_9PHAE (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ4_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 7.710e-91
Identity = 140/206 (67.96%), Postives = 151/206 (73.30%), Query Frame = 1 
Query:   10 QLITLRVLLQSADGQEYQLNPPFRENLRRALCSANKAPWQGDVPLTADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMSESGLMKTTKGGGALRITDKG------------------------------------------------YEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKV 483
            +L++LRVLL SADGQEYQLNPPFRENL+RALC+++K PWQGDVPL+ADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRS PPARVVKFM ESGLM+  +GGGALRITDKG                                                YEFMLKE HVQAW+VVHALINGYGRTQPGCRDELLAFLFQLSYCKV
Sbjct:  107 KLVSLRVLLPSADGQEYQLNPPFRENLQRALCASDKTPWQGDVPLSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPVRGGGALRITDKGQEEAWNCSRGARGGSFLCLRGGVGRGGARVLSTSSMLEGAVYPRRTGLYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKV 312
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BLAST of mRNA_H-elongata_contig104493.370.1 vs. uniprot
Match: A0A836C856_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C856_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.040e-30
Identity = 75/172 (43.60%), Postives = 103/172 (59.88%), Query Frame = 1 
Query:   10 QLITLRVLLQS-------ADGQEYQ-----LNPPFRENLRRALCSANKAPWQGD--VPLTADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMSESGLMKTTKGGGALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKV 483
            QL  LRVL+++       A  Q+ +     LNPPFR+NL +AL + + APW+ D    L  D+  P+ AKIE +M  +W+ VL+FLV SD  G    P+ V  FM ++GLM        L IT++GYEFML++ HVQAW+ V +LI     +    RD+LL+FLF LSYC V
Sbjct:   48 QLSALRVLVRAQELSGAAAAAQQQRRGMIALNPPFRKNLLQALLTPDVAPWKDDPRFALRPDKLTPSRAKIEGEMRRKWEAVLHFLVASDGAGAGPTPS-VRAFMQQAGLMARRGRSEQLVITNRGYEFMLRDIHVQAWMFVLSLIRSKS-SDAQARDDLLSFLFMLSYCTV 217
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BLAST of mRNA_H-elongata_contig104493.370.1 vs. uniprot
Match: A0A7S2V1W8_9STRA (General transcription factor IIH subunit 4 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1W8_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.570e-30
Identity = 64/149 (42.95%), Postives = 85/149 (57.05%), Query Frame = 1 
Query:   64 LNPPFRENLRRALCSANKAPWQGDVP--LTADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMSESGLMKTTKGGGALRITDKGYEFMLKETHVQAWIVVHALIN-------GYGRTQPGCRDELLAFLFQLSYCKV 483
            LNP FR NL+ AL S    PWQ +    L  DR PPT A ++R M S+W  VL+FLVGS       PP  V+ F+  +GLM+  +  G + IT++GYEFMLK+  +Q W+ V   +          GR Q    DELLAFL  LS+C++
Sbjct:   36 LNPAFRANLQMALYSGRATPWQEERQKYLKRDRKPPTPAVLQRHMQSRWDQVLHFLVGST--ALPDPPEEVIGFLVNTGLMQEDRAEGTMNITNRGYEFMLKDMSLQVWMTVQEYLRLCMRSGKQQGREQ---HDELLAFLLLLSFCRL 179
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BLAST of mRNA_H-elongata_contig104493.370.1 vs. uniprot
Match: W4FDT1_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDT1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.570e-27
Identity = 61/155 (39.35%), Postives = 87/155 (56.13%), Query Frame = 1 
Query:   22 LRVLLQSADGQEYQLNPPFRENLRRALCSANKAPWQGDVPLTADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMSESGLMKTTKGGG-ALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKV 483
            LRVL  +    EY LNP F++ L++AL S   +PW+          P   A++E+    +W  VL+F+VGS     +APP  V+  +  +GLM+ +K    AL ITD GYEFMLK+ H Q WI V   +    R      +E+L FLFQ+SYC++
Sbjct:   78 LRVLRMAHGTAEYVLNPVFQDQLKKALSSLGGSPWEAGRHKLPSEKPIAAAELEQYARKRWDAVLHFMVGSTAV--AAPPPTVIGILEHTGLMQPSKTDARALHITDTGYEFMLKDIHAQTWIFVLEYMKDIDRKGILSAEEMLQFLFQMSYCRM 230
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BLAST of mRNA_H-elongata_contig104493.370.1 vs. uniprot
Match: A0A024TCW1_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TCW1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 7.730e-27
Identity = 65/156 (41.67%), Postives = 90/156 (57.69%), Query Frame = 1 
Query:   22 LRVLLQSADGQEYQLNPPFRENLRRALCSANKAPWQ-GDVPLTADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMSESGLMKTTKGGG-ALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKV 483
            LRVL       +Y LNP F+E L++AL S   +PW+ G   L A++  P V ++E     +W  VL+F+VGS     +APPA V+  +  + LM+ +K    AL ITD GYEFMLK+ H Q WI V   +    R      DE+L FLFQ+SYC++
Sbjct:   78 LRVLRVVQGSLDYVLNPVFQEQLKKALSSLGGSPWEAGRSKLPAEKPIPAV-ELELYARKRWDSVLHFMVGSTAV--AAPPATVIGILEHTKLMQPSKSDSRALHITDTGYEFMLKDIHAQTWIFVLEYMKDIDRKGILPADEMLQFLFQMSYCRM 230
[Close]
BLAST of mRNA_H-elongata_contig104493.370.1 vs. uniprot
Match: A0A024TBA0_9STRA (General transcription factor IIH subunit 4 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBA0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.110e-26
Identity = 65/156 (41.67%), Postives = 90/156 (57.69%), Query Frame = 1 
Query:   22 LRVLLQSADGQEYQLNPPFRENLRRALCSANKAPWQ-GDVPLTADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMSESGLMKTTKGGG-ALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKV 483
            LRVL       +Y LNP F+E L++AL S   +PW+ G   L A++  P V ++E     +W  VL+F+VGS     +APPA V+  +  + LM+ +K    AL ITD GYEFMLK+ H Q WI V   +    R      DE+L FLFQ+SYC++
Sbjct:   78 LRVLRVVQGSLDYVLNPVFQEQLKKALSSLGGSPWEAGRSKLPAEKPIPAV-ELELYARKRWDSVLHFMVGSTAV--AAPPATVIGILEHTKLMQPSKSDSRALHITDTGYEFMLKDIHAQTWIFVLEYMKDIDRKGILPADEMLQFLFQMSYCRM 230
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BLAST of mRNA_H-elongata_contig104493.370.1 vs. uniprot
Match: A0A485KU14_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KU14_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.500e-25
Identity = 61/159 (38.36%), Postives = 86/159 (54.09%), Query Frame = 1 
Query:   10 QLITLRVLLQSADGQEYQLNPPFRENLRRALCSANKAPWQGDVPLTADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMSESGLMKTTKGGG-ALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKV 483
            +L  LRVL      +E+ LNP F+E L++AL S   +PW+      A   P +   +E+    +W  VL+F+VGS      APP  V+  +  + LM+ +     AL ITD GYEFMLK+ H Q WI V   I    R      +E+L FLFQ+SYC++
Sbjct:   74 KLSHLRVLRVVKGQREFVLNPVFQEQLKKALSSLGGSPWEAGRQKLAAEPPISALDLEQYARKRWDAVLHFMVGSTAV--PAPPPTVIGILEHTRLMQPSSSDARALHITDTGYEFMLKDVHAQTWIFVLEYIKDIDRRGILSAEEMLQFLFQMSYCRM 230
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BLAST of mRNA_H-elongata_contig104493.370.1 vs. uniprot
Match: F0W5B1_9STRA (General transcription factor IIH subunit 4 n=2 Tax=Albugo TaxID=65356 RepID=F0W5B1_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.770e-24
Identity = 63/160 (39.38%), Postives = 89/160 (55.62%), Query Frame = 1 
Query:   10 QLITLRVLLQSADGQEYQLNPPFRENLRRALCSANKAPWQ-GDVPLTADRSPPTVA-KIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMSESGLMKTTKGGGALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKV 483
            +L  LRV  QS+    YQL+  F++ L+ ALC     PW+ G   L  D      + ++ER   S W  VL+++VGS       PP  VV  +  + LM+ +    AL ITDKGYEFMLK+ H+Q WI +   I    RT    ++++L FLFQ+SYC+V
Sbjct:   89 KLRKLRVFTQSSTDS-YQLHAGFQKQLKYALCHLGGCPWEVGRRKLGKDIEVSFASTELERYARSHWDAVLHYMVGSTSV--PDPPQAVVDILLRTNLMQASVDQRALHITDKGYEFMLKDIHIQMWIFILEYIKTLDRTGALKQEDILRFLFQISYCQV 245
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BLAST of mRNA_H-elongata_contig104493.370.1 vs. uniprot
Match: F0W3J3_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W3J3_9STRA)

HSP 1 Score: 107 bits (266), Expect = 7.360e-24
Identity = 63/160 (39.38%), Postives = 89/160 (55.62%), Query Frame = 1 
Query:   10 QLITLRVLLQSADGQEYQLNPPFRENLRRALCSANKAPWQ-GDVPLTADRSPPTVA-KIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMSESGLMKTTKGGGALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELLAFLFQLSYCKV 483
            +L  LRV  QS+    YQL+  F++ L+ ALC     PW+ G   L  D      + ++ER   S W  VL+++VGS       PP  VV  +  + LM+ +    AL ITDKGYEFMLK+ H+Q WI +   I    RT    ++++L FLFQ+SYC+V
Sbjct:  136 KLRKLRVFTQSSTDS-YQLHAGFQKQLKYALCHLGGCPWEVGRRKLGKDIEVSFASTELERYARSHWDAVLHYMVGSTSV--PDPPQAVVDILLRTNLMQASVDQRALHITDKGYEFMLKDIHIQMWIFILEYIKTLDRTGALKQEDILRFLFQISYCQV 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig104493.370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHY7_ECTSI6.490e-9687.34General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A6H5KJZ4_9PHAE7.710e-9167.96General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A836C856_9STRA1.040e-3043.60General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A7S2V1W8_9STRA5.570e-3042.95General transcription factor IIH subunit 4 (Fragme... [more]
W4FDT1_9STRA1.570e-2739.35General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A024TCW1_9STRA7.730e-2741.67General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A024TBA0_9STRA1.110e-2641.67General transcription factor IIH subunit 4 n=2 Tax... [more]
A0A485KU14_9STRA1.500e-2538.36General transcription factor IIH subunit 4 n=1 Tax... [more]
F0W5B1_9STRA3.770e-2439.38General transcription factor IIH subunit 4 n=2 Tax... [more]
F0W3J3_9STRA7.360e-2439.38General transcription factor IIH subunit 4 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig104493contigH-elongata_contig104493:103..2108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score296.6
Seed ortholog evalue7.1e-78
Seed eggNOG ortholog2880.D7FHY7
Preferred nameGTF2H4
KEGG rclassRC00055,RC00523
KEGG koko:K01873,ko:K03144
KEGG ReactionR03665
KEGG Pathwayko00970,ko03022,ko03420,ko05203,map00970,map03022,map03420,map05203
KEGG ModuleM00290,M00359,M00360
GOsGO:0000109,GO:0000112,GO:0000428,GO:0000438,GO:0000439,GO:0000717,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0001671,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009889,GO:0009987,GO:0010224,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016591,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0030234,GO:0030880,GO:0031323,GO:0031326,GO:0031334,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032774,GO:0032781,GO:0032806,GO:0032991,GO:0033554,GO:0033683,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0036260,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043462,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051252,GO:0051276,GO:0051336,GO:0051345,GO:0051716,GO:0055029,GO:0060255,GO:0060589,GO:0060590,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070816,GO:0070911,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097659,GO:0098772,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990391,GO:2000112,GO:2001141
EggNOG free text desc.Helicase conserved C-terminal domain
EggNOG OGsCOG5144@1,KOG3471@2759
EC6.1.1.9
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03021,ko03400
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionTranscription factor TFIIH subunit p52/Tfb2
Ec32 orthologEc-12_006390.1
Exons4
Model size486
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig104493.370.1prot_H-elongata_contig104493.370.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig104493 103..2108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929578.0617154-CDS-H-elongata_contig104493:102..2441622929578.0617154-CDS-H-elongata_contig104493:102..244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104493 103..244 -
1691679077.7737985-CDS-H-elongata_contig104493:102..2441691679077.7737985-CDS-H-elongata_contig104493:102..244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104493 103..244 -
1622929578.0735471-CDS-H-elongata_contig104493:931..10671622929578.0735471-CDS-H-elongata_contig104493:931..1067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104493 932..1067 -
1691679077.7850237-CDS-H-elongata_contig104493:931..10671691679077.7850237-CDS-H-elongata_contig104493:931..1067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104493 932..1067 -
1622929578.0879216-CDS-H-elongata_contig104493:1505..15841622929578.0879216-CDS-H-elongata_contig104493:1505..1584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104493 1506..1584 -
1691679077.8028812-CDS-H-elongata_contig104493:1505..15841691679077.8028812-CDS-H-elongata_contig104493:1505..1584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104493 1506..1584 -
1622929578.1025155-CDS-H-elongata_contig104493:1979..21081622929578.1025155-CDS-H-elongata_contig104493:1979..2108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104493 1980..2108 -
1691679077.8134978-CDS-H-elongata_contig104493:1979..21081691679077.8134978-CDS-H-elongata_contig104493:1979..2108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104493 1980..2108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig104493.370.1

>prot_H-elongata_contig104493.370.1 ID=prot_H-elongata_contig104493.370.1|Name=mRNA_H-elongata_contig104493.370.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
MFPQLITLRVLLQSADGQEYQLNPPFRENLRRALCSANKAPWQGDVPLTA
DRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSAPPARVVKFMSESGLM
KTTKGGGALRITDKGYEFMLKETHVQAWIVVHALINGYGRTQPGCRDELL
AFLFQLSYCKV*
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mRNA from alignment at H-elongata_contig104493:103..2108-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig104493.370.1 ID=mRNA_H-elongata_contig104493.370.1|Name=mRNA_H-elongata_contig104493.370.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2006bp|location=Sequence derived from alignment at H-elongata_contig104493:103..2108- (Himanthalia elongata Himel1 dioecious)
ATGTTTCCCCAGCTGATCACCCTGCGGGTGCTCCTGCAGAGCGCGGACGG
CCAGGAGTACCAGCTGAACCCGCCCTTTCGGGAAAACCTGCGGCGGGCTC
TCTGCTCGGCGAATAAAGCTCCCTGGCAGGTGGGGCACCCGCTGGTTGTT
GGCGACTTTGCCTCATTTTTACGTGGGTTATCGAGTCTCCAAAACGTAAA
CGCAGCTTCTCGTTTCGCTCCAACTTTCCTCGAGAGAGATAGCGTTTTAT
TGTTGCTAGCGCGTCTTGTGCGGTGTTTCACCGTAACTACTTAGCAATTA
TACGCAGTGGTGAAGAGCGTTCGAAAGCGCCCCAGGGAACGCCCTCGGCG
GGGGCGCGGGATTCGAGCTGGCTTCTTACGAACCTTAAGTGGCATGAGAG
GGGGAGTGCATATCCTAGACAGGTAACATTTCTCCCCGTCTTTATTCTGT
TGCCAATATATGTCTGGTGACTGGTGACTGGTGATTGGTGATGCACTTTG
TTGGGATCGGGTTTGGGATCGAAGGGGGATGTTCCGCTGACGGCAGATAG
AAGCCCTCCAACCGTGGCGAAGATCGAACGACAGATGCACTCGCAGTGGC
AAGGTACGTCGGTATCACAGCAGGACGGGCGAGCAACCGTGCGTGCATGC
GAGGTTTTGCCGTCGGATCTTTTGCCCCTTTGCCAGGCGATTGTTGTTAA
GGCGATTCGATCGTGCGTAGTAGGGGAAGGGGAAGCGGGATTATTTATGT
ATATATTGTCTGGGGCGCAAAGAAGCAATCTTCGCCTCGATGGCGTGATT
CGAAGCTGGCACATTTCGCCCGTGCTGCCGGGAGAGCATCACTGCCAGCC
ACCGAATCTGTTTTGGTTGTGTGTGCCAACATTTTCTCATGACCTCTTTC
GTAATCATTCGCAACAGCTCACGACCGCTTGCTTTCGAAAACTGCGGTTC
GTCCGATCGATTCCCCGCTTGCCCAATCAACAACGCAACCCCTTCCTCTC
TCGCGGGCGGCCGCGCGGCCGGATCCTCCCGTGGCGCGCAGACGTGCTCT
ATTTCTTGGTGGGATCCGACGAGGAGGGGAGGAGCGCGCCGCCGGCCAGG
GTAGTAAAATTCATGTCGGAGAGCGGGTTGATGAAGACCACCAAGGGGGG
AGGTGCTCTCCGCATCACCGACAAAGGGTGACTGGTCAATTCACGGCTGC
CTCGCCCCCGCCCCCCCCTCCCGACGAATGCGAACAGGGTCTGTCTAATA
GTCTTTATGTCTGTTTATTGTCCGTTTGACTCGTGTTGGTGTTAGTAGTG
AGGCATCAGCGACAGTAGTACCTTCGCTAAGGTGGCACCAAGAAAGCTTT
ACATTTTGTTTTAGCTTGGGGCGGTAAATAGATGGCTGTTGTGTGTTTTT
GGTCTGCGTTCGATCCCCCACCCAAGTCCTGCCAAAATAGACTCCCCTCG
CTTCATTTCGCGATCGAGCGATTGAGAGATAATCATGCTAAGTCGTGCCC
GCAAGCGAAGTCGTTTTCCTGGAACTCCTAGGCTCAAATAAAATACTTGA
GCTAAGCGCTTGTCGACAACACGACGACCGATGGGACGAAGCACTACTTG
CTTGGCGAGGAGGAGATGCGCCGACAGTTGATCGTTTCGAGCGCGTTCCA
TAGCGGTACACACAGCGAGCGGAGTCGTCTCAGCCTCTTGCCTTGGCCTT
GTGGAGCATCCGTCTCTCTCGCGCGCTCTAGGAAGTAAATAAGATATATA
GTAAATTAGGTATATATATATATATATATATATACACGTATGTAATACTT
ATCTGGCATATATATACGGTCCTCCACCCTTCCTCCTTTTAAAAAATATA
TTATTTTGGTAAAGGTACGAGTTTATGTTGAAGGAAACCCACGTGCAGGC
GTGGATAGTGGTCCACGCGCTCATCAACGGGTACGGCAGGACGCAGCCTG
GTTGCCGGGACGAGCTACTCGCCTTCCTCTTCCAGCTCAGCTACTGCAAG
GTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig104493:103..2108-

>mRNA_H-elongata_contig104493.370.1 ID=mRNA_H-elongata_contig104493.370.1|Name=mRNA_H-elongata_contig104493.370.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig104493:103..2108- (Himanthalia elongata Himel1 dioecious)
ATGTTTCCCCAGCTGATCACCCTGCGGGTGCTCCTGCAGAGCGCGGACGG
CCAGGAGTACCAGCTGAACCCGCCCTTTCGGGAAAACCTGCGGCGGGCTC
TCTGCTCGGCGAATAAAGCTCCCTGGCAGATGTTTCCCCAGCTGATCACC
CTGCGGGTGCTCCTGCAGAGCGCGGACGGCCAGGAGTACCAGCTGAACCC
GCCCTTTCGGGAAAACCTGCGGCGGGCTCTCTGCTCGGCGAATAAAGCTC
CCTGGCAGGGGGATGTTCCGCTGACGGCAGATAGAAGCCCTCCAACCGTG
GCGAAGATCGAACGACAGATGCACTCGCAGTGGCAAGGGGGATGTTCCGC
TGACGGCAGATAGAAGCCCTCCAACCGTGGCGAAGATCGAACGACAGATG
CACTCGCAGTGGCAAGACGTGCTCTATTTCTTGGTGGGATCCGACGAGGA
GGGGAGGAGCGCGCCGCCGGCCAGGGTAGTAAAATTCATGTCGGAGAGCG
GGTTGATGAAGACCACCAAGGGGGGAGGTGCTCTCCGCATCACCGACAAA
GGACGTGCTCTATTTCTTGGTGGGATCCGACGAGGAGGGGAGGAGCGCGC
CGCCGGCCAGGGTAGTAAAATTCATGTCGGAGAGCGGGTTGATGAAGACC
ACCAAGGGGGGAGGTGCTCTCCGCATCACCGACAAAGGGTACGAGTTTAT
GTTGAAGGAAACCCACGTGCAGGCGTGGATAGTGGTCCACGCGCTCATCA
ACGGGTACGGCAGGACGCAGCCTGGTTGCCGGGACGAGCTACTCGCCTTC
CTCTTCCAGCTCAGCTACTGCAAGGTGTAAGTACGAGTTTATGTTGAAGG
AAACCCACGTGCAGGCGTGGATAGTGGTCCACGCGCTCATCAACGGGTAC
GGCAGGACGCAGCCTGGTTGCCGGGACGAGCTACTCGCCTTCCTCTTCCA
GCTCAGCTACTGCAAGGTGTAA
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