mRNA_H-elongata_contig104432.367.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig104432.367.1
Unique NamemRNA_H-elongata_contig104432.367.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig104432.367.1 vs. uniprot
Match: D7FXM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM6_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.050e-7
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 1 
Query: 1096 FTGERLLATGERVVVPELLLACPLTSDMLRQQRELTRRL 1212
            FTG RLLATGER VVPELL ACPLTSDML QQRE+ RRL
Sbjct: 1073 FTGHRLLATGERAVVPELLPACPLTSDMLEQQREIARRL 1111
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BLAST of mRNA_H-elongata_contig104432.367.1 vs. uniprot
Match: A0A6H5L3A9_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A9_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.150e-7
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 1 
Query: 1096 FTGERLLATGERVVVPELLLACPLTSDMLRQQRELTRRL 1212
            FTG RLLATGER VVPELL ACPLTSDML QQRE+ RRL
Sbjct: 1111 FTGHRLLATGERAVVPELLPACPLTSDMLEQQREIARRL 1149
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig104432.367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXM6_ECTSI1.050e-784.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3A9_9PHAE1.150e-784.62Rab3 GTPase-activating protein catalytic subunit n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig104432contigH-elongata_contig104432:557..2275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionRab3 GTPase-activating protein catalytic subunit
Ec32 orthologEc-28_002310.1
Hectar predicted targeting categoryother localisation
Exons3
Model size1212
Cds size1212
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig104432.367.1prot_H-elongata_contig104432.367.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig104432 557..2275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.7605114-CDS-H-elongata_contig104432:556..6381622929577.7605114-CDS-H-elongata_contig104432:556..638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104432 557..638 -
1691679077.6025202-CDS-H-elongata_contig104432:556..6381691679077.6025202-CDS-H-elongata_contig104432:556..638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104432 557..638 -
1622929577.7751045-CDS-H-elongata_contig104432:1034..12451622929577.7751045-CDS-H-elongata_contig104432:1034..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104432 1035..1245 -
1691679077.61115-CDS-H-elongata_contig104432:1034..12451691679077.61115-CDS-H-elongata_contig104432:1034..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104432 1035..1245 -
1622929577.787786-CDS-H-elongata_contig104432:1356..22751622929577.787786-CDS-H-elongata_contig104432:1356..2275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104432 1357..2275 -
1691679077.6203127-CDS-H-elongata_contig104432:1356..22751691679077.6203127-CDS-H-elongata_contig104432:1356..2275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104432 1357..2275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig104432.367.1

>prot_H-elongata_contig104432.367.1 ID=prot_H-elongata_contig104432.367.1|Name=mRNA_H-elongata_contig104432.367.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=404bp
LSTCLLHQKLQMLNCCVAEQNRSRALASSGEARSVGAPAAAHGGGDRGGK
GTRLDTEGREAWAPLRSSSSSLLEEGTAADDGWRSGSVSGNGKREAIALP
KGEKLIPGGDKGRGSGGGGAGNGEEARGGGFAVVTETPEERSARMKAAFA
AERDAILRRVGVKTDSVANGSGGGASDGRSWGVIGQGRGREEGEGQREDL
VSPTSRPSSPSSPSSFSGEADSSRARVEAELSGIGSHIPGERLEQQHSAN
DSSKVSNQDPIPGTAGRGAVKRVGGAVRKVGKVFRAVGRGVRERSTRAAA
VKKVSSECDEAVGMFSEAGSRAGGKGGLGATDERAEDSNAGDADACAGTG
KSGGNGDDEAAASVLFTGERLLATGERVVVPELLLACPLTSDMLRQQREL
TRRL
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mRNA from alignment at H-elongata_contig104432:557..2275-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig104432.367.1 ID=mRNA_H-elongata_contig104432.367.1|Name=mRNA_H-elongata_contig104432.367.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1719bp|location=Sequence derived from alignment at H-elongata_contig104432:557..2275- (Himanthalia elongata Himel1 dioecious)
CTTAGCACGTGTCTACTCCACCAGAAGCTGCAGATGCTAAATTGCTGTGT
GGCGGAGCAGAACCGCTCGCGAGCCCTCGCTTCCTCGGGGGAAGCGCGCT
CGGTTGGTGCGCCCGCTGCGGCTCACGGCGGCGGCGACAGGGGGGGTAAA
GGTACGAGGCTGGACACCGAGGGTCGGGAGGCATGGGCGCCATTAAGGTC
GTCGTCGTCATCGCTGTTAGAGGAAGGCACTGCAGCGGATGATGGCTGGC
GTTCGGGGAGTGTTTCGGGTAACGGGAAAAGAGAGGCGATAGCGTTGCCA
AAAGGGGAAAAATTGATTCCTGGCGGCGACAAAGGGAGAGGAAGCGGTGG
GGGCGGCGCTGGGAATGGAGAGGAAGCACGGGGAGGAGGATTCGCCGTGG
TCACCGAAACGCCGGAGGAGCGATCTGCCCGGATGAAGGCAGCGTTCGCT
GCGGAGAGGGACGCGATTCTTCGAAGGGTCGGGGTAAAAACGGACAGCGT
TGCGAACGGCAGTGGTGGAGGCGCTAGCGACGGGAGATCGTGGGGGGTGA
TCGGACAGGGTCGAGGTCGCGAGGAGGGCGAAGGACAAAGAGAAGATTTG
GTTTCTCCCACCTCCCGCCCTTCATCTCCTTCATCCCCGTCCTCATTCAG
CGGTGAAGCAGACAGTTCACGAGCGCGCGTCGAGGCCGAACTAAGCGGTA
TCGGCTCCCACATCCCAGGAGAGAGGCTAGAGCAGCAACATTCCGCCAAC
GATTCCAGCAAGGTGTCTAACCAGGACCCTATTCCGGGCACGGCAGGACG
GGGTGCCGTGAAGAGGGTTGGCGGCGCCGTGAGAAAAGTGGGCAAAGTGT
TTCGGGCTGTCGGCAGGGGCGTGCGCGAGCGGTCGACAAGAGCCGCTGCC
GTAAAAAAAGTCAGCAGCGGTAACAGTAACGGTAGAGGTAGCGAAATTGT
TAACCGTGAACGTGACGGCTTGGGTAGCGATTCTGCGCGGGGCGCTGACG
GCAAGGCTGAGACGACGGGAGCAGACGAAGAATGTGATGAGGCCGTCGGC
ATGTTTTCCGAAGCCGGGAGCCGAGCGGGAGGGAAAGGGGGATTGGGAGC
AACCGACGAGCGCGCTGAAGACAGCAATGCGGGTGACGCCGACGCCTGTG
CCGGTACCGGAAAGAGTGGTGGCAACGGCGACGATGAAGCGGCCGCCAGC
GTGTTGTTCACGGGAGAGCGCCTTCTTGCAACGGGAGAGCGGTGCGTGTC
AGTTGTTTTTTTGCTTTTACTGGTACGAGCGTGTCATCCGTGAGACTCAA
TTTTATTTGGGTCTGTGCCAGCCTTCGCACGAACTACATCTCCGGGACAA
TATACTTCGGATGGCCCTAACCGTCACGCTTGCGGGTTGGCAGTGACCTA
GACAACCTCGGGCCGCAAGTGAATTAGCTACTACTATAATGCTACCAACT
GCTACCAACTGCAGCTTTACTTTCGAATCAAGCGGGGCCAACAAGGGTGT
AACCAAAACATCGGATACAAGCCTTTTCCCCCCCGGCCCCCCCCCCCCCC
CCTCTTCACCCAGCCCATCCTTTAGTCCGTGGGTGCTGTTCAACCTGTGC
ACCCACCGCATCCGTATATTCCCCTTTCGTGGGACAGGGTTGTCGTTCCC
GAGCTTCTGCTGGCCTGCCCGCTTACGTCGGATATGCTGCGGCAGCAGAG
GGAGCTTACGCGGCGCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig104432:557..2275-

>mRNA_H-elongata_contig104432.367.1 ID=mRNA_H-elongata_contig104432.367.1|Name=mRNA_H-elongata_contig104432.367.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2424bp|location=Sequence derived from alignment at H-elongata_contig104432:557..2275- (Himanthalia elongata Himel1 dioecious)
CTTAGCACGTGTCTACTCCACCAGAAGCTGCAGATGCTAAATTGCTGTGT
GGCGGAGCAGAACCGCTCGCGAGCCCTCGCTTCCTCGGGGGAAGCGCGCT
CGGTTGGTGCGCCCGCTGCGGCTCACGGCGGCGGCGACAGGGGGGGTAAA
GGTACGAGGCTGGACACCGAGGGTCGGGAGGCATGGGCGCCATTAAGGTC
GTCGTCGTCATCGCTGTTAGAGGAAGGCACTGCAGCGGATGATGGCTGGC
GTTCGGGGAGTGTTTCGGGTAACGGGAAAAGAGAGGCGATAGCGTTGCCA
AAAGGGGAAAAATTGATTCCTGGCGGCGACAAAGGGAGAGGAAGCGGTGG
GGGCGGCGCTGGGAATGGAGAGGAAGCACGGGGAGGAGGATTCGCCGTGG
TCACCGAAACGCCGGAGGAGCGATCTGCCCGGATGAAGGCAGCGTTCGCT
GCGGAGAGGGACGCGATTCTTCGAAGGGTCGGGGTAAAAACGGACAGCGT
TGCGAACGGCAGTGGTGGAGGCGCTAGCGACGGGAGATCGTGGGGGGTGA
TCGGACAGGGTCGAGGTCGCGAGGAGGGCGAAGGACAAAGAGAAGATTTG
GTTTCTCCCACCTCCCGCCCTTCATCTCCTTCATCCCCGTCCTCATTCAG
CGGTGAAGCAGACAGTTCACGAGCGCGCGTCGAGGCCGAACTAAGCGGTA
TCGGCTCCCACATCCCAGGAGAGAGGCTAGAGCAGCAACATTCCGCCAAC
GATTCCAGCAAGGTGTCTAACCAGGACCCTATTCCGGGCACGGCAGGACG
GGGTGCCGTGAAGAGGGTTGGCGGCGCCGTGAGAAAAGTGGGCAAAGTGT
TTCGGGCTGTCGGCAGGGGCGTGCGCGAGCGGTCGACAAGAGCCGCTGCC
GTAAAAAAAGTCAGCAGCGCTTAGCACGTGTCTACTCCACCAGAAGCTGC
AGATGCTAAATTGCTGTGTGGCGGAGCAGAACCGCTCGCGAGCCCTCGCT
TCCTCGGGGGAAGCGCGCTCGGTTGGTGCGCCCGCTGCGGCTCACGGCGG
CGGCGACAGGGGGGGTAAAGGTACGAGGCTGGACACCGAGGGTCGGGAGG
CATGGGCGCCATTAAGGTCGTCGTCGTCATCGCTGTTAGAGGAAGGCACT
GCAGCGGATGATGGCTGGCGTTCGGGGAGTGTTTCGGGTAACGGGAAAAG
AGAGGCGATAGCGTTGCCAAAAGGGGAAAAATTGATTCCTGGCGGCGACA
AAGGGAGAGGAAGCGGTGGGGGCGGCGCTGGGAATGGAGAGGAAGCACGG
GGAGGAGGATTCGCCGTGGTCACCGAAACGCCGGAGGAGCGATCTGCCCG
GATGAAGGCAGCGTTCGCTGCGGAGAGGGACGCGATTCTTCGAAGGGTCG
GGGTAAAAACGGACAGCGTTGCGAACGGCAGTGGTGGAGGCGCTAGCGAC
GGGAGATCGTGGGGGGTGATCGGACAGGGTCGAGGTCGCGAGGAGGGCGA
AGGACAAAGAGAAGATTTGGTTTCTCCCACCTCCCGCCCTTCATCTCCTT
CATCCCCGTCCTCATTCAGCGGTGAAGCAGACAGTTCACGAGCGCGCGTC
GAGGCCGAACTAAGCGGTATCGGCTCCCACATCCCAGGAGAGAGGCTAGA
GCAGCAACATTCCGCCAACGATTCCAGCAAGGTGTCTAACCAGGACCCTA
TTCCGGGCACGGCAGGACGGGGTGCCGTGAAGAGGGTTGGCGGCGCCGTG
AGAAAAGTGGGCAAAGTGTTTCGGGCTGTCGGCAGGGGCGTGCGCGAGCG
GTCGACAAGAGCCGCTGCCGTAAAAAAAGTCAGCAGCGAATGTGATGAGG
CCGTCGGCATGTTTTCCGAAGCCGGGAGCCGAGCGGGAGGGAAAGGGGGA
TTGGGAGCAACCGACGAGCGCGCTGAAGACAGCAATGCGGGTGACGCCGA
CGCCTGTGCCGGTACCGGAAAGAGTGGTGGCAACGGCGACGATGAAGCGG
CCGCCAGCGTGTTGTTCACGGGAGAGCGCCTTCTTGCAACGGGAGAGCGA
ATGTGATGAGGCCGTCGGCATGTTTTCCGAAGCCGGGAGCCGAGCGGGAG
GGAAAGGGGGATTGGGAGCAACCGACGAGCGCGCTGAAGACAGCAATGCG
GGTGACGCCGACGCCTGTGCCGGTACCGGAAAGAGTGGTGGCAACGGCGA
CGATGAAGCGGCCGCCAGCGTGTTGTTCACGGGAGAGCGCCTTCTTGCAA
CGGGAGAGCGGGTTGTCGTTCCCGAGCTTCTGCTGGCCTGCCCGCTTACG
TCGGATATGCTGCGGCAGCAGAGGGAGCTTACGCGGCGCCTCGGTTGTCG
TTCCCGAGCTTCTGCTGGCCTGCCCGCTTACGTCGGATATGCTGCGGCAG
CAGAGGGAGCTTACGCGGCGCCTC
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