mRNA_H-elongata_contig104430.366.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig104430.366.1
Unique NamemRNA_H-elongata_contig104430.366.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig104430.366.1 vs. uniprot
Match: A0A6H5LCN5_9PHAE (Utp12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCN5_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 6.190e-48
Identity = 90/116 (77.59%), Postives = 104/116 (89.66%), Query Frame = 1
Query:   13 FQISHNRSLEGVLDELHSKRLTEAGSLDVLEA-SDSDGDRDSFQGAKL--PGVARGDDGS-RKTREEARSSCVRFSPTGREWAACTTDGLLLYSLDESTTFDPSELDESITPEAIQ 348
            FQISHNRSL+GVLDELH+KRLTEAGSLD+LEA SDSDG+ + ++GA L  PG  RG DGS R+TREEARS+CVRFSPTGREWAACTTDGLLLYSLDE+  FDPS+LDE++TPEA+Q
Sbjct:  662 FQISHNRSLDGVLDELHNKRLTEAGSLDMLEAGSDSDGEGERYRGANLALPGAERGADGSSRRTREEARSTCVRFSPTGREWAACTTDGLLLYSLDEAAVFDPSDLDETVTPEAVQ 777          
BLAST of mRNA_H-elongata_contig104430.366.1 vs. uniprot
Match: A0A2R5GPN5_9STRA (Guanine nucleotide-binding protein subunit beta-1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GPN5_9STRA)

HSP 1 Score: 125 bits (314), Expect = 4.950e-31
Identity = 61/119 (51.26%), Postives = 90/119 (75.63%), Query Frame = 1
Query:    1 LLFFFQISHNRSLEGVLDELHSKRLTEAGS---LDVLEASDSDGDRDSFQGAKLPGVARGDDGSRKTREEARSSCVRFSPTGREWAACTTDGLLLYSLDESTTFDPSELDESITPEAIQ 348
            LL  +Q+SHNRSL+G+LD+L S++LTEAG+   LD+ +ASDS+G+  + +   LPG +RGD G R T+ E R  CV+FSP G+EWAA TT+GL++Y+LD +  FDP +L+E +TP+ ++
Sbjct:  634 LLKKYQLSHNRSLDGILDKLDSRKLTEAGNSDTLDLSDASDSEGEDMAARAKALPGASRGDLGKRITKPEIRCKCVQFSPNGQEWAAATTEGLMIYALDNAMLFDPFQLEEDVTPDRVR 752          
BLAST of mRNA_H-elongata_contig104430.366.1 vs. uniprot
Match: A0A836CGV6_9STRA (Periodic tryptophan protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGV6_9STRA)

HSP 1 Score: 124 bits (312), Expect = 9.250e-31
Identity = 68/132 (51.52%), Postives = 86/132 (65.15%), Query Frame = 1
Query:   13 FQISHNRSLEGVLDELHSKRLTEAGSLDVLEASDSDGDRDSFQGAKLPGVARGDDGSRK----------------------TREEARSSCVRFSPTGREWAACTTDGLLLYSLDESTTFDPSELDESITPEA 342
            FQ+SHNRSLEG+LDELHS RLTE GSLD+L ASDS+G+     G  LPG  RG++G R+                      T+E  R++CVRFSPTG+EWAA T  G+LL++LD+ T F P++LDE  TP A
Sbjct:  616 FQVSHNRSLEGILDELHSGRLTEGGSLDLLPASDSEGEGRG-SGGGLPGAKRGNEGKRQPAHILTACLNARPRCCFRCRAQTKEAVRTTCVRFSPTGQEWAAATPHGVLLFALDDVTAFTPTDLDEDATPAA 746          
BLAST of mRNA_H-elongata_contig104430.366.1 vs. uniprot
Match: A0A7S4N7D1_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N7D1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.030e-29
Identity = 65/116 (56.03%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 LLFFFQISHNRSLEGVLDELHSKRLTEAGSLDVLEASDSDGDRDSFQGAKLPGVARGDDGSRKTREEARSSCVRFSPTGREWAACTTDGLLLYSLDESTTFDPSELDESITPEAIQ 348
            LL  FQIS NRSL+GVLDEL+SK L E G LD  + SD + D   F   +LPG  RGDDGSR TR E  ++ V FSPTGREW+A + +GL +YSLD+   FDP  L E++TP A+Q
Sbjct:  464 LLKKFQISFNRSLDGVLDELNSKNLGEGGPLDDRDGSDDEAD---FSSGRLPGAKRGDDGSRSTRVEVLTTSVAFSPTGREWSAVSGEGLHVYSLDDDMIFDPIALTEAVTPSAVQ 576          
BLAST of mRNA_H-elongata_contig104430.366.1 vs. uniprot
Match: A0A2D0XKL4_9BASI (Utp12 domain-containing protein n=1 Tax=Bartheletia paradoxa TaxID=669517 RepID=A0A2D0XKL4_9BASI)

HSP 1 Score: 120 bits (301), Expect = 2.800e-29
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = 1
Query:   13 FQISHNRSLEGVLDELHSKRLTEAGSLDVLEASDSDGDRDSFQGAKLPGVARGDDGSRKTREEARSSCVRFSPTGREWAACTTDGLLLYSLDESTTFDPSELDESITPEAIQVT 354
            FQISHN SL+G  + L S+ +TEAG L +++ +  + D +      LPGV RGD   R+TR+EAR+  VRFSPTGR WAA +T+GLL+YSLDES  FDP +LD  ITP++I  T
Sbjct:  626 FQISHNLSLDGTQEFLDSRNMTEAGPLSLVDTAGDESDLEDRIDRTLPGVGRGDLSKRRTRQEARTKAVRFSPTGRSWAAASTEGLLVYSLDESLVFDPFDLDMDITPQSIVAT 739          
BLAST of mRNA_H-elongata_contig104430.366.1 vs. uniprot
Match: A0A0G4J7J5_PLABS (Utp12 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J7J5_PLABS)

HSP 1 Score: 119 bits (298), Expect = 7.070e-29
Identity = 62/116 (53.45%), Postives = 85/116 (73.28%), Query Frame = 1
Query:   13 FQISHNRSLEGVLDELHSKRLTEAGSLDVLEASDSDGD----RDSFQGAKLPGVARGDDGSRK-TREEARSSCVRFSPTGREWAACTTDGLLLYSLDESTTFDPSELDESITPEAI 345
            FQIS NR+L+G++D L+S ++T+AG +D ++ SDSD D    R + + A LPGVA+GD   R+ TR    + CVRFSPTGR WAA +T+GLL+YSLD+  TFDP ++DE +TPE I
Sbjct:  596 FQISSNRALDGIVDMLNSGKMTDAGPVDEIDDSDSDEDTAGARAARRDANLPGVAKGDLSKRRATRPAVATKCVRFSPTGRSWAAASTEGLLVYSLDQDMTFDPVDIDEDVTPERI 711          
BLAST of mRNA_H-elongata_contig104430.366.1 vs. uniprot
Match: A0A1Y1WFS9_9FUNG (WD40 repeat-like protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WFS9_9FUNG)

HSP 1 Score: 119 bits (298), Expect = 7.100e-29
Identity = 60/116 (51.72%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 LLFFFQISHNRSLEGVLDELHSKRLTEAGSLDVLEASDSDGDRDSFQGAKLPGVARGDDGSRKTREEARSSCVRFSPTGREWAACTTDGLLLYSLDESTTFDPSELDESITPEAIQ 348
            LL  FQ+S N SL+GV ++L+SK +TEAG  D++++   D D +      LPGV  GD  +R  R E R+  VRFSPTGR+WAA +T+GL++YSLDE+  FDP ELDE +TPE I+
Sbjct:  592 LLRKFQVSKNLSLDGVQEKLNSKNMTEAGPADLIDSDGIDSDTEKAADNSLPGVRSGDKSNRVLRPEVRTRDVRFSPTGRQWAAASTEGLMIYSLDETLVFDPYELDEDVTPETIR 707          
BLAST of mRNA_H-elongata_contig104430.366.1 vs. uniprot
Match: A0A165ITB7_9BASI (WD40 repeat-like protein n=2 Tax=Calocera TaxID=29888 RepID=A0A165ITB7_9BASI)

HSP 1 Score: 119 bits (298), Expect = 7.100e-29
Identity = 56/111 (50.45%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   13 FQISHNRSLEGVLDELHSKRLTEAGSLDVLEASDSDGDRDSFQGAKLPGVARGDDGSRKTREEARSSCVRFSPTGREWAACTTDGLLLYSLDESTTFDPSELDESITPEAI 345
            +QIS N SLEG  + L S+++TEAG++D+++      D D  Q  +LPG  RGD G R+ R+EAR+ C+RFSPTGR WAA +T+GLL+YS D+  TFDP +LD  +TP+++
Sbjct:  618 YQISQNLSLEGTEEFLDSRKITEAGNVDLIDRQGDASDLDDRQDPRLPGAQRGDLGKRRYRQEARTKCIRFSPTGRSWAAASTEGLLIYSTDDGITFDPFDLDIELTPQSL 728          
BLAST of mRNA_H-elongata_contig104430.366.1 vs. uniprot
Match: A0A060S832_PYCCI (Utp12 domain-containing protein n=4 Tax=Trametes TaxID=5324 RepID=A0A060S832_PYCCI)

HSP 1 Score: 119 bits (297), Expect = 9.690e-29
Identity = 57/111 (51.35%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   13 FQISHNRSLEGVLDELHSKRLTEAGSLDVLEASDSDGDRDSFQGAKLPGVARGDDGSRKTREEARSSCVRFSPTGREWAACTTDGLLLYSLDESTTFDPSELDESITPEAI 345
            FQIS N SL+G  + L S+++TEAG++D+++    + D +      LPG  RGD   R+ R+EAR+ CVRF+PTGR WAA +T+GLL+YS+DESTTFDP +LD  +TP+A+
Sbjct:  621 FQISQNLSLDGTEEFLDSRKVTEAGNIDLIDDRGDESDLEDRLDTALPGAQRGDMSKRRYRQEARTKCVRFAPTGRAWAAASTEGLLIYSVDESTTFDPFDLDIELTPQAL 731          
BLAST of mRNA_H-elongata_contig104430.366.1 vs. uniprot
Match: A0A1Y2HWL2_9FUNG (Putative WD repeat protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HWL2_9FUNG)

HSP 1 Score: 118 bits (296), Expect = 1.320e-28
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = 1
Query:   13 FQISHNRSLEGVLDELHSKRLTEAGSLDVLEASDSD------GDRDSFQGAKLPGVARGDDGSRKTREEARSSCVRFSPTGREWAACTTDGLLLYSLDESTTFDPSELDESITPEAI 345
            FQ+SHN +L+G+ D+L+S+R+TEAGS+D+LE    D      G R + Q  KLPG  +GD   R T  E R+SCVRF+PTGR WAA TT+GL++YSLD+   FDP +LD  ITP  I
Sbjct:  596 FQLSHNLTLDGIKDQLNSRRMTEAGSMDLLEREMDDEESEKLGHRKTKQ-LKLPGATKGDLSERTTHPEVRTSCVRFAPTGRAWAAATTEGLMVYSLDDKILFDPFDLDVDITPTTI 711          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig104430.366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LCN5_9PHAE6.190e-4877.59Utp12 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A2R5GPN5_9STRA4.950e-3151.26Guanine nucleotide-binding protein subunit beta-1 ... [more]
A0A836CGV6_9STRA9.250e-3151.52Periodic tryptophan protein 2 n=1 Tax=Tribonema mi... [more]
A0A7S4N7D1_9STRA1.030e-2956.03Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A2D0XKL4_9BASI2.800e-2953.51Utp12 domain-containing protein n=1 Tax=Bartheleti... [more]
A0A0G4J7J5_PLABS7.070e-2953.45Utp12 domain-containing protein n=1 Tax=Plasmodiop... [more]
A0A1Y1WFS9_9FUNG7.100e-2951.72WD40 repeat-like protein n=1 Tax=Linderina pennisp... [more]
A0A165ITB7_9BASI7.100e-2950.45WD40 repeat-like protein n=2 Tax=Calocera TaxID=29... [more]
A0A060S832_PYCCI9.690e-2951.35Utp12 domain-containing protein n=4 Tax=Trametes T... [more]
A0A1Y2HWL2_9FUNG1.320e-2852.99Putative WD repeat protein n=1 Tax=Catenaria angui... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig104430contigH-elongata_contig104430:7..1051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig104430.366.1prot_H-elongata_contig104430.366.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig104430 9..957 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.2190087-UTR-H-elongata_contig104430:6..81622929577.2190087-UTR-H-elongata_contig104430:6..8Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104430 7..8 -
1691679077.5447567-UTR-H-elongata_contig104430:6..81691679077.5447567-UTR-H-elongata_contig104430:6..8Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104430 7..8 -
1622929577.2574332-UTR-H-elongata_contig104430:957..10511622929577.2574332-UTR-H-elongata_contig104430:957..1051Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104430 958..1051 -
1691679077.5910025-UTR-H-elongata_contig104430:957..10511691679077.5910025-UTR-H-elongata_contig104430:957..1051Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104430 958..1051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.2324216-CDS-H-elongata_contig104430:8..2031622929577.2324216-CDS-H-elongata_contig104430:8..203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104430 9..203 -
1691679077.55644-CDS-H-elongata_contig104430:8..2031691679077.55644-CDS-H-elongata_contig104430:8..203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104430 9..203 -
1622929577.2449346-CDS-H-elongata_contig104430:894..9571622929577.2449346-CDS-H-elongata_contig104430:894..957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104430 895..957 -
1691679077.5798287-CDS-H-elongata_contig104430:894..9571691679077.5798287-CDS-H-elongata_contig104430:894..957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104430 895..957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig104430.366.1

>prot_H-elongata_contig104430.366.1 ID=prot_H-elongata_contig104430.366.1|Name=mRNA_H-elongata_contig104430.366.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MCWRLLTATGTGTASKGPNCQAWRAGMMVRERRERRRGRAALDLAPRGES
GRHARQMGCCCTPWTSPRPLTPRSSTRASRPKLYR*
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mRNA from alignment at H-elongata_contig104430:7..1051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig104430.366.1 ID=mRNA_H-elongata_contig104430.366.1|Name=mRNA_H-elongata_contig104430.366.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1045bp|location=Sequence derived from alignment at H-elongata_contig104430:7..1051- (Himanthalia elongata Himel1 dioecious)
TTGCTTTTTTTTTTTCAGATATCACACAACCGCTCCTTAGAAGGCGTCCT GGATGAGCTCCATAGTAAGCGACTAACGGAGGCCGGGTCTCTAGATGTGT TGGAGGCTTCTGACAGCGACGGGGACAGGGACAGCTTCCAAGGGGCCAAA TTGCCAGGTATAGCTCACGCTTGTATATTTACTATATTTACTGAATGTAC TGTGTATGTGTGTATCATTTATTAAATTGCACATAACCGCGCAATCTGGC CCTACCATCCTAGTAATTCTATGCGATTGTGTGTGTGTGTGTGTGTGTGT GTTTGTATATGTTTTTATTAAAAAAAATGAACTCATCCCAACCCTCCGAA TATCCACGCCTTCTTAGCACGATGAGAGGTGCAGTCCACGGGACCAACTA TCGTGAGGTTCGAATGTGTACATATTAAATTGCACATAGCCGCTAAGGCA ATCCGCCCCTATACTGTCATAGTCCCTCTTATGCTTGTCATTCTAGGCTA CCCTTGCATTGATTGGTGATTGGCCCTCTCAATTGGGGATCGGGGTGTAT TCCGAGTGCCGCACAGCTAGTACATGAAACGCCCTCACGGGGGGTGGGGT GGGGAGGGGCATTAAATCTTCCCGCTCTTCCCGCTCCGGGCACACATATC ATCCCATCCCATCGCCCATCTCATCGCTCATCCCACTCCATTCCACCCTA TGCGATGCCATTTCATACCACTCAGTTCTATCCGGGTCAATGAGAACGCG TCCGCGGATTTTTGCTTGAAAGTTGAGCTCATTTACCCTCCGCACTACAA CGCCCCCCAACCCCACGCGAATAATGCCTCCATATACACATACTAAAGGC GTGGCGCGCGGGGATGATGGTTCGAGAAAGACGAGAGAGGAGGCGAGGTC GAGCTGCGTTAGATTTAGCCCCACGGGGAGAGAGTGGGCGGCATGCACGA CAGATGGGCTGCTGCTGTACTCCTTGGACGAGTCCACGACCTTTGACCCC TCGGAGCTCGACGAGAGCATCACGCCCGAAGCTATACAGGTGACG
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Coding sequence (CDS) from alignment at H-elongata_contig104430:7..1051-

>mRNA_H-elongata_contig104430.366.1 ID=mRNA_H-elongata_contig104430.366.1|Name=mRNA_H-elongata_contig104430.366.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig104430:7..1051- (Himanthalia elongata Himel1 dioecious)
ATGTGTTGGAGGCTTCTGACAGCGACGGGGACAGGGACAGCTTCCAAGGG
GCCAAATTGCCAGATGTGTTGGAGGCTTCTGACAGCGACGGGGACAGGGA
CAGCTTCCAAGGGGCCAAATTGCCAGGCGTGGCGCGCGGGGATGATGGTT
CGAGAAAGACGAGAGAGGAGGCGAGGTCGAGCTGCGTTAGATTTAGCCCC
ACGGGGAGAGAGTGGGCGGCATGCACGACAGATGGGCTGCTGCTGTACTC
CTTGGACGAGTCCACGACCTTTGACCCCTCGGAGCTCGACGAGAGCATCA
CGCCCGAAGCTATACAGGTGAGCGTGGCGCGCGGGGATGATGGTTCGAGA
AAGACGAGAGAGGAGGCGAGGTCGAGCTGCGTTAGATTTAGCCCCACGGG
GAGAGAGTGGGCGGCATGCACGACAGATGGGCTGCTGCTGTACTCCTTGG
ACGAGTCCACGACCTTTGACCCCTCGGAGCTCGACGAGAGCATCACGCCC
GAAGCTATACAGGTGA
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