mRNA_H-elongata_contig104421.365.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig104421.365.1
Unique NamemRNA_H-elongata_contig104421.365.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig104421.365.1 vs. uniprot
Match: D7FVF0_ECTSI (Dnm1, dynamin-related GTPase involved in mitochondrial division n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVF0_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 6.430e-29
Identity = 61/75 (81.33%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 QDLVPKAIMHFLVNDVVNMLQNELVSTLYKEDLTGELMRETDDVAERRRISRDMLVLLEKASGIVNEVRDFNPFL 225
            QDLVPK IMHFLVNDV        VS LYKEDLTGELMRETDDVAERRRISRDML LL+KA GIV+EVRDFNPFL
Sbjct:  772 QDLVPKTIMHFLVNDVXXXXXXXXVSKLYKEDLTGELMRETDDVAERRRISRDMLSLLKKAVGIVSEVRDFNPFL 846
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BLAST of mRNA_H-elongata_contig104421.365.1 vs. uniprot
Match: A0A836CKP3_9STRA (Dynamin central region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKP3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.230e-25
Identity = 50/72 (69.44%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 QDLVPKAIMHFLVNDVVNMLQNELVSTLYKEDLTGELMRETDDVAERRRISRDMLVLLEKASGIVNEVRDFN 216
            QD+VPKAIMHFLVN+V+  +QN+LVS+LY+E+L  ELMRET+DVAERRRI+R+M  LL +A  I+NEVRDFN
Sbjct:  677 QDMVPKAIMHFLVNEVIQSMQNQLVSSLYREELIAELMRETEDVAERRRIAREMFELLHRAMAILNEVRDFN 748
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BLAST of mRNA_H-elongata_contig104421.365.1 vs. uniprot
Match: W7TS70_9STRA (Dynamin switch motor protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS70_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.150e-22
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    4 DLVPKAIMHFLVNDVVNMLQNELVSTLYKEDLTGELMRETDDVAERRRISRDMLVLLEKASGIVNEVRDFNPF 222
            D+VPK IM+FLVN   + LQNELVS LY++DL GE MRET DVA RR+ +++M +LL+KA  IVNEVRDFN F
Sbjct:   35 DMVPKTIMYFLVNHAKDNLQNELVSNLYRDDLIGESMRETADVAMRRKNAQEMKLLLQKALEIVNEVRDFNTF 107
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BLAST of mRNA_H-elongata_contig104421.365.1 vs. uniprot
Match: K0RKT6_THAOC (GED domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RKT6_THAOC)

HSP 1 Score: 88.6 bits (218), Expect = 3.490e-20
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    4 DLVPKAIMHFLVNDVVNMLQNELVSTLYKEDLTGELMRETDDVAERRRISRDMLVLLEKASGIVNEVRDFNPF 222
            D VPK IM+FLVN V + LQNELVS LY+E   G LMRE DD+A+RRR   +M  LLEKA  IVNEVRD+N F
Sbjct:  124 DSVPKTIMYFLVNHVKDELQNELVSELYREAEIGNLMREADDIAQRRRTCVEMKELLEKALEIVNEVRDYNSF 196
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BLAST of mRNA_H-elongata_contig104421.365.1 vs. uniprot
Match: A0A2D4BI22_PYTIN (Dynamin-2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BI22_PYTIN)

HSP 1 Score: 89.4 bits (220), Expect = 4.700e-19
Identity = 46/73 (63.01%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    4 DLVPKAIMHFLVNDVVNMLQNELVSTLYKEDLTGELMRETDDVAERRRISRDMLVLLEKASGIVNEVRDFNPF 222
            DLVPKAIM+F+VN     +QNELVS LY+ED  GEL+RET DVA RR    +M +LL++A  IVNEVRDFN F
Sbjct:  654 DLVPKAIMNFMVNHAKENVQNELVSALYREDKLGELLRETGDVAARRSNCHEMRMLLQRALEIVNEVRDFNTF 726
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BLAST of mRNA_H-elongata_contig104421.365.1 vs. uniprot
Match: A0A7S0KCE8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KCE8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.580e-18
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:    4 DLVPKAIMHFLVNDVVNMLQNELVSTLYKEDLTGELMRETDDVAERRRISRDMLVLLEKASGIVNEVRDFNPF 222
            D+VPK IM+FLVN   + +QNELVS LY+E    +LMRE +D+A+RR+   +M  LL KA  IVNEVRDFN F
Sbjct:   95 DMVPKTIMYFLVNHSRDSMQNELVSELYREANIADLMREAEDIAQRRKTCHEMRELLRKALDIVNEVRDFNTF 167
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BLAST of mRNA_H-elongata_contig104421.365.1 vs. uniprot
Match: A0A7S2V112_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V112_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.640e-18
Identity = 46/71 (64.79%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    4 DLVPKAIMHFLVNDVVNMLQNELVSTLYKEDLTGELMRETDDVAERRRISRDMLVLLEKASGIVNEVRDFN 216
            DLVPK IMHFLVNDV + LQNELVS LYKEDL  EL+RETDDVA +R   ++   LL  A  I+NEVRD +
Sbjct:  681 DLVPKTIMHFLVNDVKDSLQNELVSHLYKEDLISELLRETDDVAAKRIRCKETHTLLNMAMEIINEVRDID 751
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BLAST of mRNA_H-elongata_contig104421.365.1 vs. uniprot
Match: A0A024TUW8_9STRA (Uncharacterized protein n=14 Tax=Aphanomyces TaxID=100860 RepID=A0A024TUW8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.150e-18
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    4 DLVPKAIMHFLVNDVVNMLQNELVSTLYKEDLTGELMRETDDVAERRRISRDMLVLLEKASGIVNEVRDFNPF 222
            DLVPKAIM F+VN   + +QN+LVS+LYKED  G+L+RE+ D+A RR    +M  LL KA  IVNEVRDFN F
Sbjct:  617 DLVPKAIMCFMVNHAKDQVQNQLVSSLYKEDKLGDLLRESGDIASRRANCSEMRTLLSKALDIVNEVRDFNTF 689
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BLAST of mRNA_H-elongata_contig104421.365.1 vs. uniprot
Match: A0A7S0XCP8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XCP8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.060e-17
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    4 DLVPKAIMHFLVNDVVNMLQNELVSTLYKEDLTGELMRETDDVAERRRISRDMLVLLEKASGIVNEVRDFN 216
            D+VPKAIMHFLVN     L +ELV+ LYK++L  ELM+ETDDVA +R+  R+M  LL+KA  IVNEVR++N
Sbjct:  704 DMVPKAIMHFLVNAFKESLPHELVAELYKDNLISELMKETDDVANKRKACREMKDLLQKALEIVNEVREYN 774
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BLAST of mRNA_H-elongata_contig104421.365.1 vs. uniprot
Match: A0A485KTM0_9STRA (Aste57867_11655 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTM0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.680e-17
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    4 DLVPKAIMHFLVNDVVNMLQNELVSTLYKEDLTGELMRETDDVAERRRISRDMLVLLEKASGIVNEVRDFN 216
            DLVPK IM F+VN   + +QN+LVSTLYKE+  GEL+RE+ D+A RR    +M  LL KA  IVNEVRDFN
Sbjct:  628 DLVPKTIMCFMVNHAKDQVQNQLVSTLYKEEKLGELLRESGDIASRRANCSEMRTLLSKALDIVNEVRDFN 698
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig104421.365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVF0_ECTSI6.430e-2981.33Dnm1, dynamin-related GTPase involved in mitochond... [more]
A0A836CKP3_9STRA7.230e-2569.44Dynamin central region-domain-containing protein n... [more]
W7TS70_9STRA1.150e-2264.38Dynamin switch motor protein n=2 Tax=Monodopsidace... [more]
K0RKT6_THAOC3.490e-2064.38GED domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A2D4BI22_PYTIN4.700e-1963.01Dynamin-2 n=1 Tax=Pythium insidiosum TaxID=114742 ... [more]
A0A7S0KCE8_9STRA1.580e-1857.53Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S2V112_9STRA1.640e-1864.79Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A024TUW8_9STRA4.150e-1860.27Uncharacterized protein n=14 Tax=Aphanomyces TaxID... [more]
A0A7S0XCP8_9STRA1.060e-1760.56Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A485KTM0_9STRA3.680e-1760.56Aste57867_11655 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig104421contigH-elongata_contig104421:1060..2009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2.2e-20
Seed eggNOG ortholog2880.D7FVF0
Preferred nameDYN1
KEGG koko:K01528,ko:K17065
KEGG Pathwayko04072,ko04139,ko04144,ko04214,ko04217,ko04621,ko04668,ko04721,ko04961,ko05100,map04072,map04139,map04144,map04214,map04217,map04621,map04668,map04721,map04961,map05100
GOsGO:0000166,GO:0000266,GO:0000920,GO:0001882,GO:0001883,GO:0001891,GO:0003373,GO:0003374,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005522,GO:0005525,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005886,GO:0006508,GO:0006807,GO:0006810,GO:0006873,GO:0006885,GO:0006897,GO:0006907,GO:0006909,GO:0006996,GO:0006997,GO:0007005,GO:0007010,GO:0007015,GO:0007032,GO:0007163,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008289,GO:0009653,GO:0009987,GO:0010256,GO:0010467,GO:0015631,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016485,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0030004,GO:0030029,GO:0030036,GO:0030139,GO:0030587,GO:0030641,GO:0031090,GO:0031288,GO:0031410,GO:0031966,GO:0031967,GO:0031975,GO:0031982,GO:0032153,GO:0032154,GO:0032155,GO:0032502,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034622,GO:0035639,GO:0036094,GO:0042592,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044656,GO:0045335,GO:0045851,GO:0048285,GO:0048311,GO:0048312,GO:0048856,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051258,GO:0051301,GO:0051452,GO:0051453,GO:0051604,GO:0051640,GO:0051641,GO:0051646,GO:0051703,GO:0051704,GO:0055067,GO:0055080,GO:0055082,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0071944,GO:0090066,GO:0090148,GO:0090382,GO:0090383,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098590,GO:0098657,GO:0098771,GO:0099120,GO:1900756,GO:1901265,GO:1901363,GO:1901564
EggNOG free text desc.mitochondrial fission
EggNOG OGsCOG0699@1,KOG0446@2759
EC3.6.5.5
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig104421.365.1prot_H-elongata_contig104421.365.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig104421 1060..1985 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.1534512-CDS-H-elongata_contig104421:1059..12271622929577.1534512-CDS-H-elongata_contig104421:1059..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104421 1060..1227 -
1691679077.5148854-CDS-H-elongata_contig104421:1059..12271691679077.5148854-CDS-H-elongata_contig104421:1059..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104421 1060..1227 -
1622929577.1653237-CDS-H-elongata_contig104421:1946..19851622929577.1653237-CDS-H-elongata_contig104421:1946..1985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104421 1947..1985 -
1691679077.5259182-CDS-H-elongata_contig104421:1946..19851691679077.5259182-CDS-H-elongata_contig104421:1946..1985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104421 1947..1985 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.1775637-UTR-H-elongata_contig104421:1985..20091622929577.1775637-UTR-H-elongata_contig104421:1985..2009Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104421 1986..2009 -
1691679077.5346556-UTR-H-elongata_contig104421:1985..20091691679077.5346556-UTR-H-elongata_contig104421:1985..2009Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104421 1986..2009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig104421.365.1

>prot_H-elongata_contig104421.365.1 ID=prot_H-elongata_contig104421.365.1|Name=mRNA_H-elongata_contig104421.365.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MHFLVNDVVNMLQNELVSTLYKEDLTGELMRETDDVAERRRISRDMLVLL
EKASGIVNEVRDFNPFLT*
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mRNA from alignment at H-elongata_contig104421:1060..2009-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig104421.365.1 ID=mRNA_H-elongata_contig104421.365.1|Name=mRNA_H-elongata_contig104421.365.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=950bp|location=Sequence derived from alignment at H-elongata_contig104421:1060..2009- (Himanthalia elongata Himel1 dioecious)
CAGGATCTCGTACCCAAGGCCATCATGCACTTCCTTGTGAACGACGTGGT
GAACATGCTCCAGGTCAGAGGAGAGGCGGGGCGGGGAAAGCCGCCGCAAG
CAAATGGTGTTGAAATCTTTTTTTTTTATTGGTTTCTTTTTTTCCCTGGT
GTATCATGCCATTTGCCCTTTTTACCCCTTTCTAGGTGATGTTTCCATAT
TTTTTTCTATGCTATTCTATTTATATTTAAAAAAATGGTGGCGCTTGTTC
GTATCTGCGCGAAATGGTACTCCCGCACCGAGTTCCATATCACACCCACC
CGCACGAAGTAAGTTGCACTAGCGCCCCTCCCCCCCCCCCTTCCAATAAA
AAAGAGGGGAAAAAAGCGTTTTGCGGGTGTTAAAGAGTCCCTCTACCCCT
TCTCGCCGACCCTCTACCACTTGTACCGTGGCTCCGTTGCCCTTTCAGGC
TGGCAGAGCTACCACCTGTTTAGAACGTGTTTATATTTTAGCCGTGCGAA
GCGCATGCCACTTTTTATGCATAAAAATGTAGCGAGCTAGGCGTCGTACC
GTACGTCACATGCGTCGTACCGTACGTCACATGCTGGACACAAGTGGCAT
CGTGATTTGCTGGCCGATCGTGTTTTCGCTAGCTTGAAGATTTCTCCTTT
TAATCTCTCTCTCTGTTTCTCTTTCTGTCATAGTCTTTACTAAAAATATA
ATATGTTATTTTGTCCCCTATGCTGCAAAACACGCATTTTGGTTATGGTT
ATGATTATGGTGATACCCTCTCCTCCGTGAAGAACGAGCTGGTGTCGACG
CTGTACAAGGAAGACTTGACCGGGGAGCTTATGCGAGAAACAGACGACGT
CGCCGAGCGACGGCGCATCTCTAGGGACATGCTTGTGCTTCTCGAGAAGG
CGTCCGGTATCGTCAACGAAGTGCGCGACTTCAACCCTTTTCTAACATGA
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Coding sequence (CDS) from alignment at H-elongata_contig104421:1060..2009-

>mRNA_H-elongata_contig104421.365.1 ID=mRNA_H-elongata_contig104421.365.1|Name=mRNA_H-elongata_contig104421.365.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig104421:1060..2009- (Himanthalia elongata Himel1 dioecious)
ATGCACTTCCTTGTGAACGACGTGGTGAACATGCTCCAGATGCACTTCCT
TGTGAACGACGTGGTGAACATGCTCCAGAACGAGCTGGTGTCGACGCTGT
ACAAGGAAGACTTGACCGGGGAGCTTATGCGAGAAACAGACGACGTCGCC
GAGCGACGGCGCATCTCTAGGGACATGCTTGTGCTTCTCGAGAAGGCGTC
CGGTATCGTCAACGAAGTGCGCGACTTCAACCCTTTTCTAACATGAAACG
AGCTGGTGTCGACGCTGTACAAGGAAGACTTGACCGGGGAGCTTATGCGA
GAAACAGACGACGTCGCCGAGCGACGGCGCATCTCTAGGGACATGCTTGT
GCTTCTCGAGAAGGCGTCCGGTATCGTCAACGAAGTGCGCGACTTCAACC
CTTTTCTAACATGA
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