mRNA_H-elongata_contig104407.362.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig104407.362.1
Unique NamemRNA_H-elongata_contig104407.362.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig104407.362.1 vs. uniprot
Match: D7FJJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ1_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 3.850e-95
Identity = 142/170 (83.53%), Postives = 159/170 (93.53%), Query Frame = 1 
Query:    1 QVEMEEPQLFAKELDFTLGFEIIYITKEFTVFQMYWHYTWVLITLIFMFVPKIGFFYEMMQLHQNFWSRQQARVAILMLALLFFNNVFFGAQILSPFPRFFFSLYVIFVATFIALMLFFWLELFGDLAAGNMQGTDTALEWERNRKKTILEYLPKLVLVGLIWAVTILVY 510
            QV+M+EPQLF+   +FTL FEI+YITKEFT +QMYWHY W++ITL+FMFVPKIGFFYEMMQLHQNFWSRQQARV +L+L+LLFFNNVFFG QI SPFPRFFFSLY++FVATF+ALMLFFWLELFGDLAAGNMQGTDTALEWERNRKKT+LEYLPKLVLVGLIW VT+L Y
Sbjct:  172 QVDMQEPQLFSNAPEFTLDFEIVYITKEFTTYQMYWHYGWIVITLVFMFVPKIGFFYEMMQLHQNFWSRQQARVGVLLLSLLFFNNVFFGFQIFSPFPRFFFSLYIVFVATFLALMLFFWLELFGDLAAGNMQGTDTALEWERNRKKTVLEYLPKLVLVGLIWIVTVLTY 341
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BLAST of mRNA_H-elongata_contig104407.362.1 vs. uniprot
Match: A0A6H5L106_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L106_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 6.980e-33
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:   10 MEEPQLFAKELDFTLGFEIIYITKEFTVFQMYWHYTWVLITLIFMFVPKIGFFYEMMQLHQNFWSRQQ 213
            M+EPQ+F+   +FTL FEI+YITKEFT +QMYWHY W++ITL+FMFVPKIGFFYEMMQLHQNFWSRQQ
Sbjct:    1 MQEPQIFSNAPEFTLAFEIVYITKEFTTYQMYWHYAWIVITLVFMFVPKIGFFYEMMQLHQNFWSRQQ 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig104407.362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJJ1_ECTSI3.850e-9583.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L106_9PHAE6.980e-3377.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig104407contigH-elongata_contig104407:262..1875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_006310.1
Exons4
Model size516
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig104407.362.1prot_H-elongata_contig104407.362.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig104407 262..1866 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929576.9047945-CDS-H-elongata_contig104407:261..3781622929576.9047945-CDS-H-elongata_contig104407:261..378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104407 262..378 -
1691679077.427273-CDS-H-elongata_contig104407:261..3781691679077.427273-CDS-H-elongata_contig104407:261..378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104407 262..378 -
1622929576.9183042-CDS-H-elongata_contig104407:901..9921622929576.9183042-CDS-H-elongata_contig104407:901..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104407 902..992 -
1691679077.434578-CDS-H-elongata_contig104407:901..9921691679077.434578-CDS-H-elongata_contig104407:901..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104407 902..992 -
1622929576.933973-CDS-H-elongata_contig104407:1215..13101622929576.933973-CDS-H-elongata_contig104407:1215..1310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104407 1216..1310 -
1691679077.444406-CDS-H-elongata_contig104407:1215..13101691679077.444406-CDS-H-elongata_contig104407:1215..1310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104407 1216..1310 -
1622929576.9478383-CDS-H-elongata_contig104407:1662..18661622929576.9478383-CDS-H-elongata_contig104407:1662..1866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104407 1663..1866 -
1691679077.453892-CDS-H-elongata_contig104407:1662..18661691679077.453892-CDS-H-elongata_contig104407:1662..1866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104407 1663..1866 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929576.966427-UTR-H-elongata_contig104407:1866..18751622929576.966427-UTR-H-elongata_contig104407:1866..1875Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104407 1867..1875 -
1691679077.4628308-UTR-H-elongata_contig104407:1866..18751691679077.4628308-UTR-H-elongata_contig104407:1866..1875Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104407 1867..1875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig104407.362.1

>prot_H-elongata_contig104407.362.1 ID=prot_H-elongata_contig104407.362.1|Name=mRNA_H-elongata_contig104407.362.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
MEEPQLFAKELDFTLGFEIIYITKEFTVFQMYWHYTWVLITLIFMFVPKI
GFFYEMMQLHQNFWSRQQARVAILMLALLFFNNVFFGAQILSPFPRFFFS
LYVIFVATFIALMLFFWLELFGDLAAGNMQGTDTALEWERNRKKTILEYL
PKLVLVGLIWAVTILVYM*
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mRNA from alignment at H-elongata_contig104407:262..1875-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig104407.362.1 ID=mRNA_H-elongata_contig104407.362.1|Name=mRNA_H-elongata_contig104407.362.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1614bp|location=Sequence derived from alignment at H-elongata_contig104407:262..1875- (Himanthalia elongata Himel1 dioecious)
CAGGTGGAAATGGAGGAGCCTCAGCTCTTCGCAAAAGAGCTTGACTTCAC
ACTGGGCTTTGAAATAATATACATCACGAAGGAGTTCACGGTGTTCCAGA
TGTATTGGCACTACACCTGGGTTCTGATCACCTTGATATTCATGTTCGTT
CCCAAGATCGGGTTCTTTTACGAGATGATGCAGCTCCACCAGAACTTTTG
GTCGAGGCAACAGGTGAGAGCGCCCTTCACCCCTTTCCTTACATTCCCTT
AACCCCTTTTCCCCAGCAGTCAAGTGTCAAGTGTCAAGTCGCACCTTGTG
ATGAGTGAAGCAAAGATCTATTTGGTTTTGTATTTTTGAATGCGTTGAAT
ATCTTCCAAACAAGCCATGTTGCACTCCAAAGTGCATGGCGGACGTAAAC
ATAATTTGCTATAAATACGGCCTAGTTGTCCTTGTTGCTTGTTGCGTTTT
GATACTCACGAGCGAGTTCGAGTGTGAAGCATTATTTCCCCTCAATGTTG
GACTGGACTCGAAGGTTTGGGATAACGCCGACCTTGTTCTTTTCTTGCCT
GTGTGGTGCACACAGGCTCGTGTGGCAATCTTGATGCTGGCGCTTCTTTT
CTTCAACAACGTGTTCTTCGGTGCGCAAATCTTATCGCCATTCCCTCGCT
TCTTCTTCAGGTTGGTTAGTAAATTAGTAAACGTAATCATGCTTAGGAGC
AATGTAGTGATATTGAGCCAGTTTTTAACTTGAGCAACGTAGTGATATTC
CGCACTTTGAAGTGGCTGCACAAAGACATACCGGATACCGGTATCAAAGA
CATTCTACTGTTATTAACAGAAGAGCAGATGCCTCATGACCATAAAATCT
CCTGCTTGGAATTTGCCCTTGTTTACATTGCAGTCTTTACGTGATCTTCG
TGGCGACTTTTATCGCTCTGATGCTCTTCTTTTGGTTGGAACTTTTCGGA
GACCTGGCCGCTGGAAATATGCAGGTTCGTAAAATATTGTTATTAAGTGT
GTCGTACCGTACCCGTACGTGCTACGCCCTATTTTTAATAGGTCTTTAAA
GTGCTAATACTAATACTAATACTAGTACTAATACTACTAGTACTAATACT
AATGCCGCACCCAACGTTGGCCATTTTGGAGCTTGATCAGTTCTTGAAGT
ACAAATGAGATTTTTTCACTTGGTAGCGCGAAAAAGGCGGATGCTTGATT
GAGTTCTCTTTACCCCTGCATTTGATTTGATGTTGTTTCCGACAGTGAAC
TTATCCGCAGCGCGTAACGTCTATTGATATTGGTATATTGCTATTACTAT
TGCTATTACTGCCCTGTCGCTATTGATAATTATATATCTAATGTTGCCAA
TGTTTCGTATTTCCTGTCTTATGGTATGTAATAAAAGTAGGAAATTCGCA
GCTTGTGGTGTCTTTTTCACGACTTTGTGATGTCTGTATGAGGTCATTTT
GTGATAATCTTTGTAATGGCATTTATGAACTTCTCGCCGCTCGCCAGGGA
ACCGACACAGCGTTGGAATGGGAGCGTAATCGCAAGAAGACGATCCTCGA
GTACCTGCCTAAGCTTGTACTGGTGGGGCTGATATGGGCTGTTACTATCC
TCGTTTACATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig104407:262..1875-

>mRNA_H-elongata_contig104407.362.1 ID=mRNA_H-elongata_contig104407.362.1|Name=mRNA_H-elongata_contig104407.362.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig104407:262..1875- (Himanthalia elongata Himel1 dioecious)
ATGGAGGAGCCTCAGCTCTTCGCAAAAGAGCTTGACTTCACACTGGGCTT
TGAAATAATATACATCACGAAGGAGTTCACGGTGTTCCAGATGTATTGGC
ACTACACCTGGGTTCTGATCACCTTGATATTCATGTTCGTTCCCAAGATC
GGGTTCTTTTACGAGATGATGCAGCTCCACCAGAACTTTTGGTCGAGGCA
ACAGATGGAGGAGCCTCAGCTCTTCGCAAAAGAGCTTGACTTCACACTGG
GCTTTGAAATAATATACATCACGAAGGAGTTCACGGTGTTCCAGATGTAT
TGGCACTACACCTGGGTTCTGATCACCTTGATATTCATGTTCGTTCCCAA
GATCGGGTTCTTTTACGAGATGATGCAGCTCCACCAGAACTTTTGGTCGA
GGCAACAGGCTCGTGTGGCAATCTTGATGCTGGCGCTTCTTTTCTTCAAC
AACGTGTTCTTCGGTGCGCAAATCTTATCGCCATTCCCTCGCTTCTTCTT
CAGGCTCGTGTGGCAATCTTGATGCTGGCGCTTCTTTTCTTCAACAACGT
GTTCTTCGGTGCGCAAATCTTATCGCCATTCCCTCGCTTCTTCTTCAGTC
TTTACGTGATCTTCGTGGCGACTTTTATCGCTCTGATGCTCTTCTTTTGG
TTGGAACTTTTCGGAGACCTGGCCGCTGGAAATATGCAGTCTTTACGTGA
TCTTCGTGGCGACTTTTATCGCTCTGATGCTCTTCTTTTGGTTGGAACTT
TTCGGAGACCTGGCCGCTGGAAATATGCAGGGAACCGACACAGCGTTGGA
ATGGGAGCGTAATCGCAAGAAGACGATCCTCGAGTACCTGCCTAAGCTTG
TACTGGTGGGGCTGATATGGGCTGTTACTATCCTCGTTTACATGTGAGGA
ACCGACACAGCGTTGGAATGGGAGCGTAATCGCAAGAAGACGATCCTCGA
GTACCTGCCTAAGCTTGTACTGGTGGGGCTGATATGGGCTGTTACTATCC
TCGTTTACATGTGA
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