mRNA_H-elongata_contig10440.361.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10440.361.1
Unique NamemRNA_H-elongata_contig10440.361.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10440.361.1 vs. uniprot
Match: D7G599_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G599_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 8.460e-95
Identity = 152/224 (67.86%), Postives = 178/224 (79.46%), Query Frame = 1 
Query:    1 FYPSDSFTGVKRGYVFKLGDQGLGFYIDGYVDNSKKEKRIIVRRPWNAGPGDDAIRRGPLGPVHKPFKEIKPLRDRSQQDASNEADDSRPFMARMVAQRNSRTFENTLLGRQHALDRRILALLENVFDPTFFKKKHGYNVHGEMLGKDGKMIVKPKAIKTEEEKAKLSWYRKIYEDQLGEHLPTKRLGDSIEARREAYAYSRHFTAQINYRQDRLNEGLTKALE 672
            F  S  FTG K GYVFK GD+GLGFY+DGYVD   + KR +  RPWNAGPG+ A +RGPLGP  KPFK+I P R + ++ A+ E +D+RPFMARMVAQRNSR F++ L  R+  LD+ IL LLE   DP FFKKKHGYNVHG+MLGKDGKMIVK    KTEEEKA+L WYRK+YED+LG+HLP+KRLGDSIEARREAYAYSRHFTA+I+ RQD LN  LTKAL+
Sbjct:  178 FVSSSCFTGAKDGYVFKTGDKGLGFYVDGYVDRQARRKRSLSHRPWNAGPGEQATKRGPLGPAPKPFKKIVPYRTQKEKRAAEE-NDTRPFMARMVAQRNSRGFQSNLFERERVLDKHILYLLEKFSDPAFFKKKHGYNVHGQMLGKDGKMIVKVTPEKTEEEKARLPWYRKVYEDRLGKHLPSKRLGDSIEARREAYAYSRHFTAEIDGRQDELNRALTKALK 400
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BLAST of mRNA_H-elongata_contig10440.361.1 vs. uniprot
Match: A0A6H5JWU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU4_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 7.660e-58
Identity = 99/154 (64.29%), Postives = 118/154 (76.62%), Query Frame = 1 
Query:    1 FYPSDSFTGVKRGYVFKLGDQGLGFYIDGYVDNSKKEKRIIVRRPWNAGPGDDAIRRGPLGPVHKPFKEIKPLRDRSQQDASNEADDSRPFMARMVAQRNSRTFENTLLGRQHALDRRILALLENVFDPTFFKKKHGYNVHGEMLGKDGKMIVK 462
            F  S  FTG K GYVFK GD+GLGFY+DGYVD   + KR +  RPWNAGPG++A +RGPLGP  KPFK+I P R + ++ A+ E +D+RPFMARMVAQRNSR F++ L  R+  LD+ IL LLE   DP FFKKKHGYNVHG+MLGKDGKMIVK
Sbjct:  177 FISSSCFTGAKDGYVFKTGDKGLGFYVDGYVDRQVRRKRSLSHRPWNAGPGEEATKRGPLGPAPKPFKKIVPYRTQKEKRAAEE-NDTRPFMARMVAQRNSRGFQSNLFERERVLDKHILYLLEKFSDPAFFKKKHGYNVHGQMLGKDGKMIVK 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10440.361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G599_ECTSI8.460e-9567.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWU4_9PHAE7.660e-5864.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10440contigH-elongata_contig10440:285..1377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_006740.1
Exons3
Model size672
Cds size672
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10440.361.1prot_H-elongata_contig10440.361.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10440 285..1377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929576.7359414-CDS-H-elongata_contig10440:284..4941622929576.7359414-CDS-H-elongata_contig10440:284..494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10440 285..494 -
1691679077.4049976-CDS-H-elongata_contig10440:284..4941691679077.4049976-CDS-H-elongata_contig10440:284..494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10440 285..494 -
1622929576.861395-CDS-H-elongata_contig10440:711..9101622929576.861395-CDS-H-elongata_contig10440:711..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10440 712..910 -
1691679077.4125195-CDS-H-elongata_contig10440:711..9101691679077.4125195-CDS-H-elongata_contig10440:711..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10440 712..910 -
1622929576.8726146-CDS-H-elongata_contig10440:1114..13771622929576.8726146-CDS-H-elongata_contig10440:1114..1377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10440 1115..1377 -
1691679077.4196908-CDS-H-elongata_contig10440:1114..13771691679077.4196908-CDS-H-elongata_contig10440:1114..1377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10440 1115..1377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10440.361.1

>prot_H-elongata_contig10440.361.1 ID=prot_H-elongata_contig10440.361.1|Name=mRNA_H-elongata_contig10440.361.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp
FYPSDSFTGVKRGYVFKLGDQGLGFYIDGYVDNSKKEKRIIVRRPWNAGP
GDDAIRRGPLGPVHKPFKEIKPLRDRSQQDASNEADDSRPFMARMVAQRN
SRTFENTLLGRQHALDRRILALLENVFDPTFFKKKHGYNVHGEMLGKDGK
MIVKPKAIKTEEEKAKLSWYRKIYEDQLGEHLPTKRLGDSIEARREAYAY
SRHFTAQINYRQDRLNEGLTKALE
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mRNA from alignment at H-elongata_contig10440:285..1377-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10440.361.1 ID=mRNA_H-elongata_contig10440.361.1|Name=mRNA_H-elongata_contig10440.361.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1093bp|location=Sequence derived from alignment at H-elongata_contig10440:285..1377- (Himanthalia elongata Himel1 dioecious)
TTTTATCCTTCTGACTCCTTCACTGGTGTGAAACGCGGTTACGTCTTCAA
GCTCGGCGACCAGGGACTTGGCTTCTACATTGATGGATACGTTGACAACT
CGAAGAAAGAGAAGCGAATTATCGTGCGTCGACCATGGAACGCTGGACCT
GGAGATGATGCAATTAGACGCGGACCACTTGGGCCGGTGCACAAGCCGTT
CAAGGAAATCAAGCCCCTTCGCGACCGCAGTCAGCAGGACGCCTCCAATG
AAGCCGATGACTCGTGAGACACTATATATACCGCAGATCGTGTTGACGTG
TCCTGCACGCGGTACGATTAGCGCGCCACGGGGAACGCGTCACACATGGT
GCACGTTTCACGGAAACAGGTAGTATGTTTCCTATGTAGAGTTATTGTCT
TATTATATAGAATATCAGTGATGTTAATACTTGAATCCTGACGATTCCCC
TCCCGGATTTCAAGTAGGCGACCGTTCATGGCGAGGATGGTAGCACAACG
AAACTCTCGGACTTTTGAGAATACTCTCCTGGGCAGACAACACGCACTCG
ACAGGCGGATCCTTGCGTTGCTGGAAAATGTATTCGACCCGACCTTCTTC
AAAAAGAAACATGGGTACAACGTACACGGGGAAATGTTGGGGAAAGATGG
CAAGATGATAGTGAAGGTGTGTAGGAAAACGAGTCGAGTGCAGGGATCCC
TTTCCAAAATCCGAGCGACTCTCGATCTAGAATTGAGGACGGCTTTGAAA
CGCTCATGCGTTGATATGCTTGTGATGACAAACATGAGATCCCTAGTTCG
CTCGGTGCGTGCACGGATCCTCGCCACTTACTCGCTTAACGGACTTACAT
AGTGCGTAATAACGTAACCTGTTTATGGTGCAGCCCAAGGCAATCAAGAC
GGAAGAGGAGAAGGCGAAGCTTTCGTGGTACCGCAAGATATACGAAGACC
AACTCGGGGAACACCTTCCCACCAAGAGATTGGGCGATAGCATCGAAGCG
AGGAGGGAGGCTTATGCGTATTCTAGGCACTTTACGGCACAGATCAACTA
TAGGCAAGACCGACTAAACGAAGGGCTCACGAAGGCTTTGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig10440:285..1377-

>mRNA_H-elongata_contig10440.361.1 ID=mRNA_H-elongata_contig10440.361.1|Name=mRNA_H-elongata_contig10440.361.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at H-elongata_contig10440:285..1377- (Himanthalia elongata Himel1 dioecious)
TTTTATCCTTCTGACTCCTTCACTGGTGTGAAACGCGGTTACGTCTTCAA
GCTCGGCGACCAGGGACTTGGCTTCTACATTGATGGATACGTTGACAACT
CGAAGAAAGAGAAGCGAATTATCGTGCGTCGACCATGGAACGCTGGACCT
GGAGATGATGCAATTAGACGCGGACCACTTGGGCCGGTGCACAAGCCGTT
CAAGGAAATCAAGCCCCTTCGCGACCGCAGTCAGCAGGACGCCTCCAATG
AAGCCGATGACTCTTTTATCCTTCTGACTCCTTCACTGGTGTGAAACGCG
GTTACGTCTTCAAGCTCGGCGACCAGGGACTTGGCTTCTACATTGATGGA
TACGTTGACAACTCGAAGAAAGAGAAGCGAATTATCGTGCGTCGACCATG
GAACGCTGGACCTGGAGATGATGCAATTAGACGCGGACCACTTGGGCCGG
TGCACAAGCCGTTCAAGGAAATCAAGCCCCTTCGCGACCGCAGTCAGCAG
GACGCCTCCAATGAAGCCGATGACTCGCGACCGTTCATGGCGAGGATGGT
AGCACAACGAAACTCTCGGACTTTTGAGAATACTCTCCTGGGCAGACAAC
ACGCACTCGACAGGCGGATCCTTGCGTTGCTGGAAAATGTATTCGACCCG
ACCTTCTTCAAAAAGAAACATGGGTACAACGTACACGGGGAAATGTTGGG
GAAAGATGGCAAGATGATAGTGAAGGCGACCGTTCATGGCGAGGATGGTA
GCACAACGAAACTCTCGGACTTTTGAGAATACTCTCCTGGGCAGACAACA
CGCACTCGACAGGCGGATCCTTGCGTTGCTGGAAAATGTATTCGACCCGA
CCTTCTTCAAAAAGAAACATGGGTACAACGTACACGGGGAAATGTTGGGG
AAAGATGGCAAGATGATAGTGAAGCCCAAGGCAATCAAGACGGAAGAGGA
GAAGGCGAAGCTTTCGTGGTACCGCAAGATATACGAAGACCAACTCGGGG
AACACCTTCCCACCAAGAGATTGGGCGATAGCATCGAAGCGAGGAGGGAG
GCTTATGCGTATTCTAGGCACTTTACGGCACAGATCAACTATAGGCAAGA
CCGACTAAACGAAGGGCTCACGAAGGCTTTGGAGCCCAAGGCAATCAAGA
CGGAAGAGGAGAAGGCGAAGCTTTCGTGGTACCGCAAGATATACGAAGAC
CAACTCGGGGAACACCTTCCCACCAAGAGATTGGGCGATAGCATCGAAGC
GAGGAGGGAGGCTTATGCGTATTCTAGGCACTTTACGGCACAGATCAACT
ATAGGCAAGACCGACTAAACGAAGGGCTCACGAAGGCTTTGGAG
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