mRNA_H-elongata_contig1044.360.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1044.360.1
Unique NamemRNA_H-elongata_contig1044.360.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1044.360.1 vs. uniprot
Match: D8LBY7_ECTSI (Heat shock protein 70 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBY7_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 4.430e-46
Identity = 87/127 (68.50%), Postives = 105/127 (82.68%), Query Frame = 1
Query:    1 ADGILHICTNNKQTAKKQSMIIQSSGGLGDAAIDKIGSDTEKHAEMDKEQRDFIEAKNNADSAVYGTEKNLMEHKDRILEGVKTEMQKAIDDVKMVQESEDAENINANVQAFQTAALKIGRDIYGNK 381
            ADGILH+   +KQT K+QS++IQSSGGLG+A I+K+  D E+HAE DK++RD IEAKN+ADSAVYGTEKNL+EHKD+I E VK ++QKAID++K V ESEDAE I   VQA QTAALKIG  IYGNK
Sbjct:  520 ADGILHVGAKDKQTGKEQSIVIQSSGGLGEADIEKMVRDAEEHAEADKKRRDLIEAKNSADSAVYGTEKNLLEHKDKIPEDVKADVQKAIDELKAVMESEDAEQIKEKVQALQTAALKIGEAIYGNK 646          
BLAST of mRNA_H-elongata_contig1044.360.1 vs. uniprot
Match: A0A7S2URZ1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URZ1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.360e-26
Identity = 57/125 (45.60%), Postives = 86/125 (68.80%), Query Frame = 1
Query:    1 ADGILHICTNNKQTAKKQSMIIQSSGGLGDAAIDKIGSDTEKHAEMDKEQRDFIEAKNNADSAVYGTEKNLMEHKDRILEGVKTEMQKAIDDVKMVQESEDAENINANVQAFQTAALKIGRDIYG 375
            ADGIL++   +K T K+Q++II+SSGGL +  I+K+  D E +AE D  +R  IE+KN  DS +Y TEK+L EHK+++ + VK E++KA++D K V++ +D E + A   A   A LKIG+ +YG
Sbjct:  524 ADGILNVSAKDKGTGKEQTIIIKSSGGLSEDDIEKMVRDAEANAEADATRRQVIESKNEIDSLIYSTEKSLTEHKEKLSDEVKAEIEKAVEDAKAVKDGDDLEELKAKTAALNEATLKIGQAVYG 648          
BLAST of mRNA_H-elongata_contig1044.360.1 vs. uniprot
Match: W7U263_9STRA (Heat shock protein 70 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U263_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.740e-26
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 ADGILHICTNNKQTAKKQSMIIQSSGGLGDAAIDKIGSDTEKHAEMDKEQRDFIEAKNNADSAVYGTEKNLMEHKDRILEGVKTEMQKAIDDVKMVQESEDAENINANVQAFQTAALKIGRDIYG 375
            ADGI+H+   +K T K+Q+++IQSSGGL +  I  +  D E H   D+E++  IEA+N ADS VY TEK+L EH  ++ + VK E+Q  I + K   E EDAE +   V+A Q AALKIG  IYG
Sbjct:  518 ADGIMHVSAKDKGTGKEQAIVIQSSGGLNEDEIQNMVKDAEAHKAADEERKKLIEARNEADSLVYSTEKSLTEHGAKLSDEVKEEIQNTIAEAKKALEGEDAELLQEKVKALQQAALKIGEAIYG 642          
BLAST of mRNA_H-elongata_contig1044.360.1 vs. uniprot
Match: A0A259JZR2_9SPHN (Molecular chaperone DnaK (Fragment) n=1 Tax=Erythrobacter sp. 34-65-8 TaxID=1970335 RepID=A0A259JZR2_9SPHN)

HSP 1 Score: 104 bits (259), Expect = 7.770e-26
Identity = 56/124 (45.16%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 ADGILHICTNNKQTAKKQSMIIQSSGGLGDAAIDKIGSDTEKHAEMDKEQRDFIEAKNNADSAVYGTEKNLMEHKDRILEGVKTEMQKAIDDVKMVQESEDAENINANVQAFQTAALKIGRDIY 372
            A+GI+++   +K T K+Q + IQ+SGGL DA ID++  D EK AE DK++R+  EA+N ADS V+ TEK L EH D+I   +K +++ AI + K   E +DA  IN+  QA    A+K+G++IY
Sbjct:    7 ANGIVNVSAKDKGTGKEQQIRIQASGGLTDADIDQMVKDAEKFAEEDKQRREKAEARNQADSLVHATEKQLAEHGDKISADLKAQVEAAIAETKTALEGDDAGEINSKAQALTEVAMKMGQEIY 130          
BLAST of mRNA_H-elongata_contig1044.360.1 vs. uniprot
Match: UPI001F00A05A (molecular chaperone DnaK n=1 Tax=Candidatus Cyrtobacter zanobii TaxID=1222017 RepID=UPI001F00A05A)

HSP 1 Score: 110 bits (275), Expect = 1.150e-25
Identity = 55/124 (44.35%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 ADGILHICTNNKQTAKKQSMIIQSSGGLGDAAIDKIGSDTEKHAEMDKEQRDFIEAKNNADSAVYGTEKNLMEHKDRILEGVKTEMQKAIDDVKMVQESEDAENINANVQAFQTAALKIGRDIY 372
            A+GILH+   ++ T K+Q + IQSSGGL D+ IDK+  + E+HA+ D ++++ ++ KN ADS +Y TEKNL EH  ++ +G K E++ AI  +K    S DAE++ + +QA  TA++KIG  IY
Sbjct:  475 ANGILHVSARDRATNKEQRITIQSSGGLSDSEIDKMVKEAEQHADEDNKRKELVDLKNQADSLIYNTEKNLREHAAKLSDGEKKEVEDAISSLKDSLSSGDAEDLKSKIQALTTASMKIGEKIY 598          
BLAST of mRNA_H-elongata_contig1044.360.1 vs. uniprot
Match: A0A257YIM8_9SPHN (Chaperone protein DnaK n=9 Tax=Sphingomonadales TaxID=204457 RepID=A0A257YIM8_9SPHN)

HSP 1 Score: 109 bits (273), Expect = 2.170e-25
Identity = 60/124 (48.39%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    1 ADGILHICTNNKQTAKKQSMIIQSSGGLGDAAIDKIGSDTEKHAEMDKEQRDFIEAKNNADSAVYGTEKNLMEHKDRILEGVKTEMQKAIDDVKMVQESEDAENINANVQAFQTAALKIGRDIY 372
            A+GI+++   +K T K+Q + IQ+SGGL DA ID++  D EK AE DK++RD  EAKNNADS V+ TEK L EH D+I  G+K+E++ AI + K   + +D E I A  QA    A+K+G+ IY
Sbjct:  479 ANGIVNVSAKDKGTGKEQQIRIQASGGLSDADIDQMVRDAEKFAEEDKKRRDSAEAKNNADSLVHATEKQLAEHGDKIDAGLKSEIESAIAETKTALQGDDVEAIKAKAQALTDLAMKMGQAIY 602          
BLAST of mRNA_H-elongata_contig1044.360.1 vs. uniprot
Match: A0A2K3DDD4_CHLRE (Uncharacterized protein n=10 Tax=Chlamydomonadales TaxID=3042 RepID=A0A2K3DDD4_CHLRE)

HSP 1 Score: 109 bits (272), Expect = 3.020e-25
Identity = 56/123 (45.53%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 ADGILHICTNNKQTAKKQSMIIQSSGGLGDAAIDKIGSDTEKHAEMDKEQRDFIEAKNNADSAVYGTEKNLMEHKDRILEGVKTEMQKAIDDVKMVQESEDAENINANVQAFQTAALKIGRDI 369
            A+GI+H+   +K T K+QS+ IQSSGGL D  I+++  D E +AE DK +++ IEAKN AD+A+Y TEK+L E+K ++ + V  E+QKAI + +   +SED  ++ A +QA  TA++KIG  +
Sbjct:  512 ANGIVHVSAKDKATGKEQSVRIQSSGGLSDDQINQMVRDAETYAEKDKTRKELIEAKNEADTAIYTTEKSLAEYKSKLPQAVVDEIQKAITECRAASQSEDLPDLKAKIQALSTASMKIGETL 634          
BLAST of mRNA_H-elongata_contig1044.360.1 vs. uniprot
Match: B5YMV8_THAPS (Chaperone, heat shock protein 70 n=2 Tax=Thalassiosirales TaxID=33847 RepID=B5YMV8_THAPS)

HSP 1 Score: 109 bits (272), Expect = 3.040e-25
Identity = 52/127 (40.94%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 ADGILHICTNNKQTAKKQSMIIQSSGGLGDAAIDKIGSDTEKHAEMDKEQRDFIEAKNNADSAVYGTEKNLMEHKDRILEGVKTEMQKAIDDVKMVQESEDAENINANVQAFQTAALKIGRDIYGNK 381
            ADGIL++   +K T K+Q++II+S GGL D  I+++  D E +A+ D +++  IE+KN  DS +Y TEK++ EH D++ E VKTE++KAI++ ++V++++D + + A  +A   A++K+G+ IYG +
Sbjct:  513 ADGILNVSAKDKGTGKEQNIIIKSCGGLSDDDIERMVRDAEVNADADAKKKQVIESKNEIDSLIYSTEKSVKEHADKLSEEVKTEVEKAIEEARLVKDNDDLDELKAKTEALSQASMKMGQAIYGQQ 639          
BLAST of mRNA_H-elongata_contig1044.360.1 vs. uniprot
Match: K0SWS5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SWS5_THAOC)

HSP 1 Score: 108 bits (269), Expect = 7.350e-25
Identity = 54/127 (42.52%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 ADGILHICTNNKQTAKKQSMIIQSSGGLGDAAIDKIGSDTEKHAEMDKEQRDFIEAKNNADSAVYGTEKNLMEHKDRILEGVKTEMQKAIDDVKMVQESEDAENINANVQAFQTAALKIGRDIYGNK 381
            ADGIL++   +K T K+Q++II+S GGL D  I+++  D E +AE D +++  IEAKN  DS +Y TEK+L EHKD++ +  K E++KAI++ K V+ES++ + + +  +A   A++K+G+ IYG +
Sbjct:  459 ADGILNVSAKDKGTGKEQNIIIKSCGGLSDDDIERMVRDAEVNAEADAQKKQAIEAKNEIDSLIYSTEKSLNEHKDKLDDEAKKEVEKAIEEAKSVKESDNLDELKSKTEALSQASMKMGQAIYGQQ 585          
BLAST of mRNA_H-elongata_contig1044.360.1 vs. uniprot
Match: D8S4L9_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S4L9_SELML)

HSP 1 Score: 108 bits (269), Expect = 7.510e-25
Identity = 55/123 (44.72%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 ADGILHICTNNKQTAKKQSMIIQSSGGLGDAAIDKIGSDTEKHAEMDKEQRDFIEAKNNADSAVYGTEKNLMEHKDRILEGVKTEMQKAIDDVKMVQESEDAENINANVQAFQTAALKIGRDI 369
            A+GI+++   +K T K+Q++ IQSSGGL ++ I+K+  + E +++ DKE+++ I+AKN+ADSA+Y TEK+L EHKD++   V T +Q A+ D+K   ESE  + I   + A QTAA+KIG  +
Sbjct:  485 ANGIVNVSARDKSTGKEQAITIQSSGGLTESDIEKMVKEAEIYSQKDKERKELIDAKNDADSAIYSTEKSLNEHKDKLPSDVVTAIQSAVADLKKAVESEKVDQIRQKISATQTAAMKIGETL 607          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1044.360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBY7_ECTSI4.430e-4668.50Heat shock protein 70 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7S2URZ1_9STRA1.360e-2645.60Hypothetical protein n=1 Tax=Attheya septentrional... [more]
W7U263_9STRA4.740e-2648.00Heat shock protein 70 n=2 Tax=Monodopsidaceae TaxI... [more]
A0A259JZR2_9SPHN7.770e-2645.16Molecular chaperone DnaK (Fragment) n=1 Tax=Erythr... [more]
UPI001F00A05A1.150e-2544.35molecular chaperone DnaK n=1 Tax=Candidatus Cyrtob... [more]
A0A257YIM8_9SPHN2.170e-2548.39Chaperone protein DnaK n=9 Tax=Sphingomonadales Ta... [more]
A0A2K3DDD4_CHLRE3.020e-2545.53Uncharacterized protein n=10 Tax=Chlamydomonadales... [more]
B5YMV8_THAPS3.040e-2540.94Chaperone, heat shock protein 70 n=2 Tax=Thalassio... [more]
K0SWS5_THAOC7.350e-2542.52Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
D8S4L9_SELML7.510e-2544.72Uncharacterized protein n=4 Tax=Selaginella moelle... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1044contigH-elongata_contig1044:14887..15267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score109.4
Seed ortholog evalue1.3e-21
Seed eggNOG ortholog3055.EDP02463
KEGG koko:K04043
KEGG TC1.A.33.1
KEGG Pathwayko03018,ko04212,ko05152,map03018,map04212,map05152
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Belongs to the heat shock protein 70 family
EggNOG OGs34H7W@3041,37PN3@33090,COG0443@1,KOG0102@2759
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03029,ko03110,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929576.7010357-CDS-H-elongata_contig1044:14886..152671622929576.7010357-CDS-H-elongata_contig1044:14886..15267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1044 14887..15267 +
1691679077.392924-CDS-H-elongata_contig1044:14886..152671691679077.392924-CDS-H-elongata_contig1044:14886..15267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1044 14887..15267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1044.360.1prot_H-elongata_contig1044.360.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1044 14887..15267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1044.360.1

>prot_H-elongata_contig1044.360.1 ID=prot_H-elongata_contig1044.360.1|Name=mRNA_H-elongata_contig1044.360.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
ADGILHICTNNKQTAKKQSMIIQSSGGLGDAAIDKIGSDTEKHAEMDKEQ
RDFIEAKNNADSAVYGTEKNLMEHKDRILEGVKTEMQKAIDDVKMVQESE
DAENINANVQAFQTAALKIGRDIYGNK
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mRNA from alignment at H-elongata_contig1044:14887..15267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1044.360.1 ID=mRNA_H-elongata_contig1044.360.1|Name=mRNA_H-elongata_contig1044.360.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=381bp|location=Sequence derived from alignment at H-elongata_contig1044:14887..15267+ (Himanthalia elongata Himel1 dioecious)
GCCGATGGGATCTTGCACATTTGCACTAATAACAAGCAGACAGCCAAGAA GCAGAGCATGATCATTCAAAGCTCCGGCGGCTTGGGAGACGCGGCCATCG ATAAGATAGGAAGCGACACCGAAAAGCACGCCGAAATGGACAAAGAGCAG AGGGATTTCATCGAGGCCAAGAATAACGCGGACTCTGCCGTATACGGTAC GGAGAAAAACCTGATGGAGCATAAGGACCGTATCCTTGAGGGTGTAAAGA CGGAGATGCAAAAGGCCATCGATGACGTCAAAATGGTACAGGAGTCGGAA GACGCGGAGAATATCAACGCCAACGTGCAGGCGTTCCAGACCGCAGCGCT CAAGATCGGACGAGATATCTACGGAAACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig1044:14887..15267+

>mRNA_H-elongata_contig1044.360.1 ID=mRNA_H-elongata_contig1044.360.1|Name=mRNA_H-elongata_contig1044.360.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig1044:14887..15267+ (Himanthalia elongata Himel1 dioecious)
GCCGATGGGATCTTGCACATTTGCACTAATAACAAGCAGACAGCCAAGAA
GCAGAGCATGATCATTCAAAGCTCCGGCGGCTTGGGAGACGCGGCCATCG
ATAAGATAGGAAGCGACACCGAAAAGCACGCCGAAATGGACAAAGAGCAG
AGGGATTTCATCGAGGCCAAGAATAACGCGGACTCTGCCGTATACGGTAC
GGAGAAAAACCTGATGGAGCATAAGGACCGTATCCTTGAGGGTGTAAAGA
CGGAGATGCAAAAGGCCATCGATGACGTCAAAATGGTACAGGAGTCGGAA
GACGCGGAGAATATCAACGCCAACGTGCAGGCGTTCCAGACCGCAGCGCT
CAAGATCGGACGAGATATCTACGGAAACAAGGCCGATGGGATCTTGCACA
TTTGCACTAATAACAAGCAGACAGCCAAGAAGCAGAGCATGATCATTCAA
AGCTCCGGCGGCTTGGGAGACGCGGCCATCGATAAGATAGGAAGCGACAC
CGAAAAGCACGCCGAAATGGACAAAGAGCAGAGGGATTTCATCGAGGCCA
AGAATAACGCGGACTCTGCCGTATACGGTACGGAGAAAAACCTGATGGAG
CATAAGGACCGTATCCTTGAGGGTGTAAAGACGGAGATGCAAAAGGCCAT
CGATGACGTCAAAATGGTACAGGAGTCGGAAGACGCGGAGAATATCAACG
CCAACGTGCAGGCGTTCCAGACCGCAGCGCTCAAGATCGGACGAGATATC
TACGGAAACAAG
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