mRNA_H-elongata_contig10421.353.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10421.353.1
Unique NamemRNA_H-elongata_contig10421.353.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10421.353.1 vs. uniprot
Match: D7G2H6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H6_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 3.860e-30
Identity = 86/209 (41.15%), Postives = 118/209 (56.46%), Query Frame = 1 
Query:  283 PSIPRSLLRGIKRRGASLSSLFWINSN-----VSESGFSDNTR------------------------------GENEDKRGGDDSRNGDGPPVPNGK--GDSNNTSSGIMEGGTDG-DINFLVPSPLAVVEFGEILFEVSRKEPRQTLLTAVRQMDEHPGILTYGQAMGGWGKLSVSSSALYLDDLPVPFLSTESIIWEGLFARGEMGG 795
            P  PR++ +G+++ GASLSSL    S+     +S+ G  DN R                              GE  D+ GG     G G     G+  GD  + +    +   DG   N     PLAV+  GEI FE+SRKEP+ TLL AVR++DEHPG +TYGQAMGGWGKLS+SS+A+YLD LPVP+L+ ++++ +GLFARG++ G
Sbjct: 1279 PQHPRAIFKGLRQSGASLSSLLGFGSSGSGSDLSDHGGGDNARPTTRRSSTSPAATGADTPKRRSKRITQVPEGEGGDEEGGVGDGRGFGIDTNRGRNVGDRVSETESARKARGDGFGGNEARAKPLAVLTLGEISFELSRKEPQPTLLAAVRELDEHPGPVTYGQAMGGWGKLSLSSTAVYLDGLPVPYLTADNVVVDGLFARGKLYG 1487
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BLAST of mRNA_H-elongata_contig10421.353.1 vs. uniprot
Match: A0A6H5L9Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y5_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 5.570e-23
Identity = 82/220 (37.27%), Postives = 114/220 (51.82%), Query Frame = 1 
Query:  238 GGKKGGTTGAGADSTPSIPRSLLRGIKRRGASLSSLFWINSN-----VSESGFSDNTR------------------------------GENEDKRGGDDSRNGDGPPVPNGK--GDSNNTSSGIMEGGTDG-DINFLVPSPLAVVEFGEILFEVSRKEPRQTLLTAVRQMDEHPGILTYGQAMGGWGKLSVSSSALYLDDLPVPFLSTESIIWEGLFARG 783
            GG+ G +  + +   P  PR +++G+++ GASLSSL    S+     +S+ G  DN R                              GE  D+ GG     G G     G+  GD  + +    E   DG   N     PLAV+  GEI FE        TLL AVR++DEHPG +TYGQ MGGWGKLS+SS+A+YLD LPVP+++ ++++ +GLFARG
Sbjct: 1576 GGEGGNSINSSSMPWPQHPRMMVKGLRQSGASLSSLLGFGSSGSGSDLSDHGGRDNARSTSRRSSASPAATGADTPKRRSKRITQVPAGEGGDEAGGFGDGRGFGIDKNRGRNVGDRISETESAREARGDGFGGNEARAKPLAVLTLGEISFE-------PTLLAAVRELDEHPGPVTYGQTMGGWGKLSLSSTAVYLDGLPVPYVTADNVVVDGLFARG 1788
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10421.353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2H6_ECTSI3.860e-3041.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L9Y5_9PHAE5.570e-2337.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10421contigH-elongata_contig10421:4158..5800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size795
Cds size795
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10421.353.1prot_H-elongata_contig10421.353.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10421 4158..5800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929576.1907814-CDS-H-elongata_contig10421:4157..43061622929576.1907814-CDS-H-elongata_contig10421:4157..4306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10421 4158..4306 -
1691679077.1382184-CDS-H-elongata_contig10421:4157..43061691679077.1382184-CDS-H-elongata_contig10421:4157..4306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10421 4158..4306 -
1622929576.2044868-CDS-H-elongata_contig10421:4978..50421622929576.2044868-CDS-H-elongata_contig10421:4978..5042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10421 4979..5042 -
1691679077.1456535-CDS-H-elongata_contig10421:4978..50421691679077.1456535-CDS-H-elongata_contig10421:4978..5042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10421 4979..5042 -
1622929576.2247953-CDS-H-elongata_contig10421:5218..58001622929576.2247953-CDS-H-elongata_contig10421:5218..5800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10421 5219..5800 -
1691679077.1533425-CDS-H-elongata_contig10421:5218..58001691679077.1533425-CDS-H-elongata_contig10421:5218..5800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10421 5219..5800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10421.353.1

>prot_H-elongata_contig10421.353.1 ID=prot_H-elongata_contig10421.353.1|Name=mRNA_H-elongata_contig10421.353.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
PADSCATTIALGNFHIRVEGDSLSSPPSVPCSTHPVTSPSSPIPRPHRHT
TPVMIRGTDGGNSIRNTPTSRARSIDSQSGGKKGGTTGAGADSTPSIPRS
LLRGIKRRGASLSSLFWINSNVSESGFSDNTRGENEDKRGGDDSRNGDGP
PVPNGKGDSNNTSSGIMEGGTDGDINFLVPSPLAVVEFGEILFEVSRKEP
RQTLLTAVRQMDEHPGILTYGQAMGGWGKLSVSSSALYLDDLPVPFLSTE
SIIWEGLFARGEMGG
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mRNA from alignment at H-elongata_contig10421:4158..5800-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10421.353.1 ID=mRNA_H-elongata_contig10421.353.1|Name=mRNA_H-elongata_contig10421.353.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1643bp|location=Sequence derived from alignment at H-elongata_contig10421:4158..5800- (Himanthalia elongata Himel1 dioecious)
CCGGCCGACTCCTGCGCCACGACGATCGCACTGGGGAACTTCCATATTCG
CGTGGAGGGCGATTCTCTCAGTTCCCCGCCATCGGTGCCCTGCTCGACGC
ACCCAGTTACTTCACCGTCGTCACCGATCCCTCGTCCGCATCGACACACG
ACACCGGTTATGATCAGAGGTACTGATGGCGGGAACAGTATCAGAAACAC
TCCGACATCGAGAGCGCGGAGCATCGACAGCCAAAGCGGAGGAAAAAAAG
GCGGTACCACCGGCGCTGGCGCCGACAGCACTCCTTCCATACCTCGGTCG
TTATTGCGGGGGATCAAAAGGCGCGGTGCCAGCCTCTCTTCCCTTTTCTG
GATCAACAGCAATGTCAGTGAAAGCGGCTTCAGTGACAACACTCGAGGGG
AAAACGAGGATAAGCGTGGCGGTGACGACTCGCGTAATGGAGATGGCCCG
CCTGTTCCGAACGGCAAGGGTGACTCTAATAATACCAGTTCTGGAATCAT
GGAGGGGGGGACCGACGGTGACATCAACTTTTTAGTTCCTTCTCCGTTGG
CCGTGGTTGAGTTCGGCGAGATTTTGTTCGAGGTCAGTGGCTACATGGCC
GGGTTTACAACAGACCTTCCCGAATTCTGCACCGACTAACGTCCTATAGG
GAAGTTTCTCCCCTCAGCTTGTCAATAGTAAACGGCAATCGTACGTTTGC
CTCCTGTTCATAATGATCATGTTGTATTTCGCCCTCTTTACATATTCTCT
AATCGTAGGTGTCTCGCAAGGAACCTCGACAGACACTGCTTACCGCCGTT
AGACAAATGGATGAACATCCAGGTCAGGACATCAAGAAAGCTTGTCGAAT
CACGAGAGTCGAGTCGAACTTCCATTCTCTTCACTGAACACAAAATACGT
CGTTGATGTGATGGAATCTGATTCAACGATAGTCGGTGGGTGGGTGGGGG
GGGGTATCAAAAGAGCCCCTCCAGGGCAAATAGTAGAAAATCCCCATGGA
GTGGAGTTTGTTCGGAGTATAATAGCGTATTATGTAAGATTATGGATACT
CGTATCCCCAGGAGGGGCGAATTGATTCCGTCCCCTCGTGAACTCTGGGA
TATACTCATCGAATTCCCCCGCACATCTATCGTTGAATAACTCAATCACA
TATCTGATGGAAAGTAAAAAAGTTAAACCGACGCTTGAACGGATACTTAC
CAAGTACGCACGTCACGTTGTGCTTTGATCGAGAGTTGGCAAGCCAAGCC
ACTCAGACACCTCTTTAGACAACTGAAATCCGTACAATGGGACAGTAGTC
CTGTCGCGCTGATAACATAAAAATATCGTAAACCATGACGCGGCCTTGAA
GAATATCGACGCCCGTTCCCCATCGAGGAATCACACGTCATAAATCAACG
TGGGTCTCATGAGCGTACGTACGCCCCTCAGTCGCTTGTGATGGTAGAGC
GCTACGTACGTGTGATGAAATAGTTGTCTTCCTTTTCTGAACAGGTATAC
TGACGTACGGACAGGCAATGGGAGGCTGGGGAAAGTTGTCCGTCTCCTCC
TCTGCCCTCTACTTGGATGATCTACCTGTACCCTTCCTGTCCACGGAAAG
CATAATATGGGAGGGTTTATTCGCCAGGGGTGAGATGGGAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig10421:4158..5800-

>mRNA_H-elongata_contig10421.353.1 ID=mRNA_H-elongata_contig10421.353.1|Name=mRNA_H-elongata_contig10421.353.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig10421:4158..5800- (Himanthalia elongata Himel1 dioecious)
CCGGCCGACTCCTGCGCCACGACGATCGCACTGGGGAACTTCCATATTCG
CGTGGAGGGCGATTCTCTCAGTTCCCCGCCATCGGTGCCCTGCTCGACGC
ACCCAGTTACTTCACCGTCGTCACCGATCCCTCGTCCGCATCGACACACG
ACACCGGTTATGATCAGAGGTACTGATGGCGGGAACAGTATCAGAAACAC
TCCGACATCGAGAGCGCGGAGCATCGACAGCCAAAGCGGAGGAAAAAAAG
GCGGTACCACCGGCGCTGGCGCCGACAGCACTCCTTCCATACCTCGGTCG
TTATTGCGGGGGATCAAAAGGCGCGGTGCCAGCCTCTCTTCCCTTTTCTG
GATCAACAGCAATGTCAGTGAAAGCGGCTTCAGTGACAACACTCGAGGGG
AAAACGAGGATAAGCGTGGCGGTGACGACTCGCGTAATGGAGATGGCCCG
CCTGTTCCGAACGGCAAGGGTGACTCTAATAATACCAGTTCTGGAATCAT
GGAGGGGGGGACCGACGGTGACATCAACTTTTTAGTTCCTTCTCCGTTGG
CCGTGGTTGAGTTCGGCGAGATTTTGTTCGAGCCGGCCGACTCCTGCGCC
ACGACGATCGCACTGGGGAACTTCCATATTCGCGTGGAGGGCGATTCTCT
CAGTTCCCCGCCATCGGTGCCCTGCTCGACGCACCCAGTTACTTCACCGT
CGTCACCGATCCCTCGTCCGCATCGACACACGACACCGGTTATGATCAGA
GGTACTGATGGCGGGAACAGTATCAGAAACACTCCGACATCGAGAGCGCG
GAGCATCGACAGCCAAAGCGGAGGAAAAAAAGGCGGTACCACCGGCGCTG
GCGCCGACAGCACTCCTTCCATACCTCGGTCGTTATTGCGGGGGATCAAA
AGGCGCGGTGCCAGCCTCTCTTCCCTTTTCTGGATCAACAGCAATGTCAG
TGAAAGCGGCTTCAGTGACAACACTCGAGGGGAAAACGAGGATAAGCGTG
GCGGTGACGACTCGCGTAATGGAGATGGCCCGCCTGTTCCGAACGGCAAG
GGTGACTCTAATAATACCAGTTCTGGAATCATGGAGGGGGGGACCGACGG
TGACATCAACTTTTTAGTTCCTTCTCCGTTGGCCGTGGTTGAGTTCGGCG
AGATTTTGTTCGAGGTGTCTCGCAAGGAACCTCGACAGACACTGCTTACC
GCCGTTAGACAAATGGATGAACATCCAGGTGTCTCGCAAGGAACCTCGAC
AGACACTGCTTACCGCCGTTAGACAAATGGATGAACATCCAGGTATACTG
ACGTACGGACAGGCAATGGGAGGCTGGGGAAAGTTGTCCGTCTCCTCCTC
TGCCCTCTACTTGGATGATCTACCTGTACCCTTCCTGTCCACGGAAAGCA
TAATATGGGAGGGTTTATTCGCCAGGGGTGAGATGGGAGGCGTATACTGA
CGTACGGACAGGCAATGGGAGGCTGGGGAAAGTTGTCCGTCTCCTCCTCT
GCCCTCTACTTGGATGATCTACCTGTACCCTTCCTGTCCACGGAAAGCAT
AATATGGGAGGGTTTATTCGCCAGGGGTGAGATGGGAGGC
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