mRNA_H-elongata_contig104200.352.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 199 bits (506), Expect = 3.150e-52 Identity = 147/457 (32.17%), Postives = 223/457 (48.80%), Query Frame = 1
Query: 58 PKDKLVAGTKNLYMRKVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*------VLR*SWAGA*EGSDEDRADYI-----------RWTGLWTLHGGIHG---LGFRSLLGYETIGVRCGVD----------SVEG-----GDQLVLKDARSDSIGYLRGRVGCFI---RGVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
P+ + +K + K ++GK++ +K RLVA+GF Q+ V Y + P P++ SI + LA K L H+D +QA+ A DEE+++++P + + + IYGL Q+GR W + + GFE+ KADPCVFRK+VD +++V++VDDIL D+ ++ A+ L +KF K++G+ ++ GC I ++ +A L+I Q Y++SMVE FDVK I AT G + G + W D A W + + G + G LG G +G+ VD SV G G +V +++ SI L +I GVKE LF+R V F+ ++K V EDN+G I L N +S R KHIDV++H +R + + V V + QHADLLTK L
Sbjct: 776 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG-SGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIK-VLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1229
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 199 bits (506), Expect = 3.470e-52 Identity = 147/457 (32.17%), Postives = 223/457 (48.80%), Query Frame = 1
Query: 58 PKDKLVAGTKNLYMRKVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*------VLR*SWAGA*EGSDEDRADYI-----------RWTGLWTLHGGIHG---LGFRSLLGYETIGVRCGVD----------SVEG-----GDQLVLKDARSDSIGYLRGRVGCFI---RGVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
P+ + +K + K ++GK++ +K RLVA+GF Q+ V Y + P P++ SI + LA K L H+D +QA+ A DEE+++++P + + + IYGL Q+GR W + + GFE+ KADPCVFRK+VD +++V++VDDIL D+ ++ A+ L +KF K++G+ ++ GC I ++ +A L+I Q Y++SMVE FDVK I AT G + G + W D A W + + G + G LG G +G+ VD SV G G +V +++ SI L +I GVKE LF+R V F+ ++K V EDN+G I L N +S R KHIDV++H +R + + V V + QHADLLTK L
Sbjct: 1155 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG-SGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIK-VLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1608
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 199 bits (506), Expect = 3.510e-52 Identity = 147/457 (32.17%), Postives = 223/457 (48.80%), Query Frame = 1
Query: 58 PKDKLVAGTKNLYMRKVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*------VLR*SWAGA*EGSDEDRADYI-----------RWTGLWTLHGGIHG---LGFRSLLGYETIGVRCGVD----------SVEG-----GDQLVLKDARSDSIGYLRGRVGCFI---RGVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
P+ + +K + K ++GK++ +K RLVA+GF Q+ V Y + P P++ SI + LA K L H+D +QA+ A DEE+++++P + + + IYGL Q+GR W + + GFE+ KADPCVFRK+VD +++V++VDDIL D+ ++ A+ L +KF K++G+ ++ GC I ++ +A L+I Q Y++SMVE FDVK I AT G + G + W D A W + + G + G LG G +G+ VD SV G G +V +++ SI L +I GVKE LF+R V F+ ++K V EDN+G I L N +S R KHIDV++H +R + + V V + QHADLLTK L
Sbjct: 1175 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG-SGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIK-VLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 199 bits (506), Expect = 3.560e-52 Identity = 147/457 (32.17%), Postives = 223/457 (48.80%), Query Frame = 1
Query: 58 PKDKLVAGTKNLYMRKVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*------VLR*SWAGA*EGSDEDRADYI-----------RWTGLWTLHGGIHG---LGFRSLLGYETIGVRCGVD----------SVEG-----GDQLVLKDARSDSIGYLRGRVGCFI---RGVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
P+ + +K + K ++GK++ +K RLVA+GF Q+ V Y + P P++ SI + LA K L H+D +QA+ A DEE+++++P + + + IYGL Q+GR W + + GFE+ KADPCVFRK+VD +++V++VDDIL D+ ++ A+ L +KF K++G+ ++ GC I ++ +A L+I Q Y++SMVE FDVK I AT G + G + W D A W + + G + G LG G +G+ VD SV G G +V +++ SI L +I GVKE LF+R V F+ ++K V EDN+G I L N +S R KHIDV++H +R + + V V + QHADLLTK L
Sbjct: 1318 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG-SGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIK-VLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1771
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE) HSP 1 Score: 185 bits (469), Expect = 2.090e-48 Identity = 140/445 (31.46%), Postives = 221/445 (49.66%), Query Frame = 1
Query: 103 KVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*VLR*SWAGA*EG-SDEDRADYIRWTGLWTLHGG----IHGLGFRSLLGY--ET--IGVRCGVDSVEGGDQLVLKDA---------RSDSIGYLRGRVGCFIR-----------------------GVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
+V GK+ K K RLVA+GF Q GV Y + + PT SI + +A D HFD EQAF+++ D E+++++P + G V RL+K++YGL QA R ++ D+ IGFE+ +DPCV ++ E ++ +HVDDIL +++ + A L K++G+ R+ +GC ++R+A +++ Q Y+ S++E F+V + +I A+ S G V G+ +++ R D H H + +L Y ET + ++ D++ LV DA RSDS G L C + GVKE LF++ + +F+ S R+G ++ V EDNEG I LA N +S KHIDV+HH+ R+ ++ + + HV+SE QHAD+LTK L
Sbjct: 203 RVSSKGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMTGKVVRLDKSLYGLRQASRTFHKRLVSDLKRIGFEQSLSDPCVLHFMMGDEVLGMIAIHVDDILYAGIERLAEMVVEA-LGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRTSSIPASLTNDYRSVIEDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQDTMVDVGTLVYVDADFASEATDRRSDS-GALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQ-VREDNEGAIALAENPLSSCNSKHIDVRHHLFRNLTEEGVLEIRHVSSEGQHADILTKAL 644
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE) HSP 1 Score: 183 bits (464), Expect = 4.680e-48 Identity = 126/406 (31.03%), Postives = 199/406 (49.01%), Query Frame = 1
Query: 103 KVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*VLR*SWAGA*EG--SDEDRADYIRWTGLWTLHGGIHGLGFRSLLGYETIGVRCGVDSVEGGDQLVLKDARSDSIGYLRGRVGCFIRGVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
K +GK+ K+K RLVA+GF ++ V Y + P P++ SI + LA K L H+D +QA+ A DEE+++ +P +G+ + IYGL Q+GR W + + GFE+ KADPCVFRK+VD +++V++VDD+L D+ ++ A+ L++KF K++G+ + C I ++ +A LKI Q Y+++MV+ FDV+ I A+ GV + + G W G +++ R L GI RS++ + C + G+ GVKE LF+R V F+ +++ V ED +G I L N + R KHIDV+ H +R + + V V + QH DL+TK L
Sbjct: 216 KTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDEDCEELLAS-LKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRFDVQSTSRIPASPGVDLGPKRDDEKGG-----EWPVXALGCHTEDPRLPERDEGPRHHLPTGIGVRACRSIVSLSSTEAEC----IAAGE------------------------GVKEALFVRAVLSFVAPETSGSSIQ-VLEDKQGAIALVQNPLSPGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHTDLVTKAL 586
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 177 bits (450), Expect = 2.410e-47 Identity = 133/420 (31.67%), Postives = 204/420 (48.57%), Query Frame = 1
Query: 190 KNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRC---------G*VLR*SWAGA*EGSDEDRADYIRWTGLWTLHGG-IHGLGFRSLLGY----ETIGVRCGVDSVEGGDQLVLKDA---------RSDSIGYLRGRVGC---FIRG-------------------VKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
+ Y PT A S+ + A ++ LRHFD +QAF+++ DE++++ +PE + G + +LNK++YGL QA R W+++ + +GF + AD CVFR + +G V +VVHVDDI + +++ D F +L +K++GD R+ GC ++ A LKI Q Y E + F V+ G+ I G+ + ++ G ++ W + D A+ +R + IH +LGY +G+ SV G V DA RS S G + GC F R +KEVLFLRQV +FM + + VFEDN+G I+LA N ++ KHIDV+HH +R+ +++ + HV S YQHAD LTK L
Sbjct: 10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEE-RCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLM---WLAT--QTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIP-VFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 422
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 184 bits (466), Expect = 2.640e-47 Identity = 137/442 (31.00%), Postives = 211/442 (47.74%), Query Frame = 1
Query: 103 KVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*------VLR*SWAGA*EGSDEDRADYI-----------RWTGLWTLHGGIHG---LGFRSLLGYETIGVRCGVDS---------------VEGGDQLVLKDARSDSIGYLRGRVGCFI---RGVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
K ++GK++ K R VA+GF Q+ + + P P++ SI + LA K L H+D +QA+ A DEE+++++P + + + IYGL Q+GR W + + GFE+ KADPCVFRK+VD +++V++VDDIL D+ ++ A+ L +KF K++G+ ++ GC I ++ A L+I Q Y++SMVE FDVK I AT G + + G V W D A W + + G + G LG G +G+ VD+ G +V +++ SI L +I GVKE LF+R V F+ R +++ V EDN+G I L N +S +KHIDV+ H +R + V V + QHAD+LT+ L
Sbjct: 382 KTNKEGKIDTLKARRVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG-SGLGLAVYVDARYADTEDRRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQ-VLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQAL 820
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE) HSP 1 Score: 181 bits (458), Expect = 4.030e-47 Identity = 147/455 (32.31%), Postives = 222/455 (48.79%), Query Frame = 1
Query: 82 TKNLYMRKVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNI-LATS--------GVPILSSERSTRCG*VLR*SWAGA*EGSDEDRADYIRWTGLWTLHGGIHGLGFRSLLGY----ETIGVRCGVDSVEGGDQLVL---------KDARSDSIGYLR---GRVGCFIRGVK-------------------EVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
+K L+ KV G K K RLVA+G Q E + + Y PT A+ S+ M A D L HFD +QAF++A +E +++ +PE G + +LNK++YGL QA R W + ++GFE+ AD C+FR V GE +++VVHVDDI A K D F +L + +K +G+ ++ GC+ +R+A + I Q Y E + E + V+ G I L T+ P + G +L + + ++ RA R++G L IH S LGY + G+ +V G + D RS+S G + G + F + K E+LFLRQV +FM L + ++EDNEG I++A + ++ KHIDV+HH +R D ++V ++HV S+YQHAD LTK L
Sbjct: 153 SKLLFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFA-VGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYEGDREAGRMTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEHPFRALVGSLLWIALLTRPDIANSVRA-VARYSGAPKL---IHWKAALSFLGYAVRTSSFGISFQRGTVSGFSLITFVYADYASRAADRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFM-LPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTKAL 601
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 181 bits (459), Expect = 9.120e-47 Identity = 131/444 (29.50%), Postives = 205/444 (46.17%), Query Frame = 1
Query: 103 KVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*VLR*SWAGA*----EGSDEDRADYIR-------------WTGLWTLHGGIHGLGFRSLLGYETIGVRCGVDSVEGGDQLVLKDARSDSIGYLRGRVGCFIR-----------------------GVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
K + GK+ K K RLVA+GF Q GV Y + + PT SI + +A + L H D EQAF ++ D E+ +++P G + RLNK++YGL QA R + D+ IGFE+ +DPCV R ++ E ++ +HVDDIL +A K ++ L K++G+ R+ +GC +++R+A ++I Q Y+ S++E F++ + +I A+ S G V G + + ++ +R W + + +L + V G D R G L GC + GVKE LF+ + + + S + + +VFEDNEG I LA N +S R KHIDV+HH +R+ ++ + V HV S+ QHAD+LTK L
Sbjct: 267 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDIL-YAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKI-DVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 708 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig104200.352.1 >prot_H-elongata_contig104200.352.1 ID=prot_H-elongata_contig104200.352.1|Name=mRNA_H-elongata_contig104200.352.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp MRDMIENYVYKQMARPKDKLVAGTKNLYMRKVGQDGKVEKYKCRLVAQGFback to top mRNA from alignment at H-elongata_contig104200:851..2191+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig104200.352.1 ID=mRNA_H-elongata_contig104200.352.1|Name=mRNA_H-elongata_contig104200.352.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1341bp|location=Sequence derived from alignment at H-elongata_contig104200:851..2191+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig104200:851..2191+ >mRNA_H-elongata_contig104200.352.1 ID=mRNA_H-elongata_contig104200.352.1|Name=mRNA_H-elongata_contig104200.352.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig104200:851..2191+ (Himanthalia elongata Himel1 dioecious)back to top |