mRNA_H-elongata_contig104200.352.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig104200.352.1
Unique NamemRNA_H-elongata_contig104200.352.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 3.150e-52
Identity = 147/457 (32.17%), Postives = 223/457 (48.80%), Query Frame = 1
Query:   58 PKDKLVAGTKNLYMRKVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*------VLR*SWAGA*EGSDEDRADYI-----------RWTGLWTLHGGIHG---LGFRSLLGYETIGVRCGVD----------SVEG-----GDQLVLKDARSDSIGYLRGRVGCFI---RGVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
            P+ +    +K  +  K  ++GK++ +K RLVA+GF Q+  V Y  +  P P++ SI + LA    K   L H+D +QA+  A  DEE+++++P         + +  + IYGL Q+GR W  +    +   GFE+ KADPCVFRK+VD    +++V++VDDIL    D+   ++ A+ L +KF  K++G+ ++  GC I ++ +A  L+I Q  Y++SMVE FDVK    I AT G  +         G       +    W       D   A               W  +  + G + G   LG     G   +G+   VD          SV G     G  +V   +++ SI  L      +I    GVKE LF+R V  F+       ++K V EDN+G I L  N  +S R KHIDV++H +R    +  + V  V +  QHADLLTK L
Sbjct:  776 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG-SGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIK-VLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1229          
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 3.470e-52
Identity = 147/457 (32.17%), Postives = 223/457 (48.80%), Query Frame = 1
Query:   58 PKDKLVAGTKNLYMRKVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*------VLR*SWAGA*EGSDEDRADYI-----------RWTGLWTLHGGIHG---LGFRSLLGYETIGVRCGVD----------SVEG-----GDQLVLKDARSDSIGYLRGRVGCFI---RGVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
            P+ +    +K  +  K  ++GK++ +K RLVA+GF Q+  V Y  +  P P++ SI + LA    K   L H+D +QA+  A  DEE+++++P         + +  + IYGL Q+GR W  +    +   GFE+ KADPCVFRK+VD    +++V++VDDIL    D+   ++ A+ L +KF  K++G+ ++  GC I ++ +A  L+I Q  Y++SMVE FDVK    I AT G  +         G       +    W       D   A               W  +  + G + G   LG     G   +G+   VD          SV G     G  +V   +++ SI  L      +I    GVKE LF+R V  F+       ++K V EDN+G I L  N  +S R KHIDV++H +R    +  + V  V +  QHADLLTK L
Sbjct: 1155 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG-SGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIK-VLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1608          
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 3.510e-52
Identity = 147/457 (32.17%), Postives = 223/457 (48.80%), Query Frame = 1
Query:   58 PKDKLVAGTKNLYMRKVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*------VLR*SWAGA*EGSDEDRADYI-----------RWTGLWTLHGGIHG---LGFRSLLGYETIGVRCGVD----------SVEG-----GDQLVLKDARSDSIGYLRGRVGCFI---RGVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
            P+ +    +K  +  K  ++GK++ +K RLVA+GF Q+  V Y  +  P P++ SI + LA    K   L H+D +QA+  A  DEE+++++P         + +  + IYGL Q+GR W  +    +   GFE+ KADPCVFRK+VD    +++V++VDDIL    D+   ++ A+ L +KF  K++G+ ++  GC I ++ +A  L+I Q  Y++SMVE FDVK    I AT G  +         G       +    W       D   A               W  +  + G + G   LG     G   +G+   VD          SV G     G  +V   +++ SI  L      +I    GVKE LF+R V  F+       ++K V EDN+G I L  N  +S R KHIDV++H +R    +  + V  V +  QHADLLTK L
Sbjct: 1175 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG-SGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIK-VLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628          
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 3.560e-52
Identity = 147/457 (32.17%), Postives = 223/457 (48.80%), Query Frame = 1
Query:   58 PKDKLVAGTKNLYMRKVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*------VLR*SWAGA*EGSDEDRADYI-----------RWTGLWTLHGGIHG---LGFRSLLGYETIGVRCGVD----------SVEG-----GDQLVLKDARSDSIGYLRGRVGCFI---RGVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
            P+ +    +K  +  K  ++GK++ +K RLVA+GF Q+  V Y  +  P P++ SI + LA    K   L H+D +QA+  A  DEE+++++P         + +  + IYGL Q+GR W  +    +   GFE+ KADPCVFRK+VD    +++V++VDDIL    D+   ++ A+ L +KF  K++G+ ++  GC I ++ +A  L+I Q  Y++SMVE FDVK    I AT G  +         G       +    W       D   A               W  +  + G + G   LG     G   +G+   VD          SV G     G  +V   +++ SI  L      +I    GVKE LF+R V  F+       ++K V EDN+G I L  N  +S R KHIDV++H +R    +  + V  V +  QHADLLTK L
Sbjct: 1318 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG-SGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIK-VLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1771          
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 2.090e-48
Identity = 140/445 (31.46%), Postives = 221/445 (49.66%), Query Frame = 1
Query:  103 KVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*VLR*SWAGA*EG-SDEDRADYIRWTGLWTLHGG----IHGLGFRSLLGY--ET--IGVRCGVDSVEGGDQLVLKDA---------RSDSIGYLRGRVGCFIR-----------------------GVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
            +V   GK+ K K RLVA+GF Q  GV Y + + PT    SI + +A     D    HFD EQAF+++  D E+++++P   +   G V RL+K++YGL QA R ++     D+  IGFE+  +DPCV   ++  E   ++ +HVDDIL    +++   +  A L      K++G+ R+ +GC   ++R+A  +++ Q  Y+ S++E F+V +  +I A+      S       G V      G+    +++ R D          H       H    + +L Y  ET  + ++   D++     LV  DA         RSDS G L     C +                        GVKE LF++ + +F+  S R+G ++ V EDNEG I LA N  +S   KHIDV+HH+ R+ ++   + + HV+SE QHAD+LTK L
Sbjct:  203 RVSSKGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMTGKVVRLDKSLYGLRQASRTFHKRLVSDLKRIGFEQSLSDPCVLHFMMGDEVLGMIAIHVDDILYAGIERLAEMVVEA-LGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRTSSIPASLTNDYRSVIEDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQDTMVDVGTLVYVDADFASEATDRRSDS-GALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQ-VREDNEGAIALAENPLSSCNSKHIDVRHHLFRNLTEEGVLEIRHVSSEGQHADILTKAL 644          
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 4.680e-48
Identity = 126/406 (31.03%), Postives = 199/406 (49.01%), Query Frame = 1
Query:  103 KVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*VLR*SWAGA*EG--SDEDRADYIRWTGLWTLHGGIHGLGFRSLLGYETIGVRCGVDSVEGGDQLVLKDARSDSIGYLRGRVGCFIRGVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
            K   +GK+ K+K RLVA+GF ++  V Y  +  P P++ SI + LA    K   L H+D +QA+  A  DEE+++ +P         +G+  + IYGL Q+GR W  +    +   GFE+ KADPCVFRK+VD    +++V++VDD+L    D+   ++ A+ L++KF  K++G+  +   C I ++ +A  LKI Q  Y+++MV+ FDV+    I A+ GV +       + G      W     G  +++ R           L  GI     RS++   +    C    +  G+                        GVKE LF+R V  F+       +++ V ED +G I L  N  +  R KHIDV+ H +R    +  + V  V +  QH DL+TK L
Sbjct:  216 KTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDEDCEELLAS-LKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRFDVQSTSRIPASPGVDLGPKRDDEKGG-----EWPVXALGCHTEDPRLPERDEGPRHHLPTGIGVRACRSIVSLSSTEAEC----IAAGE------------------------GVKEALFVRAVLSFVAPETSGSSIQ-VLEDKQGAIALVQNPLSPGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHTDLVTKAL 586          
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 2.410e-47
Identity = 133/420 (31.67%), Postives = 204/420 (48.57%), Query Frame = 1
Query:  190 KNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRC---------G*VLR*SWAGA*EGSDEDRADYIRWTGLWTLHGG-IHGLGFRSLLGY----ETIGVRCGVDSVEGGDQLVLKDA---------RSDSIGYLRGRVGC---FIRG-------------------VKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
            + Y PT A  S+ +  A    ++  LRHFD +QAF+++  DE++++ +PE   +  G + +LNK++YGL QA R W+++    +  +GF +  AD CVFR + +G   V +VVHVDDI +  +++   D F  +L     +K++GD R+  GC   ++  A  LKI Q  Y E +   F V+ G+ I    G+ +   ++             G ++   W      +  D A+ +R    +      IH      +LGY      +G+     SV G    V  DA         RS S G +    GC   F R                    +KEVLFLRQV +FM     +  +  VFEDN+G I+LA N  ++   KHIDV+HH +R+    +++ + HV S YQHAD LTK L
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEE-RCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLM---WLAT--QTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIP-VFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 422          
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 2.640e-47
Identity = 137/442 (31.00%), Postives = 211/442 (47.74%), Query Frame = 1
Query:  103 KVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*------VLR*SWAGA*EGSDEDRADYI-----------RWTGLWTLHGGIHG---LGFRSLLGYETIGVRCGVDS---------------VEGGDQLVLKDARSDSIGYLRGRVGCFI---RGVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
            K  ++GK++  K R VA+GF Q+  +    +  P P++ SI + LA    K   L H+D +QA+  A  DEE+++++P         + +  + IYGL Q+GR W  +    +   GFE+ KADPCVFRK+VD    +++V++VDDIL    D+   ++ A+ L +KF  K++G+ ++  GC I ++  A  L+I Q  Y++SMVE FDVK    I AT G  +       + G       V    W       D   A               W  +  + G + G   LG     G   +G+   VD+                  G  +V   +++ SI  L      +I    GVKE LF+R V  F+    R  +++ V EDN+G I L  N  +S  +KHIDV+ H +R    +    V  V +  QHAD+LT+ L
Sbjct:  382 KTNKEGKIDTLKARRVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG-SGLGLAVYVDARYADTEDRRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQ-VLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQAL 820          
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 4.030e-47
Identity = 147/455 (32.31%), Postives = 222/455 (48.79%), Query Frame = 1
Query:   82 TKNLYMRKVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNI-LATS--------GVPILSSERSTRCG*VLR*SWAGA*EGSDEDRADYIRWTGLWTLHGGIHGLGFRSLLGY----ETIGVRCGVDSVEGGDQLVL---------KDARSDSIGYLR---GRVGCFIRGVK-------------------EVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
            +K L+  KV   G   K K RLVA+G  Q E + +   Y PT A+ S+ M  A     D  L HFD +QAF++A  +E +++ +PE      G + +LNK++YGL QA R W       + ++GFE+  AD C+FR V  GE  +++VVHVDDI A    K   D F  +L +   +K +G+ ++  GC+   +R+A  + I Q  Y E + E + V+ G  I L T+          P +        G +L  +     + ++  RA   R++G   L   IH     S LGY     + G+     +V G   +            D RS+S G +    G +  F +  K                   E+LFLRQV +FM L   +     ++EDNEG I++A +  ++   KHIDV+HH +R   D ++V ++HV S+YQHAD LTK L
Sbjct:  153 SKLLFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFA-VGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYEGDREAGRMTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEHPFRALVGSLLWIALLTRPDIANSVRA-VARYSGAPKL---IHWKAALSFLGYAVRTSSFGISFQRGTVSGFSLITFVYADYASRAADRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFM-LPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTKAL 601          
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 9.120e-47
Identity = 131/444 (29.50%), Postives = 205/444 (46.17%), Query Frame = 1
Query:  103 KVGQDGKVEKYKCRLVAQGFWQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTDEELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEKGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKLKDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATSGVPILSSERSTRCG*VLR*SWAGA*----EGSDEDRADYIR-------------WTGLWTLHGGIHGLGFRSLLGYETIGVRCGVDSVEGGDQLVLKDARSDSIGYLRGRVGCFIR-----------------------GVKEVLFLRQVQKFMELSMRVGAVKNVFEDNEGGIKLATNKHTSRRIKHIDVKHHMVRDASDAQKVRVMHVTSEYQHADLLTKPL 1314
            K  + GK+ K K RLVA+GF Q  GV Y + + PT    SI + +A     +  L H D EQAF ++  D E+ +++P       G + RLNK++YGL QA R +      D+  IGFE+  +DPCV R ++  E   ++ +HVDDIL +A  K   ++    L      K++G+ R+ +GC  +++R+A  ++I Q  Y+ S++E F++ +  +I A+      S       G V      G        +  + ++ +R             W     +   +      +L   +   V  G       D       R    G L    GC +                        GVKE LF+  + + +  S +   + +VFEDNEG I LA N  +S R KHIDV+HH +R+ ++   + V HV S+ QHAD+LTK L
Sbjct:  267 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDIL-YAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKI-DVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 708          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig104200.352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG8_9PHAE3.150e-5232.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE3.470e-5232.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE3.510e-5232.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE3.560e-5232.17Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5KN43_9PHAE2.090e-4831.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLS1_9PHAE4.680e-4831.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE2.410e-4731.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQN6_9PHAE2.640e-4731.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K307_9PHAE4.030e-4732.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE9.120e-4729.50Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig104200contigH-elongata_contig104200:851..2191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score149.8
Seed ortholog evalue1.8e-33
Seed eggNOG ortholog5111.M1VW57
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSordariomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1314
Cds size795
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig104200.352.1prot_H-elongata_contig104200.352.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig104200 863..1657 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929576.0831304-UTR-H-elongata_contig104200:850..8621622929576.0831304-UTR-H-elongata_contig104200:850..862Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104200 851..862 +
1691679077.10125-UTR-H-elongata_contig104200:850..8621691679077.10125-UTR-H-elongata_contig104200:850..862Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104200 851..862 +
1622929576.1164446-UTR-H-elongata_contig104200:1657..17111622929576.1164446-UTR-H-elongata_contig104200:1657..1711Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104200 1658..1711 +
1691679077.1172066-UTR-H-elongata_contig104200:1657..17111691679077.1172066-UTR-H-elongata_contig104200:1657..1711Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104200 1658..1711 +
1622929576.129892-UTR-H-elongata_contig104200:1738..21911622929576.129892-UTR-H-elongata_contig104200:1738..2191Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104200 1739..2191 +
1691679077.1306372-UTR-H-elongata_contig104200:1738..21911691679077.1306372-UTR-H-elongata_contig104200:1738..2191Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig104200 1739..2191 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929576.1013813-CDS-H-elongata_contig104200:862..16571622929576.1013813-CDS-H-elongata_contig104200:862..1657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104200 863..1657 +
1691679077.109842-CDS-H-elongata_contig104200:862..16571691679077.109842-CDS-H-elongata_contig104200:862..1657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104200 863..1657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig104200.352.1

>prot_H-elongata_contig104200.352.1 ID=prot_H-elongata_contig104200.352.1|Name=mRNA_H-elongata_contig104200.352.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
MRDMIENYVYKQMARPKDKLVAGTKNLYMRKVGQDGKVEKYKCRLVAQGF
WQVEGVYYTKNYLPTPATVSIGMFLATTAAKDGGLRHFDAEQAFLKAGTD
EELYIEIPEEYQKFPGAVGRLNKTIYGLVQAGRCWNNNFYGDMASIGFEK
GKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTMDIFAAELRQKFKL
KDMGDARYNMGCHITKNRKARELKIDQHLYVESMVETFDVKKGRNILATS
GVPILSSERSTRCG*
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mRNA from alignment at H-elongata_contig104200:851..2191+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig104200.352.1 ID=mRNA_H-elongata_contig104200.352.1|Name=mRNA_H-elongata_contig104200.352.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1341bp|location=Sequence derived from alignment at H-elongata_contig104200:851..2191+ (Himanthalia elongata Himel1 dioecious)
CTGAGGAAACAGATGCGTGACATGATCGAGAATTACGTTTATAAGCAGAT GGCTCGGCCGAAGGATAAGCTCGTGGCTGGCACAAAAAATCTCTACATGC GAAAGGTCGGACAGGACGGAAAGGTCGAGAAGTACAAGTGCCGACTTGTC GCTCAAGGCTTCTGGCAGGTGGAAGGTGTGTACTACACGAAAAATTACTT GCCCACGCCTGCGACCGTATCAATCGGAATGTTTTTGGCGACGACAGCGG CCAAGGACGGAGGGCTGCGCCATTTCGACGCGGAGCAGGCATTTTTGAAA GCGGGCACCGATGAGGAGTTGTATATAGAGATCCCCGAGGAGTACCAGAA GTTTCCGGGGGCAGTGGGACGGCTGAACAAGACCATTTACGGGCTCGTAC AGGCGGGGAGGTGCTGGAACAACAACTTCTACGGCGATATGGCGTCGATT GGATTCGAGAAGGGAAAGGCGGATCCGTGCGTGTTCCGTAAGGTCGTTGA TGGCGAGGCAGAAGTGGTGGTGGTTGTACACGTGGACGATATTCTTGCTC ACGCCAAAGACAAAGTGACGATGGATATATTCGCGGCTGAGCTTAGACAA AAGTTTAAATTAAAAGACATGGGTGACGCCAGGTACAACATGGGCTGTCA CATTACTAAGAACCGCAAGGCGCGCGAGCTGAAGATCGACCAACACTTGT ACGTGGAGTCGATGGTGGAAACGTTCGACGTCAAAAAGGGAAGAAATATA TTGGCTACGTCGGGGGTGCCAATACTCTCAAGCGAGCGCAGTACGCGCTG TGGCTAGGTTCTGCGATAATCCTGGGCCGGCGCATAAGAAGGCAGTGATG AAGATCGTGCAGTATCTCCTTCACACGAAGGATTGAAGGATTACATACGG TGGACAGGGCTGTGGACTCTGCATGGAGGCATACACGGACTCGGATTTCG GAGCCTGCTTGGATACGAGACGATCGGTGTCAGGTGCGGTGTTGATTCTG TCGAAGGGGGCGATCAGCTGGTACTCAAGGATGCAAGAAGTGACAGCATC GGGTACCTCAGAGGCAGAGTAGGTTGCTTTATCAGAGGCGTAAAGGAGGT TCTATTTTTAAGGCAGGTCCAGAAGTTCATGGAACTGTCGATGAGGGTTG GTGCAGTAAAGAATGTATTCGAGGATAATGAGGGGGGCATCAAACTGGCC ACCAACAAGCATACTAGTCGTAGGATTAAGCACATTGATGTGAAACATCA TATGGTGAGGGACGCGTCTGACGCGCAAAAGGTTAGAGTAATGCATGTGA CATCAGAATATCAGCACGCGGACTTGCTGACGAAACCACTT
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Coding sequence (CDS) from alignment at H-elongata_contig104200:851..2191+

>mRNA_H-elongata_contig104200.352.1 ID=mRNA_H-elongata_contig104200.352.1|Name=mRNA_H-elongata_contig104200.352.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig104200:851..2191+ (Himanthalia elongata Himel1 dioecious)
ATGCGTGACATGATCGAGAATTACGTTTATAAGCAGATGGCTCGGCCGAA
GGATAAGCTCGTGGCTGGCACAAAAAATCTCTACATGCGAAAGGTCGGAC
AGGACGGAAAGGTCGAGAAGTACAAGTGCCGACTTGTCGCTCAAGGCTTC
TGGCAGGTGGAAGGTGTGTACTACACGAAAAATTACTTGCCCACGCCTGC
GACCGTATCAATCGGAATGTTTTTGGCGACGACAGCGGCCAAGGACGGAG
GGCTGCGCCATTTCGACGCGGAGCAGGCATTTTTGAAAGCGGGCACCGAT
GAGGAGTTGTATATAGAGATCCCCGAGGAGTACCAGAAGTTTCCGGGGGC
AGTGGGACGGCTGAACAAGACCATTTACGGGCTCGTACAGGCGGGGAGGT
GCTGGAACAACAACTTCTACGGCGATATGGCGTCGATTGGATTCGAGAAG
GGAAAGGCGGATCCGTGCGTGTTCCGTAAGGTCGTTGATGGCGAGGCAGA
AGTGGTGGTGGTTGTACACGTGGACGATATTCTTGCTCACGCCAAAGACA
AAGTGACGATGGATATATTCGCGGCTGAGCTTAGACAAAAGTTTAAATTA
AAAGACATGGGTGACGCCAGGTACAACATGGGCTGTCACATTACTAAGAA
CCGCAAGGCGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAGTCGA
TGGTGGAAACGTTCGACGTCAAAAAGGGAAGAAATATATTGGCTACGTCG
GGGGTGCCAATACTCTCAAGCGAGCGCAGTACGCGCTGTGGCTAGATGCG
TGACATGATCGAGAATTACGTTTATAAGCAGATGGCTCGGCCGAAGGATA
AGCTCGTGGCTGGCACAAAAAATCTCTACATGCGAAAGGTCGGACAGGAC
GGAAAGGTCGAGAAGTACAAGTGCCGACTTGTCGCTCAAGGCTTCTGGCA
GGTGGAAGGTGTGTACTACACGAAAAATTACTTGCCCACGCCTGCGACCG
TATCAATCGGAATGTTTTTGGCGACGACAGCGGCCAAGGACGGAGGGCTG
CGCCATTTCGACGCGGAGCAGGCATTTTTGAAAGCGGGCACCGATGAGGA
GTTGTATATAGAGATCCCCGAGGAGTACCAGAAGTTTCCGGGGGCAGTGG
GACGGCTGAACAAGACCATTTACGGGCTCGTACAGGCGGGGAGGTGCTGG
AACAACAACTTCTACGGCGATATGGCGTCGATTGGATTCGAGAAGGGAAA
GGCGGATCCGTGCGTGTTCCGTAAGGTCGTTGATGGCGAGGCAGAAGTGG
TGGTGGTTGTACACGTGGACGATATTCTTGCTCACGCCAAAGACAAAGTG
ACGATGGATATATTCGCGGCTGAGCTTAGACAAAAGTTTAAATTAAAAGA
CATGGGTGACGCCAGGTACAACATGGGCTGTCACATTACTAAGAACCGCA
AGGCGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAGTCGATGGTG
GAAACGTTCGACGTCAAAAAGGGAAGAAATATATTGGCTACGTCGGGGGT
GCCAATACTCTCAAGCGAGCGCAGTACGCGCTGTGGCTAG
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