mRNA_H-elongata_contig104155.345.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig104155.345.1
Unique NamemRNA_H-elongata_contig104155.345.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig104155.345.1 vs. uniprot
Match: D7G248_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G248_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 6.360e-56
Identity = 102/130 (78.46%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    4 LKHFNLYRKYYLGASPAQGDPEDSIRTNAIIFLGKVAAQLKPAVRDKILLPAFARGVKDPFVATRLAGLRATAACHQHFRAEEVCAKVLPSVMPCLIDPGSEAVREAAFSCVETYLERLKEVSAKLKVQE 393
            L   N+  K     +  QGD EDSIRTNAIIFLGKVAAQL PAVRDK+LLPAFARGVKDPFVATRLAGLRATAACHQHFRAEEVCAKVLP+VM CLIDPGSEAVREAAF+CV+TYL +L+EVS ++KV+E
Sbjct:  379 LSEKNMNDKLIKHLARLQGDAEDSIRTNAIIFLGKVAAQLSPAVRDKVLLPAFARGVKDPFVATRLAGLRATAACHQHFRAEEVCAKVLPTVMLCLIDPGSEAVREAAFACVDTYLCKLREVSERMKVEE 508          
BLAST of mRNA_H-elongata_contig104155.345.1 vs. uniprot
Match: A0A835ZEQ5_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEQ5_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.000e-40
Identity = 75/116 (64.66%), Postives = 90/116 (77.59%), Query Frame = 1
Query:   16 NLYRKYYLGASPAQGDPEDSIRTNAIIFLGKVAAQLKPAVRDKILLPAFARGVKDPFVATRLAGLRATAACHQHFRAEEVCAKVLPSVMPCLIDPGSEAVREAAFSCVETYLERLK 363
            N+  K     +  QGDPEDSIRTN IIFLGK+A +LKPAVRDK+LLPAFARG++DPF A RLAGLRATAAC  +    +VC +VLP VMPCL+D  S AVREAAF+CVE YL +++
Sbjct:  427 NMNDKLIRHLARLQGDPEDSIRTNTIIFLGKIAGKLKPAVRDKVLLPAFARGIRDPFPAARLAGLRATAACAAYCEPMDVCTRVLPVVMPCLVDQASHAVREAAFACVELYLAKVR 542          
BLAST of mRNA_H-elongata_contig104155.345.1 vs. uniprot
Match: A0A7S2PSF7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PSF7_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.070e-24
Identity = 64/133 (48.12%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    4 LKHFNLYRKYYLGASPAQGDPEDSIRTNAIIFLGKVAAQLKPAVRDKILLPAFARGVKDPFVATRLAGLRATAACHQHFRAEEVCAKVLPSVMPCLIDPGSEAVREAAFSCVETYLERLKEVSAKLKVQEKER 402
            L H NL  K        Q DPE SIRTN +IF+GKVA  L    R K++LPAF R +KDPF   RLA LRA  AC ++F  +EV  KVLP V+P  +D G+  VR  AF+ V+T+L  L+E S ++   E ER
Sbjct:  485 LNHANL-EKLVRYLVRLQADPEASIRTNTVIFIGKVAPHLTETSRQKLILPAFTRSMKDPFTPCRLAALRAVIACKEYFSQKEVAEKVLPCVIPHTLD-GANEVRAEAFNVVDTFLVNLREESKRMAKDEAER 615          
BLAST of mRNA_H-elongata_contig104155.345.1 vs. uniprot
Match: B8C7X9_THAPS (Protein kinase domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7X9_THAPS)

HSP 1 Score: 103 bits (257), Expect = 4.650e-23
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 1
Query:   55 QGDPEDSIRTNAIIFLGKVAAQLKPAVRDKILLPAFARGVKDPFVATRLAGLRATAACHQHFRAEEVCAKVLPSVMPCLIDPGSEAVREAAFSCVETYLERLKEVSAKLKVQEKER 402
            Q DPE SIRTN +IF+GKVA  L    R K++LPAF R +KDPF   RL+ L+A  +C Q+F  ++V  KVLPS++P L+D  ++ VR  AF  VET +  LKE S ++   E ER
Sbjct:  509 QADPEASIRTNTVIFIGKVAPNLTDMSRQKLILPAFTRAMKDPFTPCRLSALKAVISCKQYFTQKDVAEKVLPSIVPHLLDSTND-VRVEAFKVVETLMGGLKEESQRMTKDEAER 623          
BLAST of mRNA_H-elongata_contig104155.345.1 vs. uniprot
Match: A0A7S2EPS3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EPS3_TRICV)

HSP 1 Score: 99.8 bits (247), Expect = 6.840e-23
Identity = 55/109 (50.46%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   55 QGDPEDSIRTNAIIFLGKVAAQLKPAVRDKILLPAFARGVKDPFVATRLAGLRATAACHQHFRAEEVCAKVLPSVMPCLIDPGSEAVREAAFSCVETYLERLKEVSAKL 381
            Q DPE SIRTN +IF+GK+A QL   VR K++LPAFAR +KD F   RLA LRA  AC   F   +V  KVLP+V P L+D  +E VR  AF   E+ +E L+  S ++
Sbjct:   92 QSDPESSIRTNTVIFIGKIAPQLGDVVRSKLILPAFARAMKDEFPPCRLAALRAVRACKGLFSPGDVAGKVLPAVAPHLVDTAAE-VRAEAFGAAESMMEGLRAESQRM 199          
BLAST of mRNA_H-elongata_contig104155.345.1 vs. uniprot
Match: A0A7S2U6Q9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U6Q9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.130e-22
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   55 QGDPEDSIRTNAIIFLGKVAAQLKPAVRDKILLPAFARGVKDPFVATRLAGLRATAACHQHFRAEEVCAKVLPSVMPCLIDPGSEAVREAAFSCVETYLERLKEVSAKLKVQEK 396
            QGD E SIRTN +IF+GK+A+ L    R +++LPAF R +KDPF   RLA LRA   C  +FR ++V AKVLP V+P L+D   E VR+ AF+ V+ ++  L+  S  + +QEK
Sbjct:  465 QGDAESSIRTNTVIFIGKIASHLSDTSRQRLILPAFTRAMKDPFTPCRLAALRAVLHCRVYFRPKDVAAKVLPCVVPHLMDSVQE-VRKEAFAVVDEFMIVLRAESQTMALQEK 577          
BLAST of mRNA_H-elongata_contig104155.345.1 vs. uniprot
Match: K0TA70_THAOC (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TA70_THAOC)

HSP 1 Score: 101 bits (251), Expect = 2.960e-22
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 1
Query:   55 QGDPEDSIRTNAIIFLGKVAAQLKPAVRDKILLPAFARGVKDPFVATRLAGLRATAACHQHFRAEEVCAKVLPSVMPCLIDPGSEAVREAAFSCVETYLERLKEVSAKLKVQEKER 402
            Q DPE SIRTN +IF+GK+A  L    R K++LPAF R +KDPF   RL+ LRA  +C ++F   +V  KVLPSV+P  +D  ++ VR  AF  V+  L  L+E S K+  +E++R
Sbjct:  568 QADPEASIRTNTVIFIGKIAPNLTEMSRQKLILPAFTRAMKDPFTPCRLSALRAVISCKEYFSQRDVADKVLPSVVPYTLDAAND-VRSEAFGVVDALLVGLREESQKMSKEEQDR 682          
BLAST of mRNA_H-elongata_contig104155.345.1 vs. uniprot
Match: A0A1Y1VQV0_9FUNG (ARM repeat-containing protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1VQV0_9FUNG)

HSP 1 Score: 95.1 bits (235), Expect = 4.370e-20
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   55 QGDPEDSIRTNAIIFLGKVAAQLKPAVRDKILLPAFARGVKDPFVATRLAGLRATAACHQHFRAEEVCAKVLPSVMPCLIDPGSEAVREAAFSCVETYLERLKEVSAKL 381
            Q D E  IRTN  I +GK+A  L P+ R +IL+PAFAR +KDPFV  R AGL A  A    F  EE+ +K++P   PCLIDP  + VR+ AF  + TY+++L+  S ++
Sbjct:  446 QVDEEPGIRTNTTILIGKLAKNLNPSTRKRILIPAFARSLKDPFVPARNAGLLAFNASADLFDVEEMASKIIPCASPCLIDPD-KTVRQNAFKVLNTYIKKLEHNSEQM 553          
BLAST of mRNA_H-elongata_contig104155.345.1 vs. uniprot
Match: A0A1Z5JFM6_FISSO (SCY1-like protein 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFM6_FISSO)

HSP 1 Score: 92.0 bits (227), Expect = 5.050e-19
Identity = 51/109 (46.79%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   55 QGDPEDSIRTNAIIFLGKVAAQLKPAVRDKILLPAFARGVKDPFVATRLAGLRATAACHQHFRAEEVCAKVLPSVMPCLIDPGSEAVREAAFSCVETYLERLKEVSAKL 381
            Q DPE  IRTN +I  GK+A  L    R K+LLPAFAR +KDPF+  RL+ L+      Q F   E+  KVLP+V P L+D GS+ VR+ AF  ++ +L  LK+ S K+
Sbjct:  445 QSDPEQGIRTNTVIVFGKLAPFLTEVSRQKLLLPAFARALKDPFIPCRLSALKCLLKVKQFFTPAEIAGKVLPAVSPFLLD-GSKDVRKEAFLVLDDFLFSLKQESEKM 552          
BLAST of mRNA_H-elongata_contig104155.345.1 vs. uniprot
Match: A0A1Y3NLR2_PIRSE (Protein kinase domain-containing protein (Fragment) n=2 Tax=Piromyces TaxID=4821 RepID=A0A1Y3NLR2_PIRSE)

HSP 1 Score: 90.9 bits (224), Expect = 1.260e-18
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   55 QGDPEDSIRTNAIIFLGKVAAQLKPAVRDKILLPAFARGVKDPFVATRLAGLRATAACHQHFRAEEVCAKVLPSVMPCLIDPGSEAVREAAFSCVETYLERLKEVSAKL 381
            Q D E  IRTN  I +GK+A  L P+ R +IL+PA+AR +KDPFV  R AGL A  A    F  EE+  KV+P V PCL+DP  + VR+  F  + T +++L++ S ++
Sbjct:  445 QVDEEPGIRTNTTILIGKLAKNLNPSTRKRILIPAYARSLKDPFVPARNAGLLAFNASIDLFDVEEMATKVIPCVSPCLVDPD-KTVRQNGFKTIATCIKKLEQNSEQM 552          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig104155.345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G248_ECTSI6.360e-5678.46Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835ZEQ5_9STRA1.000e-4064.66Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S2PSF7_9STRA1.070e-2448.12Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
B8C7X9_THAPS4.650e-2349.14Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A7S2EPS3_TRICV6.840e-2350.46Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2U6Q9_9STRA2.130e-2248.25Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
K0TA70_THAOC2.960e-2246.55Protein kinase domain-containing protein (Fragment... [more]
A0A1Y1VQV0_9FUNG4.370e-2046.79ARM repeat-containing protein n=1 Tax=Anaeromyces ... [more]
A0A1Z5JFM6_FISSO5.050e-1946.79SCY1-like protein 1 n=2 Tax=Fistulifera solaris Ta... [more]
A0A1Y3NLR2_PIRSE1.260e-1844.95Protein kinase domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig104155contigH-elongata_contig104155:213..1077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.2
Seed ortholog evalue4.9e-48
Seed eggNOG ortholog2880.D7G248
Preferred nameCEX1
KEGG koko:K08876
GOsGO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0015031,GO:0015630,GO:0015833,GO:0015931,GO:0031503,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071705,GO:0097064,GO:0097159,GO:1901363
EggNOG free text desc.protein phosphorylation
EggNOG OGsKOG1243@1,KOG1243@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size408
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929575.066221-CDS-H-elongata_contig104155:212..4641622929575.066221-CDS-H-elongata_contig104155:212..464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104155 213..464 +
1691679076.6373062-CDS-H-elongata_contig104155:212..4641691679076.6373062-CDS-H-elongata_contig104155:212..464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104155 213..464 +
1622929575.0840445-CDS-H-elongata_contig104155:921..10771622929575.0840445-CDS-H-elongata_contig104155:921..1077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104155 922..1077 +
1691679076.64909-CDS-H-elongata_contig104155:921..10771691679076.64909-CDS-H-elongata_contig104155:921..1077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104155 922..1077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig104155.345.1prot_H-elongata_contig104155.345.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig104155 213..1077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig104155.345.1

>prot_H-elongata_contig104155.345.1 ID=prot_H-elongata_contig104155.345.1|Name=mRNA_H-elongata_contig104155.345.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MLKHFNLYRKYYLGASPAQGDPEDSIRTNAIIFLGKVAAQLKPAVRDKIL
LPAFARGVKDPFVATRLAGLRATAACHQHFRAEEVCAKVLPSVMPCLIDP
GSEAVREAAFSCVETYLERLKEVSAKLKVQEKERRR
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mRNA from alignment at H-elongata_contig104155:213..1077+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig104155.345.1 ID=mRNA_H-elongata_contig104155.345.1|Name=mRNA_H-elongata_contig104155.345.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=865bp|location=Sequence derived from alignment at H-elongata_contig104155:213..1077+ (Himanthalia elongata Himel1 dioecious)
ATGCTAAAGCACTTTAATCTCTATAGAAAATATTATCTTGGGGCGTCTCC CGCACAGGGGGACCCGGAGGACTCGATCCGGACGAATGCCATCATCTTCC TGGGCAAGGTGGCGGCGCAGTTGAAGCCGGCGGTGAGGGACAAGATTCTC CTGCCCGCGTTCGCCAGGGGCGTTAAGGACCCGTTTGTGGCGACGAGGCT GGCCGGGCTGAGGGCGACCGCGGCGTGCCATCAGCACTTCCGTGCCGAAG AGGTTCGTCATTTTCTATATGCCCGATTGTTTCCTGTGGTACACTCGTGG GGGATAAAACCCCCGGGGATGTATTTATCTCCTCCCCGCGATTGTGATAC CTCGGGGTGGAAGTATATTCTCCCCCCCCCCCGATACGCACAATTCTCTA GGCAGCATCGACGAGTAGGAGCTGTCTACGTGTGCGACTTTCAGGATATT TTTCATAACCTGTGTAATGTTGGCTCTTCCTGGCTGAGCATGTAGCGTCG TGAACCGTCCTCTACCCGGGTGTGTTTGAAATGTGAAAATGGATGTGAAT GTGTTTGTGACCATAGTCAAGGTGGCCGGCCAACATATCTCGACGTACCG GCCAAAATACCGTCCGATATGCTTCGAAGTACCGACGGACGAATGACGTG TTACGATAACTCACGCGCTTGCTGTTCTTGCTGCCGTTGCTCTTGTTGCT GTATTCAAGGTGTGCGCGAAGGTGCTTCCGTCGGTAATGCCGTGCCTCAT CGATCCCGGGTCCGAAGCGGTCCGAGAGGCGGCGTTCTCGTGCGTGGAGA CCTACCTGGAGAGGCTCAAGGAGGTGTCGGCGAAGTTGAAGGTTCAGGAG AAAGAACGACGGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig104155:213..1077+

>mRNA_H-elongata_contig104155.345.1 ID=mRNA_H-elongata_contig104155.345.1|Name=mRNA_H-elongata_contig104155.345.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig104155:213..1077+ (Himanthalia elongata Himel1 dioecious)
ATGCTAAAGCACTTTAATCTCTATAGAAAATATTATCTTGGGGCGTCTCC
CGCACAGGGGGACCCGGAGGACTCGATCCGGACGAATGCCATCATCTTCC
TGGGCAAGGTGGCGGCGCAGTTGAAGCCGGCGGTGAGGGACAAGATTCTC
CTGCCCGCGTTCGCCAGGGGCGTTAAGGACCCGTTTGTGGCGACGAGGCT
GGCCGGGCTGAGGGCGACCGCGGCGTGCCATCAGCACTTCCGTGCCGAAG
AGATGCTAAAGCACTTTAATCTCTATAGAAAATATTATCTTGGGGCGTCT
CCCGCACAGGGGGACCCGGAGGACTCGATCCGGACGAATGCCATCATCTT
CCTGGGCAAGGTGGCGGCGCAGTTGAAGCCGGCGGTGAGGGACAAGATTC
TCCTGCCCGCGTTCGCCAGGGGCGTTAAGGACCCGTTTGTGGCGACGAGG
CTGGCCGGGCTGAGGGCGACCGCGGCGTGCCATCAGCACTTCCGTGCCGA
AGAGGTGTGCGCGAAGGTGCTTCCGTCGGTAATGCCGTGCCTCATCGATC
CCGGGTCCGAAGCGGTCCGAGAGGCGGCGTTCTCGTGCGTGGAGACCTAC
CTGGAGAGGCTCAAGGAGGTGTCGGCGAAGTTGAAGGTTCAGGAGAAAGA
ACGACGGAGGGTGTGCGCGAAGGTGCTTCCGTCGGTAATGCCGTGCCTCA
TCGATCCCGGGTCCGAAGCGGTCCGAGAGGCGGCGTTCTCGTGCGTGGAG
ACCTACCTGGAGAGGCTCAAGGAGGTGTCGGCGAAGTTGAAGGTTCAGGA
GAAAGAACGACGGAGG
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