mRNA_H-elongata_contig103965.334.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig103965.334.1 vs. uniprot
Match: D8LB66_ECTSI (Cyclin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB66_ECTSI) HSP 1 Score: 278 bits (712), Expect = 4.020e-88 Identity = 178/323 (55.11%), Postives = 191/323 (59.13%), Query Frame = 1
Query: 1 SRDVILTTCLFLAGKVTEAPRRLRDVINVIHMLTSTVQDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYSRSLRLHRDVTRTAWSLVNDSLFCPRALSTSQPAVACAAIRLAARVHGWDRRLRWFSPPAKK--------EKLGVDGGGGGRCDGGESKRKHSTQDHERGKCEERGAPPAAAETGVAPEVVFIGPG----CGNGDQEAVAAGWDASAGKLFPSSVVDTSG-----QGEEACGQ-----AERSNTPGDASRERGGDDTGDDESTRTTPWWGLFDARDEEVELVCSELLALYRAHG-GQDASG 900
SRDVILTTCLFLAGKVTEAPRRLRDVINV+HML ST QDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNY+RSLRL R TRTAW L ND LFCPRALS PAVACA IR+AARVHG DRRLRW+SPP +K E + G G+ + G R G NG V G QG A G +S+ G RGGD+ DE T T PWW LFDARDEEVELVCSELLALYRAHG G+ +G
Sbjct: 77 SRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLNSTGQDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYARSLRLDRAATRTAWGLANDVLFCPRALSAPPPAVACAVIRMAARVHGGDRRLRWYSPPVQKISKRRREEEGDAIGGRDLGKVESGMGDRGRGGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGLXXXVNGQHVVTXXXXXXXXXXXXXXXTVGDHGGISGNQGGFAGGADVLVVGVKSSDGG-----RGGDEDQGDE-TATKPWWRLFDARDEEVELVCSELLALYRAHGDGESTAG 393
BLAST of mRNA_H-elongata_contig103965.334.1 vs. uniprot
Match: A0A835YQW0_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQW0_9STRA) HSP 1 Score: 154 bits (388), Expect = 2.470e-41 Identity = 80/141 (56.74%), Postives = 96/141 (68.09%), Query Frame = 1
Query: 4 RDVILTTCLFLAGKVTEAPRRLRDVINVIHMLTSTVQD---EPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYSRSLRLHRDVTRTAWSLVNDSLFCPRALSTSQPAVACAAIRLAARVHGWDRRLRWFS 417
R V+L TCLFLAGKV E PRRLRDVIN +H+ + EPP LD+AYW MKE++VE EQ +LR I F +D PYRLLLNY+RSLRL R++ + AW VND LF P AL S P +ACAAI LAAR+ L W +
Sbjct: 83 RLVVLVTCLFLAGKVRETPRRLRDVINCLHVTAAEPGGGAVEPPRLDQAYWDMKEQVVECEQAVLRIIGFDMDGEHPYRLLLNYARSLRLSRELVQLAWGFVNDFLFIPSALELSPPTLACAAISLAARLTDELNDLNWIT 223
BLAST of mRNA_H-elongata_contig103965.334.1 vs. uniprot
Match: A0A1V9YAW3_9STRA (Cyclin-related protein FAM58A-like isoform 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAW3_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 9.100e-19 Identity = 46/118 (38.98%), Postives = 72/118 (61.02%), Query Frame = 1
Query: 22 TCLFLAGKVTEAPRRLRDVINVIHMLTSTVQDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYSRSLRLHRDVTRTAWSLVNDSLFCPRALSTSQPAVACAAIRLA 375
+C+FLA K+TE PR+LRD++NV + + P+ Y MKER+++ EQ +LR + F++D PY LLNY++ LR R + A +L +D + PR+LS P +A A + +A
Sbjct: 57 SCIFLATKLTEKPRKLRDIMNVAYSIAHKTNSPVPV-GSVYTAMKERLLDAEQNILRVLRFELDMDLPYMYLLNYAKFLRCSRATVQVALTLTSDFFYAPRSLSYDAPIIAAACLYVA 173
BLAST of mRNA_H-elongata_contig103965.334.1 vs. uniprot
Match: A0A485KT39_9STRA (Aste57867_11459 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KT39_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 5.570e-18 Identity = 52/131 (39.69%), Postives = 76/131 (58.02%), Query Frame = 1
Query: 25 CLFLAGKVTEAPRRLRDVINVIHMLTSTVQDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYSRSLRLHRDVTRTAWSLVNDSLFCPRALSTSQPAVACAAIRLAARVHGWDR-RLRWF 414
C+FLA K+TE PR+LRDV+NV + ++ P Y T+KE +++ EQ +LR I F +D P PY+ LLNY++ L R V + A +L +D + PRAL + +A A I LA + D RW+
Sbjct: 38 CIFLATKITEKPRKLRDVMNVAYCVSRNTNTPVPT-GPEYTTLKESLLDAEQSVLRVIRFDMDIPLPYQYLLNYTKVLESPRLVVQIALTLTSDLFYSPRALLYAPHVIAAACIYLAIELLDGDHIASRWW 167
BLAST of mRNA_H-elongata_contig103965.334.1 vs. uniprot
Match: A0A7S0PZF2_9EUKA (Hypothetical protein n=2 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PZF2_9EUKA) HSP 1 Score: 92.8 bits (229), Expect = 7.690e-18 Identity = 50/126 (39.68%), Postives = 76/126 (60.32%), Query Frame = 1
Query: 4 RDVILTTCLFLAGKVTEAPRRLRDVINVIHMLTSTVQDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYSRSLRLHRDVTRTAWSLVNDSLFCPRALSTSQPAVACAAIRLAAR 381
R I TTCLFLA KV E P++L+DV+ + + + + P + + +KERI+ E+VLL+T+ F + PYR LL Y +S++ RD+ + AW+ +NDSL L + V+ AA+ LAAR
Sbjct: 98 RFTIATTCLFLASKVEETPKKLKDVVTETYKIQNAPKAAPEPESQDFKDLKERILVSERVLLQTLGFDLTVEHPYRPLLAYVKSIQGTRDLAQVAWNFINDSLRTTICLQYAPRCVSAAAVALAAR 223
BLAST of mRNA_H-elongata_contig103965.334.1 vs. uniprot
Match: A0A0G4IYJ5_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IYJ5_PLABS) HSP 1 Score: 90.9 bits (224), Expect = 7.900e-18 Identity = 54/138 (39.13%), Postives = 74/138 (53.62%), Query Frame = 1
Query: 13 ILTTCLFLAGKVTEAPRRLRDVINVIHMLTSTVQDEPPL-LDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYSRSLRLHRDVTRTAWSLVNDSLFCPRALSTSQPAVACAAIRLAAR---VHGWDRRLRWF 414
I TCLF+AGK E PRRLRDVIN ++ + D PPL + +W MKE ++E E+++LR I F VD P+ +++ R LR D+ S++NDS P L +AC A+ LA V D WF
Sbjct: 56 IAQTCLFVAGKSQETPRRLRDVINTVYRYRNP--DLPPLEVADPFWQMKEHLIESERLVLRVIAFDVDVVPPHAYAVHFLRDLRASNDLANCTLSILNDSCRIPLCLHYEPHVIACGAMYLATELLSVRPGDGDDEWF 191
BLAST of mRNA_H-elongata_contig103965.334.1 vs. uniprot
Match: A0A7S0J0B8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J0B8_9EUKA) HSP 1 Score: 92.8 bits (229), Expect = 8.240e-18 Identity = 51/126 (40.48%), Postives = 76/126 (60.32%), Query Frame = 1
Query: 4 RDVILTTCLFLAGKVTEAPRRLRDVINVIHMLTSTVQDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYSRSLRLHRDVTRTAWSLVNDSLFCPRALSTSQPAVACAAIRLAAR 381
R I TTCLFLA KV E P++L+DV+ + +T + P + + +KERI+ E+VLL+T+ F + PYR LL Y +S++ RD+ + AW+ +NDSL L + V+ AA+ LAAR
Sbjct: 100 RFTIATTCLFLASKVEETPKKLKDVVIETFKIQNTPKPPPEPDSQEFKDLKERILVSERVLLQTLGFDLTVEHPYRPLLAYVKSIQGTRDLAQVAWNFINDSLRTTICLQYAPRCVSAAAVSLAAR 225
BLAST of mRNA_H-elongata_contig103965.334.1 vs. uniprot
Match: A0A7S0I6B2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I6B2_9EUKA) HSP 1 Score: 92.0 bits (227), Expect = 3.240e-17 Identity = 48/123 (39.02%), Postives = 73/123 (59.35%), Query Frame = 1
Query: 13 ILTTCLFLAGKVTEAPRRLRDVINVIHMLTSTVQDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYSRSLRLHRDVTRTAWSLVNDSLFCPRALSTSQPAVACAAIRLAAR 381
I TTCLFLAGKV E P++++DV+ + P K +W +KE I+ E++LL+T++F + YR LL Y +S++ RD+ + AW+ +NDSL AL VA +A+ LA+R
Sbjct: 127 IATTCLFLAGKVEETPKKIKDVVIEAYKAQHQKPTGPEPESKEFWALKEEILVCERILLQTLDFDLTVEHAYRPLLAYVKSIKGTRDLAQVAWNFINDSLRTTIALQYPPRCVAASAVHLASR 249
BLAST of mRNA_H-elongata_contig103965.334.1 vs. uniprot
Match: A0A7S3Z2D4_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z2D4_9EUKA) HSP 1 Score: 89.7 bits (221), Expect = 5.740e-17 Identity = 46/119 (38.66%), Postives = 70/119 (58.82%), Query Frame = 1
Query: 22 TCLFLAGKVTEAPRRLRDVINVIHMLTSTVQDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYSRSLRLHRDVTRTAWSLVNDSLFCPRALSTSQPAVACAAIRLAA 378
TCLFLA KV E RR+RD++NV + L + EP + YW MKE +V EQ++LR + F + P+ +L++ + L+ ++ +WSL+NDS L A+AC+AI +AA
Sbjct: 78 TCLFLASKVEENSRRMRDILNVTYRLEHP-EREPLQVTNEYWQMKEAVVRHEQLVLRVLEFNLTSRHPHHYVLHFLKDLQATEELATLSWSLLNDSYRSTLCLQHKPEAIACSAIYIAA 195
BLAST of mRNA_H-elongata_contig103965.334.1 vs. uniprot
Match: T0SBG4_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SBG4_SAPDV) HSP 1 Score: 87.4 bits (215), Expect = 7.290e-17 Identity = 44/118 (37.29%), Postives = 72/118 (61.02%), Query Frame = 1
Query: 22 TCLFLAGKVTEAPRRLRDVINVIHMLTSTVQDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYSRSLRLHRDVTRTAWSLVNDSLFCPRALSTSQPAVACAAIRLA 375
+C+FL+ K++E PR+LRD++NV + + P Y +MKER+++ EQ +LR + F +D PY+ LLNY+R LR+ + + A +L +D + P +L+ P VA A I +A
Sbjct: 55 SCIFLSTKLSEKPRKLRDIMNVAYSIAHKTNSPVPT-GSEYTSMKERLLDGEQNVLRVLRFDLDMDLPYKYLLNYARFLRVSKATVQVALTLASDLFYAPSSLTYDAPIVAVACIYIA 171 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103965.334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103965.334.1 >prot_H-elongata_contig103965.334.1 ID=prot_H-elongata_contig103965.334.1|Name=mRNA_H-elongata_contig103965.334.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=300bp SRDVILTTCLFLAGKVTEAPRRLRDVINVIHMLTSTVQDEPPLLDKAYWTback to top mRNA from alignment at H-elongata_contig103965:544..2307- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103965.334.1 ID=mRNA_H-elongata_contig103965.334.1|Name=mRNA_H-elongata_contig103965.334.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1764bp|location=Sequence derived from alignment at H-elongata_contig103965:544..2307- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103965:544..2307- >mRNA_H-elongata_contig103965.334.1 ID=mRNA_H-elongata_contig103965.334.1|Name=mRNA_H-elongata_contig103965.334.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1800bp|location=Sequence derived from alignment at H-elongata_contig103965:544..2307- (Himanthalia elongata Himel1 dioecious)back to top |