mRNA_H-elongata_contig10394.331.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10394.331.1
Unique NamemRNA_H-elongata_contig10394.331.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10394.331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10394contigH-elongata_contig10394:6314..9115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1550
Cds size435
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10394.331.1prot_H-elongata_contig10394.331.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10394 7428..9115 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929573.5999043-UTR-H-elongata_contig10394:6313..74271622929573.5999043-UTR-H-elongata_contig10394:6313..7427Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10394 6314..7427 -
1691679076.0903995-UTR-H-elongata_contig10394:6313..74271691679076.0903995-UTR-H-elongata_contig10394:6313..7427Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10394 6314..7427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929573.6209114-CDS-H-elongata_contig10394:7427..75661622929573.6209114-CDS-H-elongata_contig10394:7427..7566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10394 7428..7566 -
1691679076.098464-CDS-H-elongata_contig10394:7427..75661691679076.098464-CDS-H-elongata_contig10394:7427..7566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10394 7428..7566 -
1622929573.6373656-CDS-H-elongata_contig10394:7754..78811622929573.6373656-CDS-H-elongata_contig10394:7754..7881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10394 7755..7881 -
1691679076.1071415-CDS-H-elongata_contig10394:7754..78811691679076.1071415-CDS-H-elongata_contig10394:7754..7881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10394 7755..7881 -
1622929573.6526384-CDS-H-elongata_contig10394:8239..83001622929573.6526384-CDS-H-elongata_contig10394:8239..8300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10394 8240..8300 -
1691679076.1160367-CDS-H-elongata_contig10394:8239..83001691679076.1160367-CDS-H-elongata_contig10394:8239..8300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10394 8240..8300 -
1622929573.6742074-CDS-H-elongata_contig10394:9007..91151622929573.6742074-CDS-H-elongata_contig10394:9007..9115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10394 9008..9115 -
1691679076.1257234-CDS-H-elongata_contig10394:9007..91151691679076.1257234-CDS-H-elongata_contig10394:9007..9115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10394 9008..9115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10394.331.1

>prot_H-elongata_contig10394.331.1 ID=prot_H-elongata_contig10394.331.1|Name=mRNA_H-elongata_contig10394.331.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
HSSSLDSSSTIYSYSYDDDWSWSDDYWYDGTHTESIAALELTYTATDSDY
LFGSPSWLNYPHQDRVVGSYEAGESRTQIVFAGYDGGWSQDCTLQSLSGS
YITTNSGSTIGTHRSQTSWYPYASNSFPDDVDCMIAGVISYSTS*
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mRNA from alignment at H-elongata_contig10394:6314..9115-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10394.331.1 ID=mRNA_H-elongata_contig10394.331.1|Name=mRNA_H-elongata_contig10394.331.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2802bp|location=Sequence derived from alignment at H-elongata_contig10394:6314..9115- (Himanthalia elongata Himel1 dioecious)
CACTCATCGAGCTTAGATTCTAGTAGCACCATCTACAGCTATAGCTATGA
CGACGACTGGTCGTGGTCCGACGACTACTGGTACGACGGTACTCACACCG
AGAGCATCGTGAGAAACCTGGGTCGACCGGGGCAAAATGAAGCACCGTTG
GAAGCGACGTCCTGTGTCGCTAACTATTTGGATACGGTATCGAATATATA
CATAGATAGCATATGATGTTTCTCGTTCCATCCCCTCTGGGCGATTGAGA
CTTCAAAATGGCGAGTGCCATGAGGGAATTTATTTCTCTCTGATACAGGA
AGCCGTCCTCGAGCGTCTTCCGAAGACTGTGTTACGTAGTGATACCTTAG
AGAGGCGTGTGATATCAATCCTGAATATTATTTAGTCGATGACGATTCGA
AAATAGAGATGAAGTATGTAAGTGTAGGGGATAATTATGGATTTACTATT
GGAAAACACGAATTATCATAATATGTGACGATTTTGTGCTCAAAGGTAGT
AATAATGTACACATTCGAACCTGACGGTAGTTGGTCCCCTGGACTACACC
TTTCACGGTGCTAAGAAGGTGTGGATGTTCGGACGGTTGGAATGAGTTCA
TATATTTTAAAATATAACTATACAATAGGATGTGAACTTGGGAGTTCCAA
TAGTTGTCGCATGTTATTTCGTAATATTGTCGATTGGCGATAATACACGC
GGATAATCACGGATGGGTGTCTTCGAATGGTCGTGAAGCATATCGCATTG
CATCGTCTGACAAAACGTTTGTGTGCTGCTTCGGTTTCTCGTGTCGTGAT
CCCCTTACTACACAGGCCGCACTTGAGCTGACCTACACAGCGACCGACTC
GGACTACTTGTTCGGCTCGCCAAGCTGTGAGAGAACCTAGTGTGCTTGTC
GAGGGATGCGTCGTCGAAGAACTTACGGATAGTGATAAATCCGATCGAAC
AATGCTCGCGGGTACTCCTGTCGAGCTCTCTTGTTCCTCAGGCCTGAGGC
GGCTCAAACATTGTTGGCCACGAAGAGCATTCCCCAGCAGCTCCGTTTTT
GAAATATTTGGGATCGACTTGTTTCACAGCTTTATAAGCCTCAGCCTAAA
AAGCTAAGCCCACGATAGGTGTCGAGCTCGTTCTAGTGAGGGTTTCGTGT
ATGCCGATCAACTTCCACCCCTCGCCCCCATCTCTCGCCGGGTCTTCGTC
GTTAACTGGCCATGGACTCCGGTGCTGTACGCAGGGCTAAACTACCCCCA
CCAGGATAGAGTCGTAGGTAGCTACGAGGCCGGGGAGAGCCGCACACAGA
TCGTATTCGCCGGATACGACGGCGGCTGGTCCCAAGACTGCACCCTTCAG
TCCCTGTCTGGGTAAGAGTTCCAGCGAAGCTGAGGGGTCCCCCCTTTCCA
ATTATTTTATCAGTAGTAATGTTTCACACAACCGTAGAGGAGAAGCTAGC
TGTTGTTCCACTCGCTCAAAGAATTGTGTTGTTATTCCGTTCGTCAACAG
CAACATCGTCTCGGTTTGTCTTTGCTGTGTGTGTCCGTTCTACGAACAGG
AGCTACATCACCACGAACAGCGGCAGCACGATCGGCACCCACAGGTCGCA
GACCAGTTGGTACCCGTACGCCAGTAACTCTTTCCCTGATGATGTTGACT
GTATGATTGCCGGTGTTATCAGCTACTCTACATCCTAAGCTCACATAGGC
ATTCCAGCCGTCGCCCGCCCATATCCCATCCTGTGCGATAGTCCTCTTGA
CCTTAAATATTTTATGGTGTGCAATATATTTAATGGGGATATATGATGTT
CGTAATCTTCGTCGGAGACCCTTGGTTGGAGCATATCGCTTGCATATTAA
TTAGGCATACTGGGGTTCCAAATATTCGGCAGGACTTGTGCAATGAATGT
CTCTTGAGGAAGTCCAGTTTTCTCTCCATCTAACAAAGAAAGTAACTCCT
CCCGGGATACTCTAGACAGTGCTCTGAACGACGAAGAAAGCGTTTCCCGG
CAGAACAAAAGGTGGCACTTTGCCGCAGAGCATGATGTTGTCACCAAGAC
AAGTCAGGGGGCACAAGGCAAGCAGCCTGACAACGCCTTCGAATTCCGTC
CAAACAAGTTCTAGCATCGATGGCCACCTTGCGTCGACGTGGGGCGTTAG
CTATACAACCGTCGTATATTTATAGGGAAAATATAGAACTACTTGCTGCA
TGAAGTTTTTTTTTAAGTATTCCATTGGGTGTCCCAGAGAGAACGGGGGT
AAAGAATGAATGTGTTTTCGCCCGTGCACAGAGTGCGGCGGCAGTGTTGA
AGGGGCGTGCGGTCTTTACGTCACAAATGGAGTTCGAAGACAAGTAGATG
TCTTGGATTTCAGACTACTAATAGCCGTATTTTTCAAATAATGCTACTGT
ATTATTTTTCTACACCAGCGGGGATCTTTTCAGCCGGTTGTTCGTGAACG
ACTTAACTGCAGTAAAACGATGGGACGCCTGCTACCTTTGTGCTGTTCCG
TCCTTGTGAATCAAGTCTGATCCCCATTTTAGTTGATTTATTTGATGGGC
TCTCCGTGGACATGAAGTCGGCATCGGCACTATATATTTTGGGGTCATCA
ACAACAACCCCGAAATGATGCCCCATATACAGTATCAAAGGTAGTACAAC
ATCATCAGTAGTCCTTATTTTTTCGATTATTGATAGTGTAAGTGTACAGT
ATTACAGTACGGTGGACTTTTCCCCGGTAATATCATTTTGGCCCTAACGT
GGCTATCAATAAAAAACACAAGGTCATTATCTTATGATGATATTGTTAAT
AC
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Coding sequence (CDS) from alignment at H-elongata_contig10394:6314..9115-

>mRNA_H-elongata_contig10394.331.1 ID=mRNA_H-elongata_contig10394.331.1|Name=mRNA_H-elongata_contig10394.331.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig10394:6314..9115- (Himanthalia elongata Himel1 dioecious)
CACTCATCGAGCTTAGATTCTAGTAGCACCATCTACAGCTATAGCTATGA
CGACGACTGGTCGTGGTCCGACGACTACTGGTACGACGGTACTCACACCG
AGAGCATCCACTCATCGAGCTTAGATTCTAGTAGCACCATCTACAGCTAT
AGCTATGACGACGACTGGTCGTGGTCCGACGACTACTGGTACGACGGTAC
TCACACCGAGAGCATCGCCGCACTTGAGCTGACCTACACAGCGACCGACT
CGGACTACTTGTTCGGCTCGCCAAGCTGCCGCACTTGAGCTGACCTACAC
AGCGACCGACTCGGACTACTTGTTCGGCTCGCCAAGCTGGCTAAACTACC
CCCACCAGGATAGAGTCGTAGGTAGCTACGAGGCCGGGGAGAGCCGCACA
CAGATCGTATTCGCCGGATACGACGGCGGCTGGTCCCAAGACTGCACCCT
TCAGTCCCTGTCTGGGGCTAAACTACCCCCACCAGGATAGAGTCGTAGGT
AGCTACGAGGCCGGGGAGAGCCGCACACAGATCGTATTCGCCGGATACGA
CGGCGGCTGGTCCCAAGACTGCACCCTTCAGTCCCTGTCTGGGAGCTACA
TCACCACGAACAGCGGCAGCACGATCGGCACCCACAGGTCGCAGACCAGT
TGGTACCCGTACGCCAGTAACTCTTTCCCTGATGATGTTGACTGTATGAT
TGCCGGTGTTATCAGCTACTCTACATCCTAAGAGCTACATCACCACGAAC
AGCGGCAGCACGATCGGCACCCACAGGTCGCAGACCAGTTGGTACCCGTA
CGCCAGTAACTCTTTCCCTGATGATGTTGACTGTATGATTGCCGGTGTTA
TCAGCTACTCTACATCCTAA
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