mRNA_H-elongata_contig103753.315.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103753.315.1
Unique NamemRNA_H-elongata_contig103753.315.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 4.920e-38
Identity = 93/238 (39.08%), Postives = 129/238 (54.20%), Query Frame = 1
Query:    4 CEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADY---ITPQELSIKCVRMDNGGEFEGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIAL-MEELDIIINVPREK-LWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFP 702
            C      KG+   + K+TD RA+ K  R FL++GG M+  S+GGN Y +I  DD TR+  + F+K KSD  AA    +ADY     P E+ +   R D GGEF+G+F     R  I  E TPPNTP+YNGVAERALG L + A+A  ++  ++  + P    LWA+A+  AC   N + TT   G K P EL+ G  P      PF +     +S R+ +  P+  K   +G+P   P
Sbjct:  169 CLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFV--ARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF-LKPLVFKSRRKARSQPRARKDGTLGLPTITP 403          
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 4.070e-37
Identity = 91/235 (38.72%), Postives = 129/235 (54.89%), Query Frame = 1
Query:   25 KGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYITPQELSIKCV-RMDNGGEFEGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIAL-MEELDIIINVPREK-LWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSV 720
            KG+   V K+T  RA  K  R +LD+GG MK  S+GGN Y +I  DD++R+  + F+K KSD        +ADY T       C+ R D GGEF+G+F     R  I  E TPP+TP+YNGVAERALG + + A+A  ++   +  + P    LWA+A+  AC   N + T S +G K  YE++  + P      PF +     +S R+ K  PKGEK  ++G   N P   +S+
Sbjct:    3 KGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF-LKPAVFKSRRKAKSQPKGEKGWYLGPAHNHPRECLSM 236          
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 7.750e-36
Identity = 93/255 (36.47%), Postives = 133/255 (52.16%), Query Frame = 1
Query:    4 CEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYIT---PQELSIKCVRMDNGGEF-EGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIALMEELDIII----NVPREKLWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRTRQI 744
            C      KG    +P  T  RA  K +R F+D+ G  +  SLGG  Y +I  DDYTR+  + F+K KSD   A    +A+      P ++ +  VR DNGGEF EG+F R   +  I  E TP ++P+YNGVAERALG +++ A+A   +   +     N P   LWA+A+ ++C+  N + TTS    K PYE+W G+ P      PF +     +  R HK  PK +KC ++G   N     V +L  + R I
Sbjct:  708 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAI 957          
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 7.810e-36
Identity = 93/255 (36.47%), Postives = 133/255 (52.16%), Query Frame = 1
Query:    4 CEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYIT---PQELSIKCVRMDNGGEF-EGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIALMEELDIII----NVPREKLWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRTRQI 744
            C      KG    +P  T  RA  K +R F+D+ G  +  SLGG  Y +I  DDYTR+  + F+K KSD   A    +A+      P ++ +  VR DNGGEF EG+F R   +  I  E TP ++P+YNGVAERALG +++ A+A   +   +     N P   LWA+A+ ++C+  N + TTS    K PYE+W G+ P      PF +     +  R HK  PK +KC ++G   N     V +L  + R I
Sbjct:  543 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAI 792          
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 7.850e-36
Identity = 93/255 (36.47%), Postives = 133/255 (52.16%), Query Frame = 1
Query:    4 CEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYIT---PQELSIKCVRMDNGGEF-EGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIALMEELDIII----NVPREKLWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRTRQI 744
            C      KG    +P  T  RA  K +R F+D+ G  +  SLGG  Y +I  DDYTR+  + F+K KSD   A    +A+      P ++ +  VR DNGGEF EG+F R   +  I  E TP ++P+YNGVAERALG +++ A+A   +   +     N P   LWA+A+ ++C+  N + TTS    K PYE+W G+ P      PF +     +  R HK  PK +KC ++G   N     V +L  + R I
Sbjct:  556 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAI 805          
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.070e-35
Identity = 93/255 (36.47%), Postives = 133/255 (52.16%), Query Frame = 1
Query:    4 CEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYIT---PQELSIKCVRMDNGGEF-EGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIALMEELDIII----NVPREKLWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRTRQI 744
            C      KG    +P  T  RA  K +R F+D+ G  +  SLGG  Y +I  DDYTR+  + F+K KSD   A    +A+      P ++ +  VR DNGGEF EG+F R   +  I  E TP ++P+YNGVAERALG +++ A+A   +   +     N P   LWA+A+ ++C+  N + TTS    K PYE+W G+ P      PF +     +  R HK  PK +KC ++G   N     V +L  + R I
Sbjct:  699 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNDKRRAI 948          
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.760e-35
Identity = 92/255 (36.08%), Postives = 133/255 (52.16%), Query Frame = 1
Query:    4 CEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYIT---PQELSIKCVRMDNGGEF-EGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIALMEELDIII----NVPREKLWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRTRQI 744
            C      KG    +P  T   A  K +R F+D+ G ++  SLGG  Y +I  DDYTR+  + F+K KSD   A    +A+      P ++ +  VR DNGGEF EG+F R   +  I  E TP + P++NGVAERALGP+++ A+A   +   +     N P   LWA+A+ ++C+  N + TTS    K PYE+W G+ P      PF +     +  R HK  PK +KC ++G   N     V +L  + R I
Sbjct:  544 CLGCSTAKGLSKPIPNKTSTGALKKLQRVFVDLSGKVRVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHIPEHNGVAERALGPIKDAALAARIQAPTLYPGAPNYP--SLWAKAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAI 793          
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 2.590e-35
Identity = 94/235 (40.00%), Postives = 129/235 (54.89%), Query Frame = 1
Query:   43 VPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYIT---PQELSIKCVRMDNGGEFEGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPL---REKAIAL-MEELDIIINVPREK-LWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSVL 723
            V K+T  RA  K  R +LD+GG MK  S+GGN Y +I  DD++R+  + F+K KSD    L   +ADY T   P E+ I   R D GGEF+G+F     R  I  E TPP+TP+YNGVAERALG L    + A+A  ++   +  + P    LWA+A+  AC   N + T S +G K  YE++  + P      PF +     +S R+ K  PKGEK  ++G   N P   V +L
Sbjct:  633 VQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYI--ARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF-LKPAMLKSRRKAKSQPKGEKGWYVGPAHNHPRYCVVML 864          
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 3.440e-35
Identity = 91/251 (36.25%), Postives = 130/251 (51.79%), Query Frame = 1
Query:    4 CEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYITPQELS-IKCVRMDNGGEF-EGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIALMEELDIII-NVPREK-LWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRTRQI 744
            C      KG    +P  T  RA  K +RFF+++ G  +  SLGG  Y +I  DDYTR+  + F+K KSD   A    + +       S +  VR DNGGEF EG+F R   +  I  E TP ++P+YNGVAERALG +++ AIA   +   +    P  + LWA+A+ ++C+  N + TTS    K PYE+W G+ P      PF +     +  R HK  P  +KC ++G   N     V +L  + R I
Sbjct:  341 CLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPTAQKCFYLGPGINTNRDCVRILNEKRRAI 590          
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 3.520e-35
Identity = 85/240 (35.42%), Postives = 125/240 (52.08%), Query Frame = 1
Query:    1 ACEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYITPQELS-IKCVRMDNGGEF-EGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIALMEELDII---INVPR-EKLWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFP 702
            AC      K  R  + + T  R+  K  R F D+GG    +S+GG  Y +I  DD+TR   + F++ KSD  +A  + +A        S ++ VR DNGG+F  G F    +   I  E TP  +PQYNGVAER LG + E A+A   +  ++   + +P+ +KLWA+AM +AC+  N +  ++      PYE+W+G  P      PF    Y R   R  K+ PKGE C ++G  R+ P
Sbjct:   66 ACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQ-RPSKLLPKGESCFYVGPSRDHP 303          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE4.920e-3839.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAM7_9PHAE4.070e-3738.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JTI6_9PHAE7.750e-3636.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE7.810e-3636.47Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE7.850e-3636.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.070e-3536.47Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5L3E0_9PHAE1.760e-3536.08Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JM30_9PHAE2.590e-3540.00Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K1N9_9PHAE3.440e-3536.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KVR5_9PHAE3.520e-3535.42Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103753contigH-elongata_contig103753:447..1196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.8
Seed ortholog evalue1.4e-16
Seed eggNOG ortholog90675.XP_010418825.1
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGs37SNQ@33090,3GHRQ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size750
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103753.315.1prot_H-elongata_contig103753.315.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103753 558..998 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.378958-UTR-H-elongata_contig103753:446..5571622929572.378958-UTR-H-elongata_contig103753:446..557Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103753 447..557 +
1691679075.6270764-UTR-H-elongata_contig103753:446..5571691679075.6270764-UTR-H-elongata_contig103753:446..557Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103753 447..557 +
1622929572.4087172-UTR-H-elongata_contig103753:998..11961622929572.4087172-UTR-H-elongata_contig103753:998..1196Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103753 999..1196 +
1691679075.6453269-UTR-H-elongata_contig103753:998..11961691679075.6453269-UTR-H-elongata_contig103753:998..1196Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103753 999..1196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.395925-CDS-H-elongata_contig103753:557..9981622929572.395925-CDS-H-elongata_contig103753:557..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103753 558..998 +
1691679075.6368003-CDS-H-elongata_contig103753:557..9981691679075.6368003-CDS-H-elongata_contig103753:557..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103753 558..998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103753.315.1

>prot_H-elongata_contig103753.315.1 ID=prot_H-elongata_contig103753.315.1|Name=mRNA_H-elongata_contig103753.315.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
MKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYITPQE
LSIKCVRMDNGGEFEGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPL
REKAIALMEELDIIINVPREKLWAQAMLFACDVTNKSVTTSTDGIK*
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mRNA from alignment at H-elongata_contig103753:447..1196+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103753.315.1 ID=mRNA_H-elongata_contig103753.315.1|Name=mRNA_H-elongata_contig103753.315.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=750bp|location=Sequence derived from alignment at H-elongata_contig103753:447..1196+ (Himanthalia elongata Himel1 dioecious)
GCATGCGAGGCGTATTTCCAGGTGAAGGGGAAGCGATATGCTGTGCCAAA GACGACGGACGAGCGGGCTAGCGTGAAAGGACGGCGGTTCTTTCTCGACG TGGGTGGGCCGATGAAGCACTCGAGTCTCGGCGGGAACAGCTACGTCGTG ATTTTTGTGGACGACTACACCCGTTTCAAGGTGTTAAAATTCGTTAAAAG GAAGAGTGACACAACGGCCGCGCTTTTGTCTTTGATTGCAGATTATATTA CCCCGCAGGAGCTGTCGATCAAGTGCGTACGGATGGATAATGGTGGCGAG TTCGAGGGGAAATTTCAGCGCGAACTAGATCGGCGCAGCATCACGCACGA GCATACCCCGCCAAACACACCGCAGTACAACGGGGTGGCCGAACGCGCGC TTGGACCTTTACGAGAAAAGGCGATCGCCCTGATGGAGGAGTTAGACATC ATCATCAACGTGCCGCGAGAGAAGTTGTGGGCTCAGGCAATGCTTTTCGC GTGCGACGTCACCAACAAGTCAGTCACGACGTCAACGGATGGGATTAAGT GACCGTACGAACTGTGGTTTGGAAACGTTCCTACTGCTGATCATTTGCGA CCGTTTGGAGTTATGGGATACGCGCGACGAAGCGTACGCGAACATAAGAT GGCGCCGAAAGGAGAGAAATGCGTATTCATGGGAATTCCACGCAACTTCC CCACTGGCACCGTTAGCGTGCTACTCGTAAGGACAAGGCAGATCGTGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig103753:447..1196+

>mRNA_H-elongata_contig103753.315.1 ID=mRNA_H-elongata_contig103753.315.1|Name=mRNA_H-elongata_contig103753.315.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig103753:447..1196+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCACTCGAGTCTCGGCGGGAACAGCTACGTCGTGATTTTTGTGGA
CGACTACACCCGTTTCAAGGTGTTAAAATTCGTTAAAAGGAAGAGTGACA
CAACGGCCGCGCTTTTGTCTTTGATTGCAGATTATATTACCCCGCAGGAG
CTGTCGATCAAGTGCGTACGGATGGATAATGGTGGCGAGTTCGAGGGGAA
ATTTCAGCGCGAACTAGATCGGCGCAGCATCACGCACGAGCATACCCCGC
CAAACACACCGCAGTACAACGGGGTGGCCGAACGCGCGCTTGGACCTTTA
CGAGAAAAGGCGATCGCCCTGATGGAGGAGTTAGACATCATCATCAACGT
GCCGCGAGAGAAGTTGTGGGCTCAGGCAATGCTTTTCGCGTGCGACGTCA
CCAACAAGTCAGTCACGACGTCAACGGATGGGATTAAGTGAATGAAGCAC
TCGAGTCTCGGCGGGAACAGCTACGTCGTGATTTTTGTGGACGACTACAC
CCGTTTCAAGGTGTTAAAATTCGTTAAAAGGAAGAGTGACACAACGGCCG
CGCTTTTGTCTTTGATTGCAGATTATATTACCCCGCAGGAGCTGTCGATC
AAGTGCGTACGGATGGATAATGGTGGCGAGTTCGAGGGGAAATTTCAGCG
CGAACTAGATCGGCGCAGCATCACGCACGAGCATACCCCGCCAAACACAC
CGCAGTACAACGGGGTGGCCGAACGCGCGCTTGGACCTTTACGAGAAAAG
GCGATCGCCCTGATGGAGGAGTTAGACATCATCATCAACGTGCCGCGAGA
GAAGTTGTGGGCTCAGGCAATGCTTTTCGCGTGCGACGTCACCAACAAGT
CAGTCACGACGTCAACGGATGGGATTAAGTGA
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