mRNA_H-elongata_contig103753.315.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 146 bits (369), Expect = 4.920e-38 Identity = 93/238 (39.08%), Postives = 129/238 (54.20%), Query Frame = 1
Query: 4 CEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADY---ITPQELSIKCVRMDNGGEFEGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIAL-MEELDIIINVPREK-LWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFP 702
C KG+ + K+TD RA+ K R FL++GG M+ S+GGN Y +I DD TR+ + F+K KSD AA +ADY P E+ + R D GGEF+G+F R I E TPPNTP+YNGVAERALG L + A+A ++ ++ + P LWA+A+ AC N + TT G K P EL+ G P PF + +S R+ + P+ K +G+P P
Sbjct: 169 CLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFV--ARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF-LKPLVFKSRRKARSQPRARKDGTLGLPTITP 403
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE) HSP 1 Score: 147 bits (372), Expect = 4.070e-37 Identity = 91/235 (38.72%), Postives = 129/235 (54.89%), Query Frame = 1
Query: 25 KGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYITPQELSIKCV-RMDNGGEFEGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIAL-MEELDIIINVPREK-LWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSV 720
KG+ V K+T RA K R +LD+GG MK S+GGN Y +I DD++R+ + F+K KSD +ADY T C+ R D GGEF+G+F R I E TPP+TP+YNGVAERALG + + A+A ++ + + P LWA+A+ AC N + T S +G K YE++ + P PF + +S R+ K PKGEK ++G N P +S+
Sbjct: 3 KGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF-LKPAVFKSRRKAKSQPKGEKGWYLGPAHNHPRECLSM 236
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE) HSP 1 Score: 145 bits (365), Expect = 7.750e-36 Identity = 93/255 (36.47%), Postives = 133/255 (52.16%), Query Frame = 1
Query: 4 CEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYIT---PQELSIKCVRMDNGGEF-EGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIALMEELDIII----NVPREKLWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRTRQI 744
C KG +P T RA K +R F+D+ G + SLGG Y +I DDYTR+ + F+K KSD A +A+ P ++ + VR DNGGEF EG+F R + I E TP ++P+YNGVAERALG +++ A+A + + N P LWA+A+ ++C+ N + TTS K PYE+W G+ P PF + + R HK PK +KC ++G N V +L + R I
Sbjct: 708 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAI 957
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 145 bits (365), Expect = 7.810e-36 Identity = 93/255 (36.47%), Postives = 133/255 (52.16%), Query Frame = 1
Query: 4 CEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYIT---PQELSIKCVRMDNGGEF-EGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIALMEELDIII----NVPREKLWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRTRQI 744
C KG +P T RA K +R F+D+ G + SLGG Y +I DDYTR+ + F+K KSD A +A+ P ++ + VR DNGGEF EG+F R + I E TP ++P+YNGVAERALG +++ A+A + + N P LWA+A+ ++C+ N + TTS K PYE+W G+ P PF + + R HK PK +KC ++G N V +L + R I
Sbjct: 543 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAI 792
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 145 bits (365), Expect = 7.850e-36 Identity = 93/255 (36.47%), Postives = 133/255 (52.16%), Query Frame = 1
Query: 4 CEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYIT---PQELSIKCVRMDNGGEF-EGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIALMEELDIII----NVPREKLWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRTRQI 744
C KG +P T RA K +R F+D+ G + SLGG Y +I DDYTR+ + F+K KSD A +A+ P ++ + VR DNGGEF EG+F R + I E TP ++P+YNGVAERALG +++ A+A + + N P LWA+A+ ++C+ N + TTS K PYE+W G+ P PF + + R HK PK +KC ++G N V +L + R I
Sbjct: 556 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAI 805
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 144 bits (364), Expect = 1.070e-35 Identity = 93/255 (36.47%), Postives = 133/255 (52.16%), Query Frame = 1
Query: 4 CEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYIT---PQELSIKCVRMDNGGEF-EGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIALMEELDIII----NVPREKLWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRTRQI 744
C KG +P T RA K +R F+D+ G + SLGG Y +I DDYTR+ + F+K KSD A +A+ P ++ + VR DNGGEF EG+F R + I E TP ++P+YNGVAERALG +++ A+A + + N P LWA+A+ ++C+ N + TTS K PYE+W G+ P PF + + R HK PK +KC ++G N V +L + R I
Sbjct: 699 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNDKRRAI 948
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.760e-35 Identity = 92/255 (36.08%), Postives = 133/255 (52.16%), Query Frame = 1
Query: 4 CEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYIT---PQELSIKCVRMDNGGEF-EGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIALMEELDIII----NVPREKLWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRTRQI 744
C KG +P T A K +R F+D+ G ++ SLGG Y +I DDYTR+ + F+K KSD A +A+ P ++ + VR DNGGEF EG+F R + I E TP + P++NGVAERALGP+++ A+A + + N P LWA+A+ ++C+ N + TTS K PYE+W G+ P PF + + R HK PK +KC ++G N V +L + R I
Sbjct: 544 CLGCSTAKGLSKPIPNKTSTGALKKLQRVFVDLSGKVRVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHIPEHNGVAERALGPIKDAALAARIQAPTLYPGAPNYP--SLWAKAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAI 793
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE) HSP 1 Score: 143 bits (361), Expect = 2.590e-35 Identity = 94/235 (40.00%), Postives = 129/235 (54.89%), Query Frame = 1
Query: 43 VPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYIT---PQELSIKCVRMDNGGEFEGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPL---REKAIAL-MEELDIIINVPREK-LWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSVL 723
V K+T RA K R +LD+GG MK S+GGN Y +I DD++R+ + F+K KSD L +ADY T P E+ I R D GGEF+G+F R I E TPP+TP+YNGVAERALG L + A+A ++ + + P LWA+A+ AC N + T S +G K YE++ + P PF + +S R+ K PKGEK ++G N P V +L
Sbjct: 633 VQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYI--ARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF-LKPAMLKSRRKAKSQPKGEKGWYVGPAHNHPRYCVVML 864
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 143 bits (360), Expect = 3.440e-35 Identity = 91/251 (36.25%), Postives = 130/251 (51.79%), Query Frame = 1
Query: 4 CEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYITPQELS-IKCVRMDNGGEF-EGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIALMEELDIII-NVPREK-LWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRTRQI 744
C KG +P T RA K +RFF+++ G + SLGG Y +I DDYTR+ + F+K KSD A + + S + VR DNGGEF EG+F R + I E TP ++P+YNGVAERALG +++ AIA + + P + LWA+A+ ++C+ N + TTS K PYE+W G+ P PF + + R HK P +KC ++G N V +L + R I
Sbjct: 341 CLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPTAQKCFYLGPGINTNRDCVRILNEKRRAI 590
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 137 bits (346), Expect = 3.520e-35 Identity = 85/240 (35.42%), Postives = 125/240 (52.08%), Query Frame = 1
Query: 1 ACEAYFQVKGKRYAVPKTTDERASVKGRRFFLDVGGPMKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYITPQELS-IKCVRMDNGGEF-EGKFQRELDRRSITHEHTPPNTPQYNGVAERALGPLREKAIALMEELDII---INVPR-EKLWAQAMLFACDVTNKSVTTSTDGIK*PYELWFGNVPTADHLRPFGVMGYARRSVREHKMAPKGEKCVFMGIPRNFP 702
AC K R + + T R+ K R F D+GG +S+GG Y +I DD+TR + F++ KSD +A + +A S ++ VR DNGG+F G F + I E TP +PQYNGVAER LG + E A+A + ++ + +P+ +KLWA+AM +AC+ N + ++ PYE+W+G P PF Y R R K+ PKGE C ++G R+ P
Sbjct: 66 ACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQ-RPSKLLPKGESCFYVGPSRDHP 303 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103753.315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103753.315.1 >prot_H-elongata_contig103753.315.1 ID=prot_H-elongata_contig103753.315.1|Name=mRNA_H-elongata_contig103753.315.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp MKHSSLGGNSYVVIFVDDYTRFKVLKFVKRKSDTTAALLSLIADYITPQEback to top mRNA from alignment at H-elongata_contig103753:447..1196+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103753.315.1 ID=mRNA_H-elongata_contig103753.315.1|Name=mRNA_H-elongata_contig103753.315.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=750bp|location=Sequence derived from alignment at H-elongata_contig103753:447..1196+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103753:447..1196+ >mRNA_H-elongata_contig103753.315.1 ID=mRNA_H-elongata_contig103753.315.1|Name=mRNA_H-elongata_contig103753.315.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig103753:447..1196+ (Himanthalia elongata Himel1 dioecious)back to top |