mRNA_H-elongata_contig103651.303.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig103651.303.1 vs. uniprot
Match: D8LT21_ECTSI (Polyketide_cyc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT21_ECTSI) HSP 1 Score: 195 bits (496), Expect = 7.430e-57 Identity = 90/119 (75.63%), Postives = 106/119 (89.08%), Query Frame = 3 Query: 561 RQVPKVVESGNYETLTMRNGTEMIKTNLRLNVFGVKIDSYFHHTYYPSLSSMTWTLDYGKKSTLADDSVGFWHVARHPAKEKRDDWSRVYYSVELRIPSWVPGLVIGYLNSKAIREVNT 917 + VPKV E NYET T+RNGTE+IKTNL+LNVFGVK++S+F+HTY+PS SSMTWTLDY KKSTL DDSVGFWHVA HP+++K+ DWSRVYYSV+LRIPSW+PG+VIGYLN KAIRE T Sbjct: 122 KMVPKVTECKNYETETLRNGTEIIKTNLKLNVFGVKLNSFFYHTYFPSKSSMTWTLDYTKKSTL-DDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATT 239
BLAST of mRNA_H-elongata_contig103651.303.1 vs. uniprot
Match: A0A835Z7Q3_9STRA (Polyketide_cyc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Q3_9STRA) HSP 1 Score: 151 bits (382), Expect = 3.540e-40 Identity = 70/120 (58.33%), Postives = 90/120 (75.00%), Query Frame = 3 Query: 561 RQVPKVVESGNYETLTMRNGTEMIKTNLRLNVFGVKIDSYFHHTYYPSLSSMTWTLDYGKKSTLADDSVGFWHVARHPAKEKRD--DWSRVYYSVELRIPSWVPGLVIGYLNSKAIREVN 914 + VPKVV+ NYE T RNGTE IKT + +NVFG K D++ +HTY+ SLSS+TWTLDY ++STL DDSVG+W+V P K K+D +WSRVYYS LR+P WVPG+V+ +L KA+ E N Sbjct: 93 KMVPKVVKCNNYEVETFRNGTEAIKTRMVMNVFGAKFDNHIYHTYFKSLSSLTWTLDYARRSTL-DDSVGYWYVEPCPDKSKQDVQEWSRVYYSCMLRVPKWVPGIVVNFLEKKAVSEAN 211
BLAST of mRNA_H-elongata_contig103651.303.1 vs. uniprot
Match: A0A4D9CYH6_9STRA (Polyketide_cyc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYH6_9STRA) HSP 1 Score: 107 bits (266), Expect = 9.660e-23 Identity = 48/114 (42.11%), Postives = 75/114 (65.79%), Query Frame = 3 Query: 561 RQVPKVVESGNYETLTMRNGTEMIKTNLRLNVFGVKIDSYFHHTYYPSLSSMTWTLDYGKKSTLADDSVGFWHVARHPAKEKRDDWSRVYYSVELRIPSWVPGLVIGYLNSKAI 902 + VP V + GNY + +G ++T L++ G K++ + H Y PS+ ++TWTLDY ++S L +D+ G+W V + K DWSRV+YSV+LRIP+WVP LV+ LN++A+ Sbjct: 140 KMVPNVAQCGNYAKRKLMHGDVELRTRYVLSIIGFKLEYFVRHLYRPSIRTLTWTLDYDRQSDL-EDTAGYWSVVPLDKEGKVGDWSRVFYSVDLRIPAWVPQLVVNILNTQAL 252
BLAST of mRNA_H-elongata_contig103651.303.1 vs. uniprot
Match: A0A4D9DD14_9STRA (Polyketide_cyc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DD14_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.230e-22 Identity = 50/114 (43.86%), Postives = 72/114 (63.16%), Query Frame = 3 Query: 561 RQVPKVVESGNYETL-TMRNGTEMIKTNLRLNVFGVKIDSYFHHTYYPSLSSMTWTLDYGKKSTLADDSVGFWHVARHPAKEKRDDWSRVYYSVELRIPSWVPGLVIGYLNSKA 899 R VP+V NY G + I T +RL V G ++ + HH Y+P L+++ WTLDY ++S L DDSVG+WHV HP + R+ WSRVYYS+++R+ SW+P V L ++A Sbjct: 104 RMVPRVSLCENYRVQDNYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDL-DDSVGYWHVIPHPDPD-REHWSRVYYSIDMRLKSWMPSFVKNVLKNQA 215
BLAST of mRNA_H-elongata_contig103651.303.1 vs. uniprot
Match: A0A7S0I6R2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I6R2_9EUKA) HSP 1 Score: 103 bits (258), Expect = 5.640e-22 Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = 3 Query: 546 RARAYRQVPKVV----ESGNYETLTMRNGTEMIKTNLRLNVFGVKIDSYFHHTYYPSLSSMTWTLDYGKKSTLADDSVGFWHVARHPAKEKRDDWSRVYYSVELRIPSWVPGLVIGYLNSKAIREVNT 917 R A+ + PK+V E Y+T T RNGT+ I+T ++L V GV ++ + HTY P L +TWTLDY + S L D SVG+W V H + SRV+YSV+ +PSWVPG V+ + KA+ + + Sbjct: 106 RILAFPEYPKMVTGVQECSVYDTSTHRNGTQTIRTRMKLGVMGVSLEYFIEHTYAPRLGVLTWTLDYARLSDLID-SVGYWAVVPHA---RTPGASRVFYSVDAALPSWVPGFVVTAVTKKALTDATS 229
BLAST of mRNA_H-elongata_contig103651.303.1 vs. uniprot
Match: A0A7S2R0C2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0C2_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.830e-21 Identity = 48/119 (40.34%), Postives = 78/119 (65.55%), Query Frame = 3 Query: 561 RQVPKVVESGNYETLTMRNG-----TEMIKTNLRLNVFGVKIDSYFHHTYYPSLSSMTWTLDYGKKSTLADDSVGFWHVARHPAKEKRDDWSRVYYSVELRIPSWVPGLVIGYLNSKAI 902 + VPK V+S NY+ M+ +E+I T +++ + +K++ + H YYPSL+S+TWTLDY KKS DDS G+W++ HP +K W+RVYYSVE+ + W+P + ++++KA+ Sbjct: 106 KMVPKTVDSRNYDVTKMKPSKKDPLSEIIFTRMKVGLPLLKLEFFIKHLYYPSLNSLTWTLDYTKKSDF-DDSCGYWYIIPHP--DKPQSWTRVYYSVEVSMFDWIPKFALDFISAKAL 221
BLAST of mRNA_H-elongata_contig103651.303.1 vs. uniprot
Match: A0A7S2E2U9_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E2U9_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 3.990e-19 Identity = 40/82 (48.78%), Postives = 61/82 (74.39%), Query Frame = 3 Query: 663 VKIDSYFHHTYYPSLSSMTWTLDYGKKSTLADDSVGFWHVARHPAKEKRDDWSRVYYSVELRIPSWVPGLVIGYLNSKAIRE 908 +K++ + H Y+PSL+S+TWTLDY KKS DDS G+W++ HP +K +DW+RVYYSVE+ + WVP V+ +++SKA+ + Sbjct: 9 LKLEFFIKHLYFPSLNSLTWTLDYTKKSDF-DDSCGYWYIVPHP--DKPEDWTRVYYSVEVAMFDWVPKFVVDFMSSKALTD 87
BLAST of mRNA_H-elongata_contig103651.303.1 vs. uniprot
Match: A0A7S3FJR5_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FJR5_9EUKA) HSP 1 Score: 92.0 bits (227), Expect = 5.120e-19 Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 3 Query: 642 LRLNVFGVKIDSYFHHTYYPSLSSMTWTLDYGKKSTLADDSVGFWHVARHPAKEKRDDWSRVYYSVELRIPSWVPGLVIGYLNSKAIRE 908 ++L+V GVK++ + +H Y+P LS +TWTLDYG+ S L D SVG+W V HP SRVYYSV+ +PSWVPG V+ + SKA+ + Sbjct: 1 MKLSVMGVKLEYFINHMYHPKLSVLTWTLDYGRLSDLID-SVGYWCVVPHPTVAGH---SRVYYSVDAALPSWVPGFVVTAVTSKALTD 85
BLAST of mRNA_H-elongata_contig103651.303.1 vs. uniprot
Match: A0A7S4NBB6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NBB6_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.630e-18 Identity = 49/119 (41.18%), Postives = 76/119 (63.87%), Query Frame = 3 Query: 567 VPKVVESGNYETL----TMRNGTEM-IKTNLRLNVFGVKIDSYFHHTYYPSLSSMTWTLDYGKKSTLADDSVGFWHVARHPAKEKRDDWSRVYYSVELRIPSWVPGLVIGYLNSKAIRE 908 VP+ VES NYE + + +N E I T +++ +K++ + H +YPSL S+TWTLDY KKS L DDS G+W+V HP + D +RVYYSV++ + W P V+ +++S+A+ + Sbjct: 116 VPRTVESQNYEVVQHKPSKKNPLERTIYTRMKVGFPMIKLEFFVRHMHYPSLRSLTWTLDYTKKSDL-DDSCGYWYVIPHP--DDPDRRTRVYYSVQVSMFDWAPKFVVDFMSSRALTD 231
BLAST of mRNA_H-elongata_contig103651.303.1 vs. uniprot
Match: A0A7S3PX78_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX78_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.470e-17 Identity = 46/118 (38.98%), Postives = 75/118 (63.56%), Query Frame = 3 Query: 570 PKVVESGNYETLTMRNG-----TEMIKTNLRLNVFGVKIDSYFHHTYYPSLSSMTWTLDYGKKSTLADDSVGFWHVARHPAKEKRDDWSRVYYSVELRIPSWVPGLVIGYLNSKAIRE 908 PK +ES NY+ ++ +++I T L++ +K++ + H YYP L+S+TWTLDY KKS +DS GFW+V HP D+ +R+YYSVE+ + WVP V+ ++++KA+ + Sbjct: 98 PKTIESKNYKVENVKPTKKDPLSQIIFTRLKVGFPVLKLEFFIKHLYYPDLNSLTWTLDYTKKSDF-NDSCGFWYVLPHP--NDPDNRTRLYYSVEISMFDWVPKFVVDFMSTKALTD 212 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103651.303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103651.303.1 >prot_H-elongata_contig103651.303.1 ID=prot_H-elongata_contig103651.303.1|Name=mRNA_H-elongata_contig103651.303.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp MRNGTEMIKTNLRLNVFGVKIDSYFHHTYYPSLSSMTWTLDYGKKSTLADback to top mRNA from alignment at H-elongata_contig103651:84..1608- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103651.303.1 ID=mRNA_H-elongata_contig103651.303.1|Name=mRNA_H-elongata_contig103651.303.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1525bp|location=Sequence derived from alignment at H-elongata_contig103651:84..1608- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103651:84..1608- >mRNA_H-elongata_contig103651.303.1 ID=mRNA_H-elongata_contig103651.303.1|Name=mRNA_H-elongata_contig103651.303.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig103651:84..1608- (Himanthalia elongata Himel1 dioecious)back to top |