mRNA_H-elongata_contig103525.294.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig103525.294.1 vs. uniprot
Match: D8LF38_ECTSI (Divalent metal transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF38_ECTSI) HSP 1 Score: 215 bits (548), Expect = 9.090e-64 Identity = 114/166 (68.67%), Postives = 136/166 (81.93%), Query Frame = 1 Query: 1 AAGQSSTMTGTYAGQFVMEGFLRLKIPKWQRVLLTRSIALGPALAVTVYMGGDIRATDRLSAWLNVLQSLQLPFAVIPLLTFCNSRRIMGEFTIKPAMTVFVWILALFIIFVNLYIVGGFVIEQATASEDGASR-LYAISGFIAALYLALIAAVVSQDLPGWNRRA 495 AAGQSSTMTGTYAGQFVMEGFL+LKIPKWQRVL+TR IALGPALAVTV+MGGDIRATDRLSAWLNVLQSLQLPFA+IPLLTFCNS +MGEFTI +MT FVW++++ II +N+ IV GF+ ++ +SE A+ LYA + A+LYL I ++ +DL RRA Sbjct: 407 AAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLVTRIIALGPALAVTVFMGGDIRATDRLSAWLNVLQSLQLPFAIIPLLTFCNSPHVMGEFTITSSMTAFVWMVSIGIIGINISIVLGFLFDEGISSEGAAAPWLYACTAIGASLYLGFILFLMREDLQKLRRRA 572
BLAST of mRNA_H-elongata_contig103525.294.1 vs. uniprot
Match: A0A835YZC9_9STRA (Divalent metal transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC9_9STRA) HSP 1 Score: 166 bits (421), Expect = 2.130e-45 Identity = 89/158 (56.33%), Postives = 112/158 (70.89%), Query Frame = 1 Query: 1 AAGQSSTMTGTYAGQFVMEGFLRLKIPKWQRVLLTRSIALGPALAVTVYMGGDIRATDRLSAWLNVLQSLQLPFAVIPLLTFCNSRRIMGEFTIKPAMTVFVWILALFIIFVNLYIVGGFVIEQATASEDGASRLYAISGFIAALYLALIAAVVSQDL 474 AAGQSSTMTGTYAGQFVMEGFL+L I +WQRV+LTR+IALGPAL VTV M G ATDRLS WLNVLQS+QLPFA+IPL+ FC S+R+MGEFT+ +MT +W+L + +I +NLY V F + E + + LYL+ ++ +DL Sbjct: 354 AAGQSSTMTGTYAGQFVMEGFLQLSIAQWQRVMLTRTIALGPALLVTVLMHGKGTATDRLSEWLNVLQSVQLPFALIPLVHFCGSKRLMGEFTVGRSMTALLWVLTIGMIGINLYTVLDFFFDDDAPKESTTISSRIMIFTVGTLYLSFCLYLMWEDL 511
BLAST of mRNA_H-elongata_contig103525.294.1 vs. uniprot
Match: C5LKQ6_PERM5 (Natural resistance-associated macrophage protein 1, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LKQ6_PERM5) HSP 1 Score: 144 bits (364), Expect = 8.270e-40 Identity = 82/168 (48.81%), Postives = 112/168 (66.67%), Query Frame = 1 Query: 1 AAGQSSTMTGTYAGQFVMEGFLRLKIPKWQRVLLTRSIALGPALAVTVYMGGDIRATDRLSAWLNVLQSLQLPFAVIPLLTFCNSRRIMGEFTIKPAMTVFVWILALFIIFVNLYIVGGFVIEQATASEDGASRLYAISGFIAALYLALIAAVVSQDLPGWNRRAGDR 504 AAGQ+ST+TGT AGQ+VMEGF+R KIP W RVL+TR+IALGPALA + + G+IRA + ++AWLN+LQS+QLPFA++P+L F SR ++G F I T +WILA +I VN Y+V + + ++AI +A LYL L + V +DL G R+ R Sbjct: 66 AAGQASTLTGTLAGQYVMEGFMRWKIPMWFRVLITRTIALGPALAFAI-LQGEIRAMNGVNAWLNILQSIQLPFALLPVLHFSMSREVLGRFVIGRFWTAVMWILACLVIGVNFYLV-----IETIIPLNWPWYVWAILAIVACLYLWLCISCVKEDLMGAARKVFGR 227
BLAST of mRNA_H-elongata_contig103525.294.1 vs. uniprot
Match: C5LEW5_PERM5 (Natural resistance-associated macrophage protein, putative n=2 Tax=Perkinsus marinus TaxID=31276 RepID=C5LEW5_PERM5) HSP 1 Score: 143 bits (360), Expect = 5.320e-37 Identity = 81/168 (48.21%), Postives = 111/168 (66.07%), Query Frame = 1 Query: 1 AAGQSSTMTGTYAGQFVMEGFLRLKIPKWQRVLLTRSIALGPALAVTVYMGGDIRATDRLSAWLNVLQSLQLPFAVIPLLTFCNSRRIMGEFTIKPAMTVFVWILALFIIFVNLYIVGGFVIEQATASEDGASRLYAISGFIAALYLALIAAVVSQDLPGWNRRAGDR 504 AAGQ+ST+TGT AGQ+VMEGF+R KIP W RVL+TR+IALGPALA + + G+IRA + ++AWLN+LQS+QLPFA++P+L F SR ++G F I T +WILA +I VN Y+V + + ++ I +A LYL L + V +DL G R+ R Sbjct: 389 AAGQASTLTGTLAGQYVMEGFMRWKIPMWFRVLITRTIALGPALAFAI-LQGEIRAMNGVNAWLNILQSIQLPFALLPVLHFSMSREVLGRFVIGRFWTAVMWILACLVIGVNFYLV-----IETIIPLNWPWYVWVILAIVACLYLWLCISCVKEDLMGAARKVFGR 550
BLAST of mRNA_H-elongata_contig103525.294.1 vs. uniprot
Match: A0A7J6M0I1_PERCH (Uncharacterized protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6M0I1_PERCH) HSP 1 Score: 137 bits (345), Expect = 7.370e-35 Identity = 77/158 (48.73%), Postives = 105/158 (66.46%), Query Frame = 1 Query: 1 AAGQSSTMTGTYAGQFVMEGFLRLKIPKWQRVLLTRSIALGPALAVTVYMGGDIRATDRLSAWLNVLQSLQLPFAVIPLLTFCNSRRIMGEFTIKPAMTVFVWILALFIIFVNLYIVGGFVIEQATASEDGASRLYAISGFIAALYLALIAAVVSQDL 474 AAGQ+ST+TGT AGQ+VMEGF++ +IP W RVL+TRSIALGPALA + + G+I A + ++AWLN+LQS+QLPFA++P+L F SR +MG F I T +W+LA +I VN Y+ I + +AI G +A LY+ L A V +L Sbjct: 386 AAGQASTLTGTLAGQYVMEGFMQWQIPMWVRVLITRSIALGPALAFAI-LQGEITAMNGVNAWLNILQSIQLPFALLPVLHFSMSREVMGRFAIGHVWTSIMWMLACLVIGVNFYL-----IIETLVPLGWPWYAWAIIGIVAFLYIRLCIACVKSEL 537
BLAST of mRNA_H-elongata_contig103525.294.1 vs. uniprot
Match: C5KQJ6_PERM5 (Natural resistance-associated macrophage protein 1, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KQJ6_PERM5) HSP 1 Score: 129 bits (323), Expect = 2.510e-34 Identity = 70/158 (44.30%), Postives = 105/158 (66.46%), Query Frame = 1 Query: 1 AAGQSSTMTGTYAGQFVMEGFLRLKIPKWQRVLLTRSIALGPALAVTVYMGGDIRATDRLSAWLNVLQSLQLPFAVIPLLTFCNSRRIMGEFTIKPAMTVFVWILALFIIFVNLYIVGGFVIEQATASEDGASRLYAISGFIAALYLALIAAVVSQDL 474 AAGQ+ST+TGT AGQ+VMEGF+ ++I W RVLLTR+IALGPALA+ + + ++ + ++AWLN+LQS+QLPFA++PLL + S+++MG F + + +W+LAL I+ +N+Y+ I D +AI G + LY++L V DL Sbjct: 11 AAGQASTLTGTMAGQYVMEGFMHIRISMWVRVLLTRTIALGPALAIAL-VESEVSGMNGINAWLNILQSIQLPFALLPLLHYAMSKKVMGTFALNRWWSAGLWLLALIILAINVYL-----IITTLVPLDWPWYAWAIIGVVFYLYVSLCFYCVEDDL 162
BLAST of mRNA_H-elongata_contig103525.294.1 vs. uniprot
Match: A0A7J6MGJ3_PERCH (Uncharacterized protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MGJ3_PERCH) HSP 1 Score: 135 bits (340), Expect = 6.920e-34 Identity = 74/158 (46.84%), Postives = 107/158 (67.72%), Query Frame = 1 Query: 1 AAGQSSTMTGTYAGQFVMEGFLRLKIPKWQRVLLTRSIALGPALAVTVYMGGDIRATDRLSAWLNVLQSLQLPFAVIPLLTFCNSRRIMGEFTIKPAMTVFVWILALFIIFVNLYIVGGFVIEQATASEDGASRLYAISGFIAALYLALIAAVVSQDL 474 AAGQ+ST+TGT AGQ+VMEGF+ +KI W RVLLTR+IALGPALA+ + + I + ++AWLN+LQS+QLPFA++PLL + S+++MG+F + + F+W+LAL I+ +N+Y+ I D +AI G +A LY +L V +DL Sbjct: 406 AAGQASTLTGTMAGQYVMEGFMHIKISMWVRVLLTRTIALGPALAIAL-LESAISGMNGVNAWLNILQSIQLPFALLPLLHYSMSKKVMGDFALNRWWSAFIWMLALIILAINVYL-----IITTLVPLDWPWYAWAIIGAVAYLYASLCFYCVKEDL 557
BLAST of mRNA_H-elongata_contig103525.294.1 vs. uniprot
Match: A0A813AXD8_9DINO (Nramp1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AXD8_9DINO) HSP 1 Score: 135 bits (340), Expect = 1.090e-33 Identity = 75/158 (47.47%), Postives = 104/158 (65.82%), Query Frame = 1 Query: 1 AAGQSSTMTGTYAGQFVMEGFLRLKIPKWQRVLLTRSIALGPALAVTVYMGGDIRATDRLSAWLNVLQSLQLPFAVIPLLTFCNSRRIMGEFTIKPAMTVFVWILALFIIFVNLYIVGGFVIEQATASEDGASRLYAISGFIAALYLALIAAVVSQDL 474 AAGQ+STMTGT AGQ VMEGFL +IP W R L+TR I+LGPA+AV V +R++ W+NVLQS+QLPFA++P+L F + + +MGEF +K VF W+LA+ +I VN+Y+V A + G+ L A++ A+Y +LI +S DL Sbjct: 2142 AAGQASTMTGTIAGQCVMEGFLDWRIPLWLRTLVTRLISLGPAVAVAVLTSSSPNLNNRVNQWINVLQSVQLPFALVPVLHFNSDKALMGEFVLKKHFQVFCWLLAMLVISVNVYLV-------AQNMQGGSLLLQALTMLFFAIYGSLILFTMSADL 2292
BLAST of mRNA_H-elongata_contig103525.294.1 vs. uniprot
Match: A0A1Q9C8G7_SYMMI (Metal transporter nramp1-like n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9C8G7_SYMMI) HSP 1 Score: 135 bits (340), Expect = 1.110e-33 Identity = 75/158 (47.47%), Postives = 104/158 (65.82%), Query Frame = 1 Query: 1 AAGQSSTMTGTYAGQFVMEGFLRLKIPKWQRVLLTRSIALGPALAVTVYMGGDIRATDRLSAWLNVLQSLQLPFAVIPLLTFCNSRRIMGEFTIKPAMTVFVWILALFIIFVNLYIVGGFVIEQATASEDGASRLYAISGFIAALYLALIAAVVSQDL 474 AAGQ+STMTGT AGQ VMEGFL +IP W R L+TR I+LGPA+AV V +R++ W+NVLQS+QLPFA++P+L F + + +MGEF +K VF W+LA+ +I VN+Y+V A + G+ L A++ A+Y +LI +S DL Sbjct: 3581 AAGQASTMTGTIAGQCVMEGFLDWRIPLWLRTLVTRLISLGPAVAVAVLTSSSPNLNNRVNQWINVLQSVQLPFALVPVLHFNSDKALMGEFVLKKHFQVFCWLLAMLVISVNVYLV-------AQNMQGGSLLLQALTMLFFAIYGSLILFTMSADL 3731
BLAST of mRNA_H-elongata_contig103525.294.1 vs. uniprot
Match: A0A484KTZ9_9ASTE (Uncharacterized protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484KTZ9_9ASTE) HSP 1 Score: 132 bits (332), Expect = 3.280e-33 Identity = 76/166 (45.78%), Postives = 109/166 (65.66%), Query Frame = 1 Query: 1 AAGQSSTMTGTYAGQFVMEGFLRLKIPKWQRVLLTRSIALGPALAVTVYMGGDIRATDRLSAWLNVLQSLQLPFAVIPLLTFCNSRRIMGEFTIKPAMTVFVWILALFIIFVNLYIVGGFVIEQATASEDGASRLYAISGFIAALYLALIAAVVSQDLP-GWNRRA 495 AAGQSST+TGTYAGQF+M GFL +++ KWQR L+TRS A+ P L V + D L+ WLNVLQ++Q+PFA+IPLL + ++MG FTI P + V W++A F+I +N Y++ F + +A G + AI F AA Y+A I ++S+++P N+RA Sbjct: 351 AAGQSSTITGTYAGQFIMGGFLHMQLKKWQRALITRSCAIIPTLIVALAFDTSEDLLDVLNEWLNVLQAIQIPFALIPLLCLVSKEQVMGVFTIGPIVKVISWLVATFLIAINGYLMVDFFLSEAR----GVAFTSAIFTFTAA-YVAFIIYLISREIPFSKNKRA 511 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103525.294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103525.294.1 >prot_H-elongata_contig103525.294.1 ID=prot_H-elongata_contig103525.294.1|Name=mRNA_H-elongata_contig103525.294.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp MTGTYAGQFVMEGFLRLKIPKWQRVLLTRSIALGPALAVTVYMGGDIRATback to top mRNA from alignment at H-elongata_contig103525:388..1194- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103525.294.1 ID=mRNA_H-elongata_contig103525.294.1|Name=mRNA_H-elongata_contig103525.294.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=807bp|location=Sequence derived from alignment at H-elongata_contig103525:388..1194- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103525:388..1194- >mRNA_H-elongata_contig103525.294.1 ID=mRNA_H-elongata_contig103525.294.1|Name=mRNA_H-elongata_contig103525.294.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig103525:388..1194- (Himanthalia elongata Himel1 dioecious)back to top |