mRNA_H-elongata_contig103521.293.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103521.293.1
Unique NamemRNA_H-elongata_contig103521.293.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103521.293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103521contigH-elongata_contig103521:190..1123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size412
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929570.419859-CDS-H-elongata_contig103521:191..3461622929570.419859-CDS-H-elongata_contig103521:191..346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103521 192..346 -
1691679074.856553-CDS-H-elongata_contig103521:191..3461691679074.856553-CDS-H-elongata_contig103521:191..346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103521 192..346 -
1622929570.4376059-CDS-H-elongata_contig103521:870..11231622929570.4376059-CDS-H-elongata_contig103521:870..1123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103521 871..1123 -
1691679074.8668487-CDS-H-elongata_contig103521:870..11231691679074.8668487-CDS-H-elongata_contig103521:870..1123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103521 871..1123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103521.293.1prot_H-elongata_contig103521.293.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103521 192..1123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103521.293.1

>prot_H-elongata_contig103521.293.1 ID=prot_H-elongata_contig103521.293.1|Name=mRNA_H-elongata_contig103521.293.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
GGYSSRPSYSLQGTSTVGFFSQHERSVMLDLKSKSCVDRRCSMQPSYGIP
GSRMVEISVGVRDIKRESFLGDGCFANQERIGLTEAGAVAEQAITKGDDK
YQRVSVGSLTRKKDMAQRKPNNHEGTATFIKHVEIG
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mRNA from alignment at H-elongata_contig103521:190..1123-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103521.293.1 ID=mRNA_H-elongata_contig103521.293.1|Name=mRNA_H-elongata_contig103521.293.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=934bp|location=Sequence derived from alignment at H-elongata_contig103521:190..1123- (Himanthalia elongata Himel1 dioecious)
GGCGGGTATTCCTCTCGTCCCAGCTACAGCCTACAGGGAACTAGCACAGT
GGGGTTTTTCTCCCAGCACGAGAGGTCAGTAATGTTAGACCTGAAAAGTA
AGTCATGCGTGGATAGGAGGTGCTCCATGCAGCCCAGCTACGGTATTCCA
GGCAGCAGGATGGTCGAGATCTCGGTGGGAGTCAGAGACATCAAAAGAGA
ATCGTTCTTGGGCGATGGCTGCTTCGCAAATCAAGAGAGGATCGGATTAA
CAGGCAAGACAAATATAGGAAGTTTGTTCGAGTTATAATAAAAGAATGAG
ACGGGTTTTTAGGCAGCTTGCTACCAGAATATGGAAGTCTGACGGGGGAA
AACCGACACGAGGGGGTGCAGGTGCTCCTTGCATGATGTAATAATTAAAT
GGTCGTTGATTCAATATTAGATCAGAAAAATCACTCTGAACAGGTCGTTA
GGAGATTCAGCGTTGGCTTTCTAGTGATATTGGGTATGGTAGTTTGTTCT
TTGTCTACTCGTGGTAAAAAACACCGTGGTAAGGTTTAATCGCGTATAAT
TTTTAGGAAAATACAGACACTACGATTGCCATGACTTATGATATGTTATA
ATTTATTAGTTCAATGGTTTTAAAAATTTCAGCTTCCTTGCAGGATAAGC
GCTACATAATCGCCGCACGTCAGGGAGGATCGTGGGTGTGATATAATGAA
GTTTTGTGCAAAGTTAGTTTTCATCGCCTTTGCCCCACTTTGAGAAGATC
TGTATCTCCGCACCTTATTGCACGCAGAGGCTGGAGCGGTGGCAGAGCAA
GCTATTACAAAGGGGGATGATAAATATCAGAGGGTGAGCGTTGGCTCGCT
GACACGGAAGAAAGATATGGCGCAGAGAAAGCCCAACAACCATGAGGGTA
CTGCAACGTTTATCAAGCACGTTGAAATTGGTTT
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Coding sequence (CDS) from alignment at H-elongata_contig103521:190..1123-

>mRNA_H-elongata_contig103521.293.1 ID=mRNA_H-elongata_contig103521.293.1|Name=mRNA_H-elongata_contig103521.293.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig103521:190..1123- (Himanthalia elongata Himel1 dioecious)
GGCGGGTATTCCTCTCGTCCCAGCTACAGCCTACAGGGAACTAGCACAGT
GGGGTTTTTCTCCCAGCACGAGAGGTCAGTAATGTTAGACCTGAAAAGTA
AGTCATGCGTGGATAGGAGGTGCTCCATGCAGCCCAGCTACGGTATTCCA
GGCAGCAGGATGGTCGAGATCTCGGTGGGAGTCAGAGACATCAAAAGAGA
ATCGTTCTTGGGCGATGGCTGCTTCGCAAATCAAGAGAGGATCGGATTAA
CAGGGCGGGTATTCCTCTCGTCCCAGCTACAGCCTACAGGGAACTAGCAC
AGTGGGGTTTTTCTCCCAGCACGAGAGGTCAGTAATGTTAGACCTGAAAA
GTAAGTCATGCGTGGATAGGAGGTGCTCCATGCAGCCCAGCTACGGTATT
CCAGGCAGCAGGATGGTCGAGATCTCGGTGGGAGTCAGAGACATCAAAAG
AGAATCGTTCTTGGGCGATGGCTGCTTCGCAAATCAAGAGAGGATCGGAT
TAACAGAGGCTGGAGCGGTGGCAGAGCAAGCTATTACAAAGGGGGATGAT
AAATATCAGAGGGTGAGCGTTGGCTCGCTGACACGGAAGAAAGATATGGC
GCAGAGAAAGCCCAACAACCATGAGGGTACTGCAACGTTTATCAAGCACG
TTGAAATTGGTAGGCTGGAGCGGTGGCAGAGCAAGCTATTACAAAGGGGG
ATGATAAATATCAGAGGGTGAGCGTTGGCTCGCTGACACGGAAGAAAGAT
ATGGCGCAGAGAAAGCCCAACAACCATGAGGGTACTGCAACGTTTATCAA
GCACGTTGAAATTGGT
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