mRNA_H-elongata_contig103485.289.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig103485.289.1 vs. uniprot
Match: D7FHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD0_ECTSI) HSP 1 Score: 110 bits (276), Expect = 1.830e-27 Identity = 50/114 (43.86%), Postives = 78/114 (68.42%), Query Frame = 1 Query: 1 PVEWNIQDEICDHFALHCTQSMVLLNEEDV-DKADALECAAVADVLVVSEGGFSVASSFLSPHVKILTDKWAPDEMEMKISLDPASTVAGISQSEHKLIQKTLWEYSECSALAS 339
P+ W++ E CD LHC+Q +VLLNE + + +LEC A +D+ + SE FS A + LS HVK+LTD+W DE EM ++L+PA+T+AG+ S+ +L++ + +Y ECSA ++
Sbjct: 160 PLYWDVAGETCDDLGLHCSQHVVLLNERTAPESSQSLECIAASDLFIASESKFSRAGAVLSDHVKVLTDRWEMDEEEMMVALNPATTIAGMPDSQRQLLRTLVADYHECSASSA 273
BLAST of mRNA_H-elongata_contig103485.289.1 vs. uniprot
Match: A0A6H5L6Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y9_9PHAE) HSP 1 Score: 110 bits (274), Expect = 2.150e-26 Identity = 49/114 (42.98%), Postives = 78/114 (68.42%), Query Frame = 1 Query: 1 PVEWNIQDEICDHFALHCTQSMVLLNEEDV-DKADALECAAVADVLVVSEGGFSVASSFLSPHVKILTDKWAPDEMEMKISLDPASTVAGISQSEHKLIQKTLWEYSECSALAS 339
P+ W++ E CD LHCTQ +VLLNE + + +L+C A +D+ + SE FS A + LS HVK+LTD+W DE EM ++L+PA+T+AG+ S+ +L++ + +Y ECS+ ++
Sbjct: 265 PLYWDVAGETCDDLGLHCTQHVVLLNERTAPESSQSLDCIAASDLFIASESKFSRAGAVLSDHVKVLTDRWEMDEEEMMVALNPATTIAGMPDSQRQLLRTLVADYHECSSSST 378 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103485.289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103485.289.1 >prot_H-elongata_contig103485.289.1 ID=prot_H-elongata_contig103485.289.1|Name=mRNA_H-elongata_contig103485.289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp PVEWNIQDEICDHFALHCTQSMVLLNEEDVDKADALECAAVADVLVVSEGback to top mRNA from alignment at H-elongata_contig103485:762..2027- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103485.289.1 ID=mRNA_H-elongata_contig103485.289.1|Name=mRNA_H-elongata_contig103485.289.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1266bp|location=Sequence derived from alignment at H-elongata_contig103485:762..2027- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103485:762..2027- >mRNA_H-elongata_contig103485.289.1 ID=mRNA_H-elongata_contig103485.289.1|Name=mRNA_H-elongata_contig103485.289.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig103485:762..2027- (Himanthalia elongata Himel1 dioecious)back to top |