mRNA_H-elongata_contig10338.282.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 166 bits (420), Expect = 2.320e-45 Identity = 93/235 (39.57%), Postives = 132/235 (56.17%), Query Frame = 1 Query: 7 MTSNRWTSCSNDTYHSFTASFIDDEFDMHELAMYCKKSSGKTAGTDLADNVKGLIDSYDMARRVTAAVTDCEPSMISNGCLEEL------------------------------------------------------CGILKVPSLQVVQSVETRWNSTFSSVERTRQLRDAIQLHDRLDNIAPLLTDDDWEVLKLI*PIIRPFIKARRELEGAKYVTGSLVVPYAHDLRRGLE 549 +T++ WTS SN++Y S T ++ID + +H L++ C K +G T G DLA + +I+ + + RVTA VTDCEPSM+ G L E+ GILK+ L V+Q VETRW S+++ +ER L AI+LH+ DNIAP+L++ DWEVL+LI PI+RPF++A+++LEGAKYVTGS+ VP +LR GLE Sbjct: 79 ITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLGALAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLE 313
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 117 bits (292), Expect = 3.630e-27 Identity = 56/101 (55.45%), Postives = 77/101 (76.24%), Query Frame = 1 Query: 247 LEELCGILKVPSLQVVQSVETRWNSTFSSVERTRQLRDAIQLHDRLDNIAPLLTDDDWEVLKLI*PIIRPFIKARRELEGAKYVTGSLVVPYAHDLRRGLE 549 L +LCGIL++ L V+Q VETRW ST++ V R L AI+LH+ +D + PLL+D DWEVL+LI PI+RPF+KA+++LEGA+YVTGS+ + +LR GLE Sbjct: 177 LVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLE 277
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.230e-16 Identity = 51/144 (35.42%), Postives = 74/144 (51.39%), Query Frame = 1 Query: 7 MTSNRWTSCSNDTYHSFTASFIDDEFDMHELAMYCKKSSGKTAGTDLADNVKGLIDSYDMARRVTAAVTDCEPSMISNG-CLEELCGILKV---------------------PSLQVVQSVETRWNSTFSSVERTRQLRDAIQL 372 +TS+ WTS SNDTY FT ++I FD+ L + CKK G+T G DL + VK +I + R A TDCEPSM+ G LEE G+ + +L + + V TR+N + + +R Q+RD +Q+ Sbjct: 52 VTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQV 195
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 8.220e-13 Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 1 Query: 7 MTSNRWTSCSNDTYHSFTASFIDDEFDMHELAMYCKKSSGKTAGTDLADNVKGLIDSYDMARRVTAAVTDCEPSMISNG-CLEELCGILKV---------------------PSLQVVQSVETRWNSTFSSVERTRQLRDAIQL 372 +TS+ WT SNDTY SFT ++I FD+ L + CKK +TAG DL + VK +I + R A TDCE SM+ G LEE G+ + +L + + V TR+ + + +R Q+ D +Q+ Sbjct: 8 LTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDIVQV 151
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: UPI001F9F4A45 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F9F4A45) HSP 1 Score: 71.2 bits (173), Expect = 2.810e-11 Identity = 42/122 (34.43%), Postives = 69/122 (56.56%), Query Frame = 1 Query: 196 VTAAVTDCEPSMI----SNGCLEELCGILK---VPSLQVVQSVETRWNSTFSSVERTRQLRDAIQLHDRLDNIAPLLTDDDWEVLKLI*PIIRPFIKARRELEGAKYVTGSLVVPYAHDLRR 540 VTAA+T C+ SN +EL I K +L++ Q TRWNSTF +ER Q+++++ ++ +N PLLT ++W ++K + ++RPF + +EL A V+ S V+P L + Sbjct: 7 VTAAITKCKKIATHFHHSNSAQDELANIQKRLLQKTLKIKQECTTRWNSTFHMLERILQVKESVCIYASTNNKIPLLTSEEWMIIKKLSGVLRPFDELTKELSSAD-VSISSVIPLIATLEK 127
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: A0A8J5CJE7_CHIOP (Zinc finger BED domain-containing protein 1 n=2 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J5CJE7_CHIOP) HSP 1 Score: 67.0 bits (162), Expect = 1.030e-9 Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = 1 Query: 181 DMARRVTAAVTDCEPSMISNGCL---EELCGILKVPSLQVVQSVETRWNSTFSSVERTRQLRDAIQ---LHDRLDNIAPLLTDDDWEVLKLI*PIIRPFIKARRELEGAKYVTGSLVVPYAHDLR 537 D+ +V VT S+ S+ L + G+L VP L+++Q+V+TRWNSTF S++R +L + L P+LT ++ V + ++ PF KA +E+ G KYVT S+V+P + LR Sbjct: 83 DVIEKVKQIVTYFRRSISSSDALRAAQRQKGVL-VP-LELIQAVQTRWNSTFYSLQRFAELAGCVSQVLLSKDHRTAPPMLTSEELAVANYLVAVLGPFDKATKEISGEKYVTASIVLPMVNCLR 205
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 1.810e-9 Identity = 43/137 (31.39%), Postives = 64/137 (46.72%), Query Frame = 1 Query: 28 SCSNDTYHSFTASFIDDEFDMHELAMYCKKSSGKTAGTDLADNVKGLIDSYDMARRVTAAVTDCEPSMISNG-CLEELCGILKV---------------------PSLQVVQSVETRWNSTFSSVERTRQLRDAIQL 372 S SNDTY +FT ++I FD+ L + KK G+T G DL + VK +I + R A TDCEP M+ G LEE G+ + +L + + V TR+ + + R Q+ D +Q+ Sbjct: 3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQV 139
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: UPI001896C2EA (zinc finger BED domain-containing protein 4-like n=2 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI001896C2EA) HSP 1 Score: 66.2 bits (160), Expect = 2.040e-9 Identity = 40/148 (27.03%), Postives = 70/148 (47.30%), Query Frame = 1 Query: 91 HELAMYCKKSSGKTAGTD-LADNVKGLIDSYDMARRVTAAVTDCEPSMISNGCLEELCGILKVPSLQVVQSVETRWNSTFSSVERTRQLRDAIQLH-DRLDNIAPLLTDDDWEVLKLI*PIIRPFIKARRELEGAKYVTGSLVVPYAH 528 H L + K + +TAG + + ++ Y + + A + DC+ M ++ L+++Q VETRWNS + R QL++A+ L + P LT +W+ + + + P A ++L G KY T S VVP+ + Sbjct: 162 HTLQLAIKDAKEETAGVPAILKKCRAIVGHYKHSAQAAARLPDCQRRM-------------ELSVLELIQDVETRWNSEHDMLSRLVQLKEAVCLELATSETTVPNLTPQEWKAVAGLIKALEPIASATKDLSGQKYATLSSVVPFLY 296
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: A0A7S3B5R8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B5R8_9EUKA) HSP 1 Score: 64.3 bits (155), Expect = 8.600e-9 Identity = 44/160 (27.50%), Postives = 74/160 (46.25%), Query Frame = 1 Query: 91 HELAMYCKKSSGKTAGTDLADNVKGLIDSYDMARRVTAAVTDCEPSMISNGCLEELCGILKVPSLQVVQSVETRWNSTFSSVERTRQLRDAIQLHDRLDNIAPLLTD---------DDWEVLKLI*PIIRPFIKARRELEGAKYVTGSLVVPYAHDLRRG 543 H L + KK +G + KG++ + R T+ + D +++ CG+ P Q +Q V TRW S++ V+ R+ + A+Q++D + D DW + + ++ P +A + LEG KYVT SLV+PY + L G Sbjct: 16 HTLELSVKKYTGADGIKETFSRDKGIVGYF---HRSTSGIQDLTT-------IQKACGL---PEKQPIQDVVTRWFSSYGMVDWFREQQQAVQMYDVKHGAEAVKNDAYKDNRLQHKDWAINEQSVAVLAPVAQATKLLEGTKYVTISLVLPYTYRLIEG 162
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Match: UPI0018993B21 (zinc finger BED domain-containing protein 4-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI0018993B21) HSP 1 Score: 63.9 bits (154), Expect = 1.210e-8 Identity = 39/148 (26.35%), Postives = 69/148 (46.62%), Query Frame = 1 Query: 91 HELAMYCKKSSGKTAGTD-LADNVKGLIDSYDMARRVTAAVTDCEPSMISNGCLEELCGILKVPSLQVVQSVETRWNSTFSSVERTRQLRDAIQLH-DRLDNIAPLLTDDDWEVLKLI*PIIRPFIKARRELEGAKYVTGSLVVPYAH 528 H L + K + +TAG + + ++ Y + + A + DC+ M ++ L+++Q VETRWNS + R QL++A+ L + P LT +W+ + + + P A ++L G KY T VVP+ + Sbjct: 162 HTLQLAIKDAKEETAGVPAILKKCRAIVGHYKHSAQAAARLQDCQRRM-------------ELSVLELIQDVETRWNSEHDMLSRLVQLKEAVCLELATSETTVPNLTPQEWKAVAGLVKALEPIASATKDLSGQKYATLLSVVPFLY 296 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10338.282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10338.282.1 >prot_H-elongata_contig10338.282.1 ID=prot_H-elongata_contig10338.282.1|Name=mRNA_H-elongata_contig10338.282.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp MTSNRWTSCSNDTYHSFTASFIDDEFDMHELAMYCKKSSGKTAGTDLADNback to top mRNA from alignment at H-elongata_contig10338:6645..7364- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10338.282.1 ID=mRNA_H-elongata_contig10338.282.1|Name=mRNA_H-elongata_contig10338.282.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=720bp|location=Sequence derived from alignment at H-elongata_contig10338:6645..7364- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10338:6645..7364- >mRNA_H-elongata_contig10338.282.1 ID=mRNA_H-elongata_contig10338.282.1|Name=mRNA_H-elongata_contig10338.282.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig10338:6645..7364- (Himanthalia elongata Himel1 dioecious)back to top |