mRNA_H-elongata_contig103369.280.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig103369.280.1 vs. uniprot
Match: D8LJH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH3_ECTSI) HSP 1 Score: 174 bits (442), Expect = 4.740e-47 Identity = 103/205 (50.24%), Postives = 132/205 (64.39%), Query Frame = 1 Query: 1 ADVTMATRMSVPDFAELLRDQNVTEFVRITPLTAHIEYGHLVALGSEGFCLCKCLRLLLDGLCCRHGLKAMHSKEVS-FNGACIAPRWRDGAAAWTMAALAAKPARLSATGTEG-------SGKLPPVDTDDASPVVFSHSEPTVRFHVFGNFCTLGKELASMAVYRITTIEGTQRLMDNIKKYAIQVIETEERSKKNAPLNRIF 591 A V+M +R SVP FAELLRDQNV VRITP++ E GHLVALG +GF LC CLR L+ GL C H +KA+ + S FNGA I+PRWRD WTMAALAAKPA+LS TG G ++PPVDT SP+V SHS + + + N LGKEL M + ++ QRLM+++K +A Q IE E+RS ++ +R+F Sbjct: 253 ACVSMVSRTSVPHFAELLRDQNVHTVVRITPMSTASECGHLVALGPDGFFLCTCLRQLVYGLLCPHAIKALWYQRASQFNGATISPRWRDSETPWTMAALAAKPAKLS-TGAAGLXXXXXXXXQMPPVDT---SPIVSSHSGLNLSAYAYANGVALGKELGGM-FKEVPSVASIQRLMESMKLHAKQQIEVEKRSLRDESTSRVF 452
BLAST of mRNA_H-elongata_contig103369.280.1 vs. uniprot
Match: A0A6H5K1S8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S8_9PHAE) HSP 1 Score: 175 bits (443), Expect = 7.200e-47 Identity = 101/214 (47.20%), Postives = 136/214 (63.55%), Query Frame = 1 Query: 4 DVTMATRMSVPDFAELLRDQNVTEFVRIT-PLTAHIEYGHLVALGSEGFCLCKCLRLLLDGLCCRHGLKAMHSKEVSFNGACIAPRWRDGAAAWTMAALAAKPARLSATGTEGSGKLPPVDTDDASPVVFSHSEPTVRFHVFGNFCTLGKELASMAVYRITTIEGTQRLMDNIKKYAIQVIETEERSKKNAPLNRIFA-----SRPAADSPGGG 627 DVT+ATR S+ FAELL+DQ + VR++ +Y LVALG +GF LC CLR+L+DGL CRH L+AM ++ F GACIAPRWRDG WTM LAAKPA ++AT T+ G++PP D ++ FSHS+ TVR + + C GKELA++ I + G R++DN+ +A Q+++ E RS+ NA R+F S PA D P GG Sbjct: 280 DVTLATRTSIEFFAELLKDQVLDRLVRVSRSFGDQTKYCQLVALGPDGFFLCTCLRILVDGLGCRHALRAMRGTDLGFTGACIAPRWRDGIMPWTMGRLAAKPA-VAAT-TDAGGEMPPPPADASAFSRFSHSKSTVRASAWASCCAWGKELATITA-PIDNVAGITRILDNLTIHARQLVDVELRSQHNASTTRVFKGVVTRSTPAPDPPEGG 490
BLAST of mRNA_H-elongata_contig103369.280.1 vs. uniprot
Match: A0A6H5KFX3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX3_9PHAE) HSP 1 Score: 167 bits (422), Expect = 8.050e-44 Identity = 104/215 (48.37%), Postives = 127/215 (59.07%), Query Frame = 1 Query: 4 DVTMATRMSVPDFAELLRDQNVTEFVRITPLTAH--IEYGHLVALGSEGFCLCKCLRLLLDGLCCRHGLKAMHSKEVSFNGACIAPRWRDGAAAWTMAALAAKPARLSATGTEGSGKLPPVDTDDASPVVFSHSEPTVRFHVFGNFCTLGKELASMAVYRITTIEGTQRLMDNIKKYAIQVIETEERSKKNAPLNRIFA---SRP--AADSPGGG 627 D T TR SV FAELL DQ + + VRIT + YGHLVALG +GF LC CLRLL+ GL CRHGL+A+ + FNG CIA RWRD WTM LAAK A + T G +PP TD P VFSHS+PT R + + GKELAS+ + + QR+++N+ YA Q+IE E RS+ A NRIF +RP A D P GG Sbjct: 355 DGTWTTRTSVKFFAELLEDQVLDKLVRITRSFSDGGPNYGHLVALGPDGFVLCTCLRLLVYGLGCRHGLRAVRDTDFGFNGGCIASRWRDSTQPWTMEHLAAKRAAPANTAAGVPGDMPPAPTD---PGVFSHSKPTARVSNWASCVAFGKELASLMT-DVDAVAPCQRVLNNLTNYAKQLIEVEARSQHEATTNRIFTGVVARPVTATDPPEGG 565
BLAST of mRNA_H-elongata_contig103369.280.1 vs. uniprot
Match: D7FVI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI8_ECTSI) HSP 1 Score: 164 bits (414), Expect = 1.130e-43 Identity = 95/182 (52.20%), Postives = 118/182 (64.84%), Query Frame = 1 Query: 1 ADVTMATRMSVPDFAELLRDQNVTEFVRITPLTAHIEYGHLVALGSEGFCLCKCLRLLLDGLCCRHGLKAMHSKEVS-FNGACIAPRWRDGAAAWTMAALAAKPARLSATGTEG-------SGKLPPVDTDDASPVVFSHSEPTVRFHVFGNFCTLGKELASMAVYRITTIEGTQRLMDNIK 522 A V+M +R SVP FAELLRDQNV VRITP++ E GHLVALG +GF LC CLR L+ GL C H +KA+ + S FNGA I+PRWRD WTMAALAAKPA+LS TG G ++PPVDT SP+V SHS P + + + N LGKEL M + ++ QRLM+++K Sbjct: 253 AGVSMVSRTSVPHFAELLRDQNVHTVVRITPMSTASECGHLVALGPDGFFLCTCLRQLVYGLLCPHAIKALWYQRASQFNGATISPRWRDSETPWTMAALAAKPAKLS-TGAAGLXXXXXXXXQMPPVDT---SPIVSSHSGPNLSAYAYANGVALGKELGGM-FKEVPSVASIQRLMESMK 429
BLAST of mRNA_H-elongata_contig103369.280.1 vs. uniprot
Match: A0A6H5KKK0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK0_9PHAE) HSP 1 Score: 160 bits (405), Expect = 3.430e-43 Identity = 101/215 (46.98%), Postives = 125/215 (58.14%), Query Frame = 1 Query: 4 DVTMATRMSVPDFAELLRDQNVTEFVRITPLTAH--IEYGHLVALGSEGFCLCKCLRLLLDGLCCRHGLKAMHSKEVSFNGACIAPRWRDGAAAWTMAALAAKPARLSATGTEGSGKLPPVDTDDASPVVFSHSEPTVRFHVFGNFCTLGKELASMAVYRITTIEGTQRLMDNIKKYAIQVIETEERSKKNAPLNRIFA---SRP--AADSPGGG 627 D T TR SV FAELL DQ + + VRIT + YGHLVALG +GF LC CLRL + GL CRHGL+A+ + FNG CIA RWRD WTM LAAK A + T G +PP D PV FS+S+PT R + + GKELAS+ + + QR+++N+ YA Q+IE E RS+ A NRIF +RP A D P GG Sbjct: 149 DGTWTTRTSVKFFAELLEDQVLDKLVRITRSFSDGGPNYGHLVALGPDGFVLCTCLRLRVYGLGCRHGLRAVRDTDFGFNGGCIASRWRDSTQPWTMEHLAAKRAAPANTAAGVPGGMPPAPVD---PVFFSNSKPTARVSNWASCVAFGKELASLMT-DVDAVAPCQRVLNNLTNYAKQLIEVEARSQHEATTNRIFTGVVARPVTATDPPEGG 359
BLAST of mRNA_H-elongata_contig103369.280.1 vs. uniprot
Match: D8LSE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE5_ECTSI) HSP 1 Score: 157 bits (396), Expect = 1.400e-41 Identity = 90/163 (55.21%), Postives = 107/163 (65.64%), Query Frame = 1 Query: 1 ADVTMATRMSVPDFAELLRDQNVTEFVRITPLTAHIEYGHLVALGSEGFCLCKCLRLLLDGLCCRHGLKAMHSKEVS-FNGACIAPRWRDGAAAWTMAALAAKPARLSATGTEG-------SGKLPPVDTDDASPVVFSHSEPTVRFHVFGNFCTLGKELASM 465 A V+M +R SVP FAELLRDQNV VRITP++ E GHLVALG +GF LC CLR L+ GL C H +KA+ + S FNGA I+PRWRD WTMAALAAKPA+LS TG G ++PPVDT SP+V SHS P + + + N LGKEL M Sbjct: 120 AGVSMVSRTSVPHFAELLRDQNVHTVVRITPMSTASECGHLVALGPDGFFLCTCLRQLVYGLLCPHAIKALWYQRASQFNGATISPRWRDSETPWTMAALAAKPAKLS-TGAAGLXXXXXXXXQMPPVDT---SPIVSSHSGPNLSAYAYANGVALGKELGGM 278
BLAST of mRNA_H-elongata_contig103369.280.1 vs. uniprot
Match: A0A6H5JYV9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV9_9PHAE) HSP 1 Score: 160 bits (406), Expect = 2.080e-41 Identity = 102/215 (47.44%), Postives = 124/215 (57.67%), Query Frame = 1 Query: 4 DVTMATRMSVPDFAELLRDQNVTEFVRITPLTAH--IEYGHLVALGSEGFCLCKCLRLLLDGLCCRHGLKAMHSKEVSFNGACIAPRWRDGAAAWTMAALAAKPARLSATGTEGSGKLPPVDTDDASPVVFSHSEPTVRFHVFGNFCTLGKELASMAVYRITTIEGTQRLMDNIKKYAIQVIETEERSKKNAPLNRIFA---SRP--AADSPGGG 627 D T TR SV FAELL DQ + + VRIT + YGHLVALG +GF LC CLRLL+ GL CRHGL+A+ + NG CIA RWRD WTM L AK A + T G +PP D P VFSHS+PT R + + GKELAS+ + I QR+++N+ YA Q+IE E RS+ A NRIF +RP A D P GG Sbjct: 406 DGTWTTRTSVKFFAELLEDQVLDKLVRITRSFSDGGPNYGHLVALGPDGFVLCTCLRLLVYGLGCRHGLRAVRDTDFGLNGGCIASRWRDSTQPWTMEHLTAKRAAPANTAAGVPGDMPPAPMD---PGVFSHSKPTARASNWASCVAFGKELASLMT-DVDAIAPCQRVLNNLTNYAKQLIEVEARSQHEATTNRIFTGVVARPVTATDPPEGG 616
BLAST of mRNA_H-elongata_contig103369.280.1 vs. uniprot
Match: A0A6H5JGY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY2_9PHAE) HSP 1 Score: 155 bits (392), Expect = 1.950e-39 Identity = 105/227 (46.26%), Postives = 134/227 (59.03%), Query Frame = 1 Query: 7 VTMATRMSVPDFAELLRDQNVTEFVRITPLTAHIEYGHLVALGSEGFCLCKCLRLLLDGLCCRHGLKAMHSKEV-SFNGACIAPRWRDGAAAWTMAALAAKPARLSATGTEGSGKLP-----PVDTDDASPVVFSHSEPTVRFHVFGNFCTLGKELASMAVYRITTIEGTQRLMDNIKKYAIQVIETEERSKKNAPLNRIFA---SRPAADSPGG---GAGRGEPGR 651 V+M +R SVP A+LLRDQNV VR++ +T EY HLVALG +GF LC CLR L+ GL C HGL+A+ ++ V SFNGA I+PRWR+ W MA LAAKPA LSA +G LP P D S V S S P V + + N LGK+L M I + G R M+ IK +A ++ ++RS++ NR+F S+PA D P G G GRG PGR Sbjct: 821 VSMVSRTSVPHVADLLRDQNVNAVVRVSMITPLSEYSHLVALGPDGFFLCTCLRQLVYGLLCPHGLEALWAEGVVSFNGAIISPRWRESETPWLMAELAAKPASLSARAATSAG-LPAGVGQPPRVDPNSTV--SRSGPNVPSYTYANGVALGKKLGGM-FKEINNLAGIHRAMETIKLFARGQVDLDKRSQEKHSTNRVFRGVFSQPAEDVPSGDAGGTGRG-PGR 1042
BLAST of mRNA_H-elongata_contig103369.280.1 vs. uniprot
Match: A0A6H5KQ14_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ14_9PHAE) HSP 1 Score: 151 bits (382), Expect = 5.680e-39 Identity = 93/196 (47.45%), Postives = 123/196 (62.76%), Query Frame = 1 Query: 1 ADVTMATRMSVPDFAELLRDQNVTEFVRITPLTAHIEYGHLVALGSEGFCLCKCLRLLLDGLCCRHGLKAM-----HSKEVSFNGACIAPRWRDGAAAWTMAALAAKPARLSATGTEGSGKLPPVDTDDASPVVFSHSEPTVRFHV----FGNFCTLGKELASMAVYRITTIEGTQRLMDNIKKYAIQVIETEERS 561 A VTMATR SV FA+LL DQNV E VRIT A E+GHLVALG +GF LC CLR+L+ GL C H +KA+ + K SFN ACI+PRWRD +WTMA LAAKPARL+ E +G LP +D + VV S+S TV V + + + GK++ + IT+ G QR++++ + +Q +E E+RS Sbjct: 354 AHVTMATRTSVAHFADLLHDQNVEELVRITIFNAQSEFGHLVALGPDGFFLCTCLRMLVYGLPCPHCIKALAHMRGNDKVFSFNAACISPRWRDSETSWTMAHLAAKPARLATADAELAG-LPVIDPNS---VVVSYSSATVAATVAAAGYADAVSYGKKMGGK-LRGITSSAGIQRVLESTYDFFLQQLEVEKRS 544
BLAST of mRNA_H-elongata_contig103369.280.1 vs. uniprot
Match: A0A6H5JXK5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK5_9PHAE) HSP 1 Score: 153 bits (386), Expect = 1.200e-38 Identity = 87/197 (44.16%), Postives = 123/197 (62.44%), Query Frame = 1 Query: 7 VTMATRMSVPDFAELLRDQNVTEFVRITPLTAHIEYGHLVALGSEGFCLCKCLRLLLDGLCCRHGLKAMHSKEVS-FNGACIAPRWRDGAAAWTMAALAAKPARLSATGTEGSGKLPP-VDTDDASPVVFSHSEPTVRFHVFGNFCTLGKELASMAVYRITTIEGTQRLMDNIKKYAIQVIETEERSKKNAPLNRIF 591 +TM +R SVP FA+LLR QNV VRI+ +T E+GHLVA+GS+GF LC CLR L+ GL C H +KA+ S+ ++ FNGA I P WRD + WTM ALAA+PARLS G++PP V DA + S P + + + N +LGKEL ++ + ++ G R++D + +A Q +E E+RS + R+F Sbjct: 670 ITMVSRTSVPHFADLLRGQNVDAVVRISKITPPSEFGHLVAVGSDGFFLCTCLRQLVYGLLCPHVIKALWSQRITRFNGASIGPWWRDSSTPWTMEALAARPARLSTGAAGAHGQVPPLVGNPDA--IGSLDSGPKLSAYGYANGLSLGKELGAL-FKEVGSVAGIHRVVDTVFNFARQQVEVEKRSLRQESRGRVF 863 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103369.280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103369.280.1 >prot_H-elongata_contig103369.280.1 ID=prot_H-elongata_contig103369.280.1|Name=mRNA_H-elongata_contig103369.280.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=248bp MATRMSVPDFAELLRDQNVTEFVRITPLTAHIEYGHLVALGSEGFCLCKCback to top mRNA from alignment at H-elongata_contig103369:1284..2071- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103369.280.1 ID=mRNA_H-elongata_contig103369.280.1|Name=mRNA_H-elongata_contig103369.280.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=788bp|location=Sequence derived from alignment at H-elongata_contig103369:1284..2071- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103369:1284..2071- >mRNA_H-elongata_contig103369.280.1 ID=mRNA_H-elongata_contig103369.280.1|Name=mRNA_H-elongata_contig103369.280.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1488bp|location=Sequence derived from alignment at H-elongata_contig103369:1284..2071- (Himanthalia elongata Himel1 dioecious)back to top |